Gcaud2243.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2243.t1
Unique NameGcaud2243.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length1706
Homology
BLAST of Gcaud2243.t1 vs. uniprot
Match: R7QGB5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGB5_CHOCR)

HSP 1 Score: 573 bits (1477), Expect = 3.620e-177
Identity = 475/1170 (40.60%), Postives = 622/1170 (53.16%), Query Frame = 0
Query:  598 LSPSFSDAPSPSNQWQVPRSKVMGQDILSPQTLFSPPQMPKRLVRGTTGGHVAP-RPAPKLFRSGTSSPQLSISSAGTRSNGDHERGSSNFSQRVAVESSKNEARPSRRSDNSSISQPFAAVEGHPRAGAGVRISSGKSSSSFSLPPSASESSDRRPQGSVGSSPV---------------------PALVEDSQPLEPVGVDDSFLGRDPMATPQSVLLEPLGEDDDISAIEEALSDRAIFQRVEEVLVKTSDYRASQ-DPLSTNSVSNAADAFSGIESPGKRAGSAGLTEPTERTNDMREIRQGSRASSAKQSPVPSPKTRSEMAGPSASRPPAGQTKAAKVRPSTGGSVASSTLATPEIKPSAALPPLGPDAXXXXXXXXXXXXPMYSTPIMSTERRRAVPPTXXXXXXIETLIKKFSDQTPPPEPVDYGHRPISTMEPSAGLFQKLISVWQSSDEESRDQGSVRSNILDGGLTPRSAVLQP-SGSGSHESTLPSGDTELALGRGSASIDSSRSRRPRAVRLPDKSLQVASESMLSPDEEIHSKLQELHEGA------------SMSSYGDMFPEEKDRDLM-AGTRVGEQRDEQV----------GTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMATNQNSSAQSSQLQSGKTAIDTDGHHVRVDKRRLDWLTRELLAARDAISRKELQMTFAETQRLEQQEILLLEKQDAESVVEAMKRILAEREQELKDARNRLSTTIQNV--STQDRSSLAS-KTSMGGADESLGQLIREGHAKLHTRIEEAESKQLQTTNLFSNEMQNLWSEVQKAMLEKMVEMTEKRDMELELLRXXXXXXXXXXXXLQTTSSQLVQRNRECEAEASEMRLETLKATHRYELEMSHVTAQVELVNEFSKKLHDNFRETENLRQQVLHYQEKLSHITNTTGVSQRQIKELREAVTRANDECARLRREADLAKKKGWEAIRRAEELEDLRIKDEAAQVAGRYPERRDGSESGSYRSHEPAR-SPRNRAGGVGG--RYHGMTRTRGVAGSPTPAQKAWLVIKDKIGGIVANKDMGASRRRGHPYPPRRDPSRTGTVSQTS--QTRSRNSNRDDDIISRS----TRSRSSNGSGGTPRSNIRRMSPS---PSAGSNPYMHSSPHSRGEGQSVRAAGF 1705
            +SPS SDAP PS+QWQ+ R K    D++SPQ LFSPP MP+RL R T    + P + AP LFR+G  SPQLS  S       D +  S N     A       A  S       + QP    +   +A A   +   + + SF+LPP+AS  S    Q   G SP                      P+  +D +     G D+    ++    P     +P  +D              +F++VEE  V T ++     D    +S  N   + S   S     G A +   TE ++    IR+  R+S       PS   RS  +G  +      +   A V         S +  +P   P  A+ P G                 Y T +    + R VPPT      +  L++ F+ +    E VD    P+STM PSAGLFQKLISVW+SS+    D     +N LD  L       Q  S + + +STLPSGDT+L   + +   +S RSRR RA+R+              P   +H  LQ  HE +            S++S+ D F  EK+R  +  G   G   DE +           +S                            XXXXX                 G+T + TDG+ +R+D+R LDWLT+ELL ARD +SR+ELQMTF ETQR+EQ+E LLL+KQ+AESVV AM +ILA+RE ELKDAR+RLS  I +V  +TQ RSSLAS + SM    ++L +LI EGHA LH+R +E++ K  Q  +  + E + LW+EVQ+AM+++M EMTEKRD ELELLR            LQ +S  L+ +N   +++ + MR E  +A  RY+LEM+HV AQVELVNEFSKKLHDNFRETENLRQQVL YQ+KLSHIT+T+GVSQRQIKELREAVTRAND+CARLRREADLAK+KG EA+RRAEELE+LR KD AA  A R+P+R+  ++S SYRSHEP R + +NR GG G   RYH  TR+RG+A SPTPA+ AWL+IKD+IGGIV  K+  + RRR      RRDP R G  SQ+S   +RSR S   +D + RS      SRSS GSG + RS     S S   P A +  YM +SP +R E + VRAA F
