Gcaud3181.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3181.t1
Unique NameGcaud3181.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length294
Homology
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A2V3IEF9_9FLOR (30S ribosomal protein S18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEF9_9FLOR)

HSP 1 Score: 325 bits (834), Expect = 1.350e-108
Identity = 176/268 (65.67%), Postives = 208/268 (77.61%), Query Frame = 0
Query:   27 RALASSGDASGS--NDSNLDAKKQSPDGFFDEENIADLSPLEVARMRVTYGLVKEHIDAAEKGLPGLDPDSNPLIDPRSFDIRKLPELSPEVLKQFRKEVPSDAAAESRSVSTYNLWESIQSGETHELLEEHKETKDGEWTAVDERTMPRDQYARLQRQSVTSKASLSTQTSAVSQPTYFTPKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALLNPEPIPRLTVEEMEEMERHL 292
            RALA+  +  GS  N+    A     DGFF EENI+DLSPLEVARMRVTYGL+KEH++A EKGL  +DP+SNPLIDPRSF  RKLP++  EVL+QFRKEVP + AAESR VSTYNLWE++QSGETHELLEE    +D  W+AVDERTM    Y +LQRQ+V  +   S   SA     Y   +KM K +C LKD+RGRS VDFRAV ++KA+LSDNLKILPR+KSGLCAKSQRKLA+AVKTAR+MALLNPEPIP LTVEEM +ME++L
Sbjct:   28 RALATDNNEPGSELNERKERANADKSDGFFSEENISDLSPLEVARMRVTYGLLKEHVEAIEKGLEDVDPESNPLIDPRSFQTRKLPQIPKEVLEQFRKEVPPEVAAESRVVSTYNLWEALQSGETHELLEEQSTQED--WSAVDERTMDTRSYTKLQRQAVLGQKVPSHAPSAAMN--YMAKRKMNKSECALKDDRGRSVVDFRAVESMKAYLSDNLKILPRRKSGLCAKSQRKLARAVKTARSMALLNPEPIPELTVEEMRDMEKNL 291          
BLAST of Gcaud3181.t1 vs. uniprot
Match: R7QE34_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE34_CHOCR)

HSP 1 Score: 223 bits (569), Expect = 8.680e-68
Identity = 115/247 (46.56%), Postives = 168/247 (68.02%), Query Frame = 0
Query:   43 LDAKKQSPDGFFDEENIADLSPLEVARMRVTYGLVKEHIDAAEKGLPGLDPDSNPLIDPRSFDIRKLPELSPEVLKQFRKEVPSDAAAESRSVSTYNLWESIQS--GETHELLEEHKETKDGEWTAVDERTMPRDQYARLQRQSVTSKASLSTQTSAVSQPTYFTPKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALLNPEPIPRLTVEEMEE 287
            LD ++   +  F  EN   ++P E++RMRV YGL+KEH++A E+   G+DP +NPL+DPRSFD+RK+P+L  EVL+QFR+++P++ A+ SR VST  +W+++ S  G    +  E  +    EW  VDERTM   Q++R+QRQS  S   +  +    + P     +K +K  CPL+DERGR  VDFRA GTL+ +L++  KI+P++KSGL AK+QRKL+KA+KTARTMA++  EP   LT EE+ +
Sbjct:   86 LDRRENDRESLFSRENTEGIAPGELSRMRVAYGLLKEHVEALEQDFDGVDPHTNPLLDPRSFDVRKMPKLPKEVLEQFRRDLPAEVASSSRPVSTRGIWDALSSSSGAAGAMSPELHDENAAEWAVVDERTMDSQQFSRMQRQSFRSTVDVPFR----ADPLSAVRRKRKKKSCPLQDERGRVKVDFRAGGTLRPYLTEGGKIIPKRKSGLSAKAQRKLSKAIKTARTMAIIAREPRGTLTYEELTQ 328          
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A7V5UTM2_9BACT (30S ribosomal protein S18 n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5UTM2_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.070e-8
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0
Query:  225 VDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 272
            +D++ V TLK FL  + ++LPRKK+GLCA+ QRKL +A+K AR MALL
Sbjct:   14 IDYKEVETLKKFLDSHARVLPRKKTGLCARHQRKLTRAIKNARIMALL 61          
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A2M8FB80_9BACT (30S ribosomal protein S18 n=2 Tax=Candidatus Magasanikbacteria TaxID=1752731 RepID=A0A2M8FB80_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.190e-8
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 0
Query:  205 TPKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 272
            TPKK  K  C  K      +VD++ + TL+ FLS N+KI PR+K+GL AK QRK+AKA+K AR   LL
Sbjct:   12 TPKKQEKRYCFFK-AYDIEDVDYKDIETLRRFLSSNMKIKPRRKTGLSAKYQRKVAKAIKQARIAGLL 78          
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A1G1YGH5_9BACT (30S ribosomal protein S18 n=2 Tax=Candidatus Buchananbacteria TaxID=1817903 RepID=A0A1G1YGH5_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.850e-8
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0
Query:  225 VDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 272
            +D++   TL+ F+S   KI+PRK+SG+CAK QRKLA A+K ARTMALL
Sbjct:   24 IDYKDTQTLRRFISSYAKIVPRKRSGVCAKHQRKLANAIKRARTMALL 71          
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A2H5YDF0_9BACT (30S ribosomal protein S18 n=1 Tax=bacterium HR23 TaxID=2035418 RepID=A0A2H5YDF0_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.280e-8
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0
Query:  203 YFTPKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 272
            Y+ P   RK  CP   E+G + +D++ +  LK F+ + +KI PR+K+G+CAK QR+LA A+K AR +ALL
Sbjct:   29 YYPP---RKKACPFCVEKGLA-IDYKNIPLLKRFIGEQMKIEPRRKTGVCAKHQRRLATAIKRARHLALL 94          
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A7V5D214_9BACT (30S ribosomal protein S18 n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A7V5D214_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.810e-8
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0
Query:  219 ERGRSNVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 272
            +R    +DFR+   LK FLS + KI PRKK+G+CA  QRKLAKA+K AR M LL
Sbjct:    8 QRNIKEIDFRSAEVLKRFLSPSQKIKPRKKTGVCAFHQRKLAKAIKRARQMGLL 61          
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A7C4Y619_9BACT (30S ribosomal protein S18 n=1 Tax=Caldisericum exile TaxID=693075 RepID=A0A7C4Y619_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 4.200e-8
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query:  198 VSQPTYFTPKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 272
            V++  YF  +K +      K+E     +D++ V  L  F+S+  KILPR+ +GLCAK QR+LA+A+K ARTMALL
Sbjct:    7 VAKKRYFFRQKKKVCVFCAKNEE----IDYKDVSKLSRFISEKGKILPRRNTGLCAKHQRQLARAIKRARTMALL 77          
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A0U3G3L8_EUBLI (30S ribosomal protein S18 n=6 Tax=Eubacteriales TaxID=186802 RepID=A0A0U3G3L8_EUBLI)

