Gcaud3181.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3181.t1
Unique NameGcaud3181.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1433_length_10733_cov_4.771659contigNODE_1433_length_10733_cov_4.771659:7009..8176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog903814.ELI_4585
Preferred namerpsR
PFAMsRibosomal_S18
Max annot lvl186801|Clostridia
KEGG koko:K02963
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue1.56e-08
EggNOG OGsCOG0238@1|root,COG0238@2|Bacteria,1V9XS@1239|Firmicutes,24MQV@186801|Clostridia,25WV7@186806|Eubacteriaceae
DescriptionBinds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3181Gcaud3181Gracilaria caudata M_176_S67 malegeneNODE_1433_length_10733_cov_4.771659 7009..8176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3181.t1Gcaud3181.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1433_length_10733_cov_4.771659 7009..8176 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3181.t1.stop1Gcaud3181.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1433_length_10733_cov_4.771659 7009..7011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3181.t1.CDS1Gcaud3181.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1433_length_10733_cov_4.771659 7009..7581 -
Gcaud3181.t1.CDS2Gcaud3181.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1433_length_10733_cov_4.771659 7709..7838 -
Gcaud3181.t1.CDS3Gcaud3181.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1433_length_10733_cov_4.771659 7998..8176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3181.t1.exon1Gcaud3181.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1433_length_10733_cov_4.771659 7009..7581 -
Gcaud3181.t1.exon2Gcaud3181.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1433_length_10733_cov_4.771659 7709..7838 -
Gcaud3181.t1.exon3Gcaud3181.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1433_length_10733_cov_4.771659 7998..8176 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3181.t1.intron1Gcaud3181.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1433_length_10733_cov_4.771659 7582..7708 -
Gcaud3181.t1.intron2Gcaud3181.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1433_length_10733_cov_4.771659 7839..7997 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3181.t1.start1Gcaud3181.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1433_length_10733_cov_4.771659 8174..8176 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3181.t1 ID=Gcaud3181.t1|Name=Gcaud3181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=294bp
MQRGVFQLTRELLRTKPVPNFCLSSRRALASSGDASGSNDSNLDAKKQSP
DGFFDEENIADLSPLEVARMRVTYGLVKEHIDAAEKGLPGLDPDSNPLID
PRSFDIRKLPELSPEVLKQFRKEVPSDAAAESRSVSTYNLWESIQSGETH
ELLEEHKETKDGEWTAVDERTMPRDQYARLQRQSVTSKASLSTQTSAVSQ
PTYFTPKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSG
LCAKSQRKLAKAVKTARTMALLNPEPIPRLTVEEMEEMERHLP*
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spliced messenger RNA

>Gcaud3181.t1 ID=Gcaud3181.t1|Name=Gcaud3181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=882bp|location=Sequence derived from alignment at NODE_1433_length_10733_cov_4.771659:7009..8176- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGAGGCGTATTCCAGCTGACACGTGAACTGCTCCGCACCAAGCC
TGTACCAAACTTTTGTTTGAGCTCAAGGAGAGCGCTAGCGAGCAGTGGCG
ATGCATCGGGATCCAATGATTCAAATTTGGATGCAAAGAAGCAGTCACCC
GATGGGTTCTTTGACGAAGAAAACATTGCAGATTTATCCCCTTTGGAAGT
GGCACGTATGCGCGTAACTTACGGTCTCGTCAAAGAACACATTGACGCGG
CTGAAAAAGGACTTCCAGGCTTGGATCCCGATTCGAACCCCCTCATTGAC
CCCAGATCTTTTGACATTCGCAAATTACCTGAACTCTCTCCAGAAGTTCT
GAAGCAGTTCCGGAAGGAGGTTCCGTCCGATGCGGCCGCGGAGAGTCGCT
CTGTTTCAACGTACAACCTATGGGAATCAATTCAAAGTGGAGAGACACAT
GAGTTATTGGAAGAACACAAGGAAACAAAAGACGGTGAATGGACAGCAGT
GGATGAGCGCACAATGCCTCGAGACCAATATGCACGGCTCCAAAGACAAT
CAGTAACGAGTAAGGCCAGCCTGTCCACGCAAACATCTGCCGTCTCTCAA
CCAACGTATTTTACTCCCAAGAAAATGAGGAAGGGAGATTGTCCTCTGAA
AGACGAACGTGGAAGATCGAACGTGGATTTCAGAGCAGTGGGAACATTAA
AAGCGTTTCTTTCGGACAATCTGAAGATTCTGCCGCGGAAGAAATCTGGA
TTGTGTGCAAAGTCGCAGAGAAAGCTGGCGAAAGCTGTGAAGACTGCGAG
AACAATGGCTTTGTTGAACCCGGAACCTATTCCAAGGCTAACGGTGGAGG
AGATGGAGGAGATGGAGAGACATCTCCCATGA
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protein sequence of Gcaud3181.t1