Sbjct:    1 MSPSGSDAPEPSSQWQIYRQKTHAADVMSPQQLFSPPPMPRRLSRTTAATQMTPPQVAPILFRNG--SPQLSAHSGEGNMFEDPQLLSKNSRVPFAT------AYQSPGGGEHPLGQPLQNPQDGSQAHAQSSVQ--QRTGSFALPPTASHGSRASQQD--GDSPFDETVGPTDDGDNYANQADATDPSFEKDGEESAQGGADEYEYDQEEEGAPYDDGFDPDKDD--------------VFEKVEEYDVTTPEHEGDNPDEEEAHSSGNMQQSVSASGSDRADNGPA-MAMWTEGSDSNERIRRTPRSS-------PSASERSTGSGRGSRHSDVFREAEAMVAADAEYLAPSESAKSPA--PRRAVHPSG-----------------YPTAL----QYREVPPTPPSPPTVAALVESFTARRHAAESVDAN--PVSTMAPSAGLFQKLISVWRSSELAGIDNADRGTNRLDSSLAAIYRGDQNVSQATTQDSTLPSGDTDLIPSK-TVHAESPRSRRRRAIRM-------------EPGSPVHQDLQRAHEASTESGRYSADERGSIASFSDAFSSEKERSFLHTGQGEGYNWDEAIQGDQSAGIPLSSSASQDQRNSEMRTDTSREATPGRSRPPLPXXXXXXXXXXXXXXXXXXHGTQGRT-VATDGNVIRIDRRHLDWLTKELLNARDMLSRQELQMTFHETQRVEQEEELLLDKQNAESVVGAMTQILADREGELKDARSRLSVAIDSVGTTTQARSSLASSRNSMSAESQNLNKLITEGHANLHSRFDESDKKGEQIADQMTKETRGLWAEVQRAMVQQMTEMTEKRDEELELLRQELEHRQSLIANLQKSSEDLLSKNTGFQSDITTMRAERQRADQRYQLEMAHVGAQVELVNEFSKKLHDNFRETENLRQQVLQYQDKLSHITSTSGVSQRQIKELREAVTRANDDCARLRREADLAKRKGMEAVRRAEELEELRHKDAAAHSASRFPDRQARTDSSSYRSHEPIRPAGQNRPGGSGSGARYHTATRSRGIAASPTPAKNAWLMIKDRIGGIVTGKESSSLRRRPTGTHVRRDPMRNGPPSQSSGSHSRSRASPGGEDGLPRSRSASVNSRSSRGSGSSLRSGGGSKSGSQVSPIADTRQYMRTSPRTR-EYEPVRAANF 1095          
BLAST of Gcaud2243.t1 vs. uniprot
Match: R7QIJ7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIJ7_CHOCR)

HSP 1 Score: 94.4 bits (233), Expect = 8.860e-16
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 0
Query:  120 KKLLPDVRRHALVQQHPPAGAVDTYVGNVAEIPPSKDVWPAVHLAELVIACAVYGPRHNEFRHSLWRFPTEIVRTTFHASMASVARAVCLPPPEVLYKAGPPPSPAVMSPHALPPPMSHYS 240
            +KLL  VR  A +   P  G VD +VGN   +PP +D+ PA+ LA+LV+A AVYGP H  +R   W+ PT+ +R + H  + SVA+AV LPPP++LY  GP  S + +     PP  S YS
Sbjct:  305 RKLLDVVRADANIHSVP--GIVDHFVGNAPAVPPVRDIRPALRLAQLVLAAAVYGPDHT-YRDVFWQLPTDSLRNSLHKCLTSVAQAVELPPPDLLYADGPA-SASALPDDQQPPSASTYS 421          
The following BLAST results are available for this feature:
BLAST of Gcaud2243.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QGB5_CHOCR3.620e-17740.60Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QIJ7_CHOCR8.860e-1644.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1490..1517
NoneNo IPR availableCOILSCoilCoilcoord: 1270..1304
NoneNo IPR availableCOILSCoilCoilcoord: 1375..1419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 405..428
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1608..1705
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1164..1216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 487..516
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 831..848
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 550..796
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 585..633
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1299..1322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 918..935
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 878..895
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1540..1588
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1656..1696
