Gcaud2245.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2245.t1
Unique NameGcaud2245.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1427_length_10755_cov_3.958177contigNODE_1427_length_10755_cov_3.958177:8536..8919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog37682.EMT33367
PFAMsFolB
Max annot lvl35493|Streptophyta
KEGG rclassRC00721,RC00943,RC01479,RC03333,RC03334
KEGG koko:K01633
KEGG ReactionR03504,R11037,R11073
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00840
GOsGO:0003674,GO:0003824,GO:0004150,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016829,GO:0016830,GO:0016832,GO:0044424,GO:0044444,GO:0044464
Evalue4.96e-33
EggNOG OGsCOG1539@1|root,2RZV8@2759|Eukaryota,37UEQ@33090|Viridiplantae,3GIVM@35493|Streptophyta,3M68Y@4447|Liliopsida,3IHRQ@38820|Poales
EC1.13.11.81,4.1.2.25,5.1.99.8
DescriptionCatalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2245Gcaud2245Gracilaria caudata M_176_S67 malegeneNODE_1427_length_10755_cov_3.958177 8536..8919 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2245.t1.stop1Gcaud2245.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1427_length_10755_cov_3.958177 8536..8538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2245.t1.CDS1Gcaud2245.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1427_length_10755_cov_3.958177 8536..8919 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2245.t1.exon1Gcaud2245.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1427_length_10755_cov_3.958177 8536..8919 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2245.t1.start1Gcaud2245.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1427_length_10755_cov_3.958177 8917..8919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2245.t1Gcaud2245.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1427_length_10755_cov_3.958177 8536..8919 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2245.t1 ID=Gcaud2245.t1|Name=Gcaud2245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=128bp
MRDRLFVHGLKLFGRHGVLQAEKSLGQQFVVDVDVFADVRRACKSDDFTH
TLNYVKVFDVAKSVVEGRSCDLVEHVAQRIADDLFVELPAAKSVRVCVRK
PHVALPAVLDAVGVEIWRHKAGETPEE*
back to top

spliced messenger RNA

>Gcaud2245.t1 ID=Gcaud2245.t1|Name=Gcaud2245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:8536..8919- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGACAGATTGTTCGTGCACGGGCTCAAACTGTTCGGGCGGCACGG
AGTGCTGCAGGCTGAGAAGTCGCTCGGTCAGCAGTTCGTCGTCGACGTCG
ACGTGTTCGCGGACGTGAGGAGGGCGTGCAAGTCTGATGATTTCACGCAT
ACCTTGAATTATGTGAAGGTTTTTGACGTAGCCAAGAGCGTTGTGGAGGG
CCGGTCTTGTGATCTTGTGGAGCACGTTGCGCAGCGCATTGCGGACGATC
TGTTCGTTGAACTGCCAGCGGCCAAATCTGTGCGCGTGTGTGTGCGGAAG
CCGCATGTGGCGTTGCCCGCTGTTCTGGACGCTGTGGGCGTGGAGATCTG
GCGGCATAAAGCGGGCGAGACTCCGGAGGAATGA
back to top

protein sequence of Gcaud2245.t1

>Gcaud2245.t1 ID=Gcaud2245.t1|Name=Gcaud2245.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=128bp
MRDRLFVHGLKLFGRHGVLQAEKSLGQQFVVDVDVFADVRRACKSDDFTH
TLNYVKVFDVAKSVVEGRSCDLVEHVAQRIADDLFVELPAAKSVRVCVRK
PHVALPAVLDAVGVEIWRHKAGETPEE*
back to top

mRNA from alignment at NODE_1427_length_10755_cov_3.958177:8536..8919-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2245.t1 ID=Gcaud2245.t1|Name=Gcaud2245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:8536..8919- (Gracilaria caudata M_176_S67 male)
ATGCGCGACAGATTGTTCGTGCACGGGCTCAAACTGTTCGGGCGGCACGG
AGTGCTGCAGGCTGAGAAGTCGCTCGGTCAGCAGTTCGTCGTCGACGTCG
ACGTGTTCGCGGACGTGAGGAGGGCGTGCAAGTCTGATGATTTCACGCAT
ACCTTGAATTATGTGAAGGTTTTTGACGTAGCCAAGAGCGTTGTGGAGGG
CCGGTCTTGTGATCTTGTGGAGCACGTTGCGCAGCGCATTGCGGACGATC
TGTTCGTTGAACTGCCAGCGGCCAAATCTGTGCGCGTGTGTGTGCGGAAG
CCGCATGTGGCGTTGCCCGCTGTTCTGGACGCTGTGGGCGTGGAGATCTG
GCGGCATAAAGCGGGCGAGACTCCGGAGGAATGA
back to top

Coding sequence (CDS) from alignment at NODE_1427_length_10755_cov_3.958177:8536..8919-

>Gcaud2245.t1 ID=Gcaud2245.t1|Name=Gcaud2245.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=384bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:8536..8919- (Gracilaria caudata M_176_S67 male)
ATGCGCGACAGATTGTTCGTGCACGGGCTCAAACTGTTCGGGCGGCACGG
AGTGCTGCAGGCTGAGAAGTCGCTCGGTCAGCAGTTCGTCGTCGACGTCG
ACGTGTTCGCGGACGTGAGGAGGGCGTGCAAGTCTGATGATTTCACGCAT
ACCTTGAATTATGTGAAGGTTTTTGACGTAGCCAAGAGCGTTGTGGAGGG
CCGGTCTTGTGATCTTGTGGAGCACGTTGCGCAGCGCATTGCGGACGATC
TGTTCGTTGAACTGCCAGCGGCCAAATCTGTGCGCGTGTGTGTGCGGAAG
CCGCATGTGGCGTTGCCCGCTGTTCTGGACGCTGTGGGCGTGGAGATCTG
GCGGCATAAAGCGGGCGAGACTCCGGAGGAATGA
back to top