>Gcaud3181.t1 ID=Gcaud3181.t1|Name=Gcaud3181.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=294bp
MQRGVFQLTRELLRTKPVPNFCLSSRRALASSGDASGSNDSNLDAKKQSP
DGFFDEENIADLSPLEVARMRVTYGLVKEHIDAAEKGLPGLDPDSNPLID
PRSFDIRKLPELSPEVLKQFRKEVPSDAAAESRSVSTYNLWESIQSGETH
ELLEEHKETKDGEWTAVDERTMPRDQYARLQRQSVTSKASLSTQTSAVSQ
PTYFTPKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSG
LCAKSQRKLAKAVKTARTMALLNPEPIPRLTVEEMEEMERHLP*
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mRNA from alignment at NODE_1433_length_10733_cov_4.771659:7009..8176-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3181.t1 ID=Gcaud3181.t1|Name=Gcaud3181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1168bp|location=Sequence derived from alignment at NODE_1433_length_10733_cov_4.771659:7009..8176- (Gracilaria caudata M_176_S67 male)
ATGCAAAGAGGCGTATTCCAGCTGACACGTGAACTGCTCCGCACCAAGCC
TGTACCAAACTTTTGTTTGAGCTCAAGGAGAGCGCTAGCGAGCAGTGGCG
ATGCATCGGGATCCAATGATTCAAATTTGGATGCAAAGAAGCAGTCACCC
GATGGGTTCTTTGACGAAGAAAACATTGCGTAAGTTACTGCATCGGATCT
ATATCTAGCACCAAGTGCTTCATTTCAAATAGTGCTCGACATAGATAAGT
TTAACAAGTGAAACCATGTCGGAGGTGCGGGGGAGCGCGATATAACTTGC
TCTTTGCTAACTGGTAACTTTTGCTCTTATTATCATAGAGATTTATCCCC
TTTGGAAGTGGCACGTATGCGCGTAACTTACGGTCTCGTCAAAGAACACA
TTGACGCGGCTGAAAAAGGACTTCCAGGCTTGGATCCCGATTCGAACCCC
CTCATTGACCCCAGATCTGTACGTTCATTTATTCTTGTGCGAATGTTCCT
ACCGTTCCAGCTGGCTTCTATGTTCGTGCAGCAATTCTGACTTTTGATAT
GGATACATTGCCTCCTGCCTGGTATATAACGCTGGCTGTTCATAGTTTGA
CATTCGCAAATTACCTGAACTCTCTCCAGAAGTTCTGAAGCAGTTCCGGA
AGGAGGTTCCGTCCGATGCGGCCGCGGAGAGTCGCTCTGTTTCAACGTAC
AACCTATGGGAATCAATTCAAAGTGGAGAGACACATGAGTTATTGGAAGA
ACACAAGGAAACAAAAGACGGTGAATGGACAGCAGTGGATGAGCGCACAA
TGCCTCGAGACCAATATGCACGGCTCCAAAGACAATCAGTAACGAGTAAG
GCCAGCCTGTCCACGCAAACATCTGCCGTCTCTCAACCAACGTATTTTAC
TCCCAAGAAAATGAGGAAGGGAGATTGTCCTCTGAAAGACGAACGTGGAA
GATCGAACGTGGATTTCAGAGCAGTGGGAACATTAAAAGCGTTTCTTTCG
GACAATCTGAAGATTCTGCCGCGGAAGAAATCTGGATTGTGTGCAAAGTC
GCAGAGAAAGCTGGCGAAAGCTGTGAAGACTGCGAGAACAATGGCTTTGT
TGAACCCGGAACCTATTCCAAGGCTAACGGTGGAGGAGATGGAGGAGATG
GAGAGACATCTCCCATGA
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Coding sequence (CDS) from alignment at NODE_1433_length_10733_cov_4.771659:7009..8176-

>Gcaud3181.t1 ID=Gcaud3181.t1|Name=Gcaud3181.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=882bp|location=Sequence derived from alignment at NODE_1433_length_10733_cov_4.771659:7009..8176- (Gracilaria caudata M_176_S67 male)
ATGCAAAGAGGCGTATTCCAGCTGACACGTGAACTGCTCCGCACCAAGCC
TGTACCAAACTTTTGTTTGAGCTCAAGGAGAGCGCTAGCGAGCAGTGGCG
ATGCATCGGGATCCAATGATTCAAATTTGGATGCAAAGAAGCAGTCACCC
GATGGGTTCTTTGACGAAGAAAACATTGCAGATTTATCCCCTTTGGAAGT
GGCACGTATGCGCGTAACTTACGGTCTCGTCAAAGAACACATTGACGCGG
CTGAAAAAGGACTTCCAGGCTTGGATCCCGATTCGAACCCCCTCATTGAC
CCCAGATCTTTTGACATTCGCAAATTACCTGAACTCTCTCCAGAAGTTCT
GAAGCAGTTCCGGAAGGAGGTTCCGTCCGATGCGGCCGCGGAGAGTCGCT
CTGTTTCAACGTACAACCTATGGGAATCAATTCAAAGTGGAGAGACACAT
GAGTTATTGGAAGAACACAAGGAAACAAAAGACGGTGAATGGACAGCAGT
GGATGAGCGCACAATGCCTCGAGACCAATATGCACGGCTCCAAAGACAAT
CAGTAACGAGTAAGGCCAGCCTGTCCACGCAAACATCTGCCGTCTCTCAA
CCAACGTATTTTACTCCCAAGAAAATGAGGAAGGGAGATTGTCCTCTGAA
AGACGAACGTGGAAGATCGAACGTGGATTTCAGAGCAGTGGGAACATTAA
AAGCGTTTCTTTCGGACAATCTGAAGATTCTGCCGCGGAAGAAATCTGGA
TTGTGTGCAAAGTCGCAGAGAAAGCTGGCGAAAGCTGTGAAGACTGCGAG
AACAATGGCTTTGTTGAACCCGGAACCTATTCCAAGGCTAACGGTGGAGG
AGATGGAGGAGATGGAGAGACATCTCCCATGA
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