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 730..756
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 830..1221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 550..568
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1055..1071
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1136..1162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 458..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 412..428
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 659..696
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 335..349
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 458..531
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1540..1564

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1427_length_10755_cov_3.958177contigNODE_1427_length_10755_cov_3.958177:104..5221 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2243.t1Gcaud2243.t1Gracilaria caudata M_176_S67 malemRNANODE_1427_length_10755_cov_3.958177 104..5221 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2243.t1 ID=Gcaud2243.t1|Name=Gcaud2243.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=1706bp
MATPATQPRLTETASMILSWLRTAVPRILQNAGHPVARRKKEQPVHALVT
VLQDAVVLADIVSYLDPMRIPPAAVMRSTGRGVMSSPLPVSSTEPISNID
ARQLHVQYKNNTRRVVDAVKKLLPDVRRHALVQQHPPAGAVDTYVGNVAE
IPPSKDVWPAVHLAELVIACAVYGPRHNEFRHSLWRFPTEIVRTTFHASM
ASVARAVCLPPPEVLYKAGPPPSPAVMSPHALPPPMSHYSPQLSPLMRNP
VSPGLSASPSHMHSPVYIGTPQPINTAHAPHASTTPHSMSPAPYHGYSPR
TPVHGPPFSPQQYATPQYAPAPMTIPPTSHGAAPVPKTEKKKSSKKSAEK
QKSGSSSASRARSPAKTSEGLVGIAERSVPDAPTSALDATALQISTEEGI
GGRKFSLVTEDSGSRSREISPLPDFTGTFQKVQSRTDTSELDDFRNMSAV
TEQGVLIGVTDSSKSASRGNQPGAVDDTRDSEMQSGKSSDDFFTPNESMS
ESESHKQSTASHEFFVTSVASGGPPEPSAFFSESKVDEVVRKSVSTSFAE
QISRPDVYAQNTSSGSMERDGVSEDDARLNREAAQGSSLDFTNPAFSLSP
SFSDAPSPSNQWQVPRSKVMGQDILSPQTLFSPPQMPKRLVRGTTGGHVA
PRPAPKLFRSGTSSPQLSISSAGTRSNGDHERGSSNFSQRVAVESSKNEA
RPSRRSDNSSISQPFAAVEGHPRAGAGVRISSGKSSSSFSLPPSASESSD
RRPQGSVGSSPVPALVEDSQPLEPVGVDDSFLGRDPMATPQSVLLEPLGE
DDDISAIEEALSDRAIFQRVEEVLVKTSDYRASQDPLSTNSVSNAADAFS
GIESPGKRAGSAGLTEPTERTNDMREIRQGSRASSAKQSPVPSPKTRSEM
AGPSASRPPAGQTKAAKVRPSTGGSVASSTLATPEIKPSAALPPLGPDAS
SPAIRPSSRKPPMYSTPIMSTERRRAVPPTPPSPPSIETLIKKFSDQTPP
PEPVDYGHRPISTMEPSAGLFQKLISVWQSSDEESRDQGSVRSNILDGGL
TPRSAVLQPSGSGSHESTLPSGDTELALGRGSASIDSSRSRRPRAVRLPD
KSLQVASESMLSPDEEIHSKLQELHEGASMSSYGDMFPEEKDRDLMAGTR
VGEQRDEQVGTSRGDISGRPSSDDAARMNTISTTRDDSESATQDMRMATN
QNSSAQSSQLQSGKTAIDTDGHHVRVDKRRLDWLTRELLAARDAISRKEL
QMTFAETQRLEQQEILLLEKQDAESVVEAMKRILAEREQELKDARNRLST
TIQNVSTQDRSSLASKTSMGGADESLGQLIREGHAKLHTRIEEAESKQLQ
TTNLFSNEMQNLWSEVQKAMLEKMVEMTEKRDMELELLRKELESREKQVQ
DLQTTSSQLVQRNRECEAEASEMRLETLKATHRYELEMSHVTAQVELVNE
FSKKLHDNFRETENLRQQVLHYQEKLSHITNTTGVSQRQIKELREAVTRA
NDECARLRREADLAKKKGWEAIRRAEELEDLRIKDEAAQVAGRYPERRDG
SESGSYRSHEPARSPRNRAGGVGGRYHGMTRTRGVAGSPTPAQKAWLVIK
DKIGGIVANKDMGASRRRGHPYPPRRDPSRTGTVSQTSQTRSRNSNRDDD
IISRSTRSRSSNGSGGTPRSNIRRMSPSPSAGSNPYMHSSPHSRGEGQSV
RAAGF*
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