HSP 1 Score: 59.3 bits (142), Expect = 4.860e-8
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0
Query:  206 PKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 272
            P K R+  C    ER  + VD++ V TLK ++S+  KILPR+ +G CAK QRK+ +AVK AR +ALL
Sbjct:    4 PFKRRRKVCEFC-ERHETEVDYKDVATLKKYISERGKILPRRATGTCAKHQRKVTEAVKRARNIALL 69          
BLAST of Gcaud3181.t1 vs. uniprot
Match: A0A660SDM5_9BACT (30S ribosomal protein S18 n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A660SDM5_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 6.210e-8
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0
Query:  210 RKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 272
            RKG    KD  G   +D++ V  LKAF+++  KILP + +GLCAK QRKL +A+K AR MALL
Sbjct:    7 RKGCRFCKD--GAPEIDYKDVNLLKAFMTERGKILPARVTGLCAKHQRKLTRAIKRARQMALL 67          
The following BLAST results are available for this feature:
BLAST of Gcaud3181.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEF9_9FLOR1.350e-10865.6730S ribosomal protein S18 n=1 Tax=Gracilariopsis c... [more]
R7QE34_CHOCR8.680e-6846.56Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7V5UTM2_9BACT1.070e-858.3330S ribosomal protein S18 n=1 Tax=bacterium TaxID=... [more]
A0A2M8FB80_9BACT1.190e-851.4730S ribosomal protein S18 n=2 Tax=Candidatus Magas... [more]
A0A1G1YGH5_9BACT1.850e-860.4230S ribosomal protein S18 n=2 Tax=Candidatus Bucha... [more]
A0A2H5YDF0_9BACT2.280e-845.7130S ribosomal protein S18 n=1 Tax=bacterium HR23 T... [more]
A0A7V5D214_9BACT2.810e-857.4130S ribosomal protein S18 n=1 Tax=Candidatus Parcu... [more]
A0A7C4Y619_9BACT4.200e-845.3330S ribosomal protein S18 n=1 Tax=Caldisericum exi... [more]
A0A0U3G3L8_EUBLI4.860e-849.2530S ribosomal protein S18 n=6 Tax=Eubacteriales Ta... [more]
A0A660SDM5_9BACT6.210e-852.3830S ribosomal protein S18 n=1 Tax=candidate divisi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001648Ribosomal protein S18PRINTSPR00974RIBOSOMALS18coord: 242..249
score: 50.38
coord: 232..242
score: 36.36
coord: 250..264
score: 50.3
coord: 264..274
score: 49.31
IPR001648Ribosomal protein S18TIGRFAMTIGR00165TIGR00165coord: 209..272
e-value: 5.2E-15
score: 53.4
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 223..272
e-value: 5.3E-18
score: 64.9
IPR001648Ribosomal protein S18PANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 144..273
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10Ribosomal protein S18coord: 195..275
e-value: 9.8E-19
score: 69.1
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 211..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..46
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 144..273

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1433_length_10733_cov_4.771659contigNODE_1433_length_10733_cov_4.771659:7009..8176 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3181.t1Gcaud3181.t1Gracilaria caudata M_176_S67 malemRNANODE_1433_length_10733_cov_4.771659 7009..8176 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3181.t1 ID=Gcaud3181.t1|Name=Gcaud3181.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=294bp
MQRGVFQLTRELLRTKPVPNFCLSSRRALASSGDASGSNDSNLDAKKQSP
DGFFDEENIADLSPLEVARMRVTYGLVKEHIDAAEKGLPGLDPDSNPLID
PRSFDIRKLPELSPEVLKQFRKEVPSDAAAESRSVSTYNLWESIQSGETH
ELLEEHKETKDGEWTAVDERTMPRDQYARLQRQSVTSKASLSTQTSAVSQ
PTYFTPKKMRKGDCPLKDERGRSNVDFRAVGTLKAFLSDNLKILPRKKSG
LCAKSQRKLAKAVKTARTMALLNPEPIPRLTVEEMEEMERHLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
IPR036870Ribosomal_S18_sf