Gcaud2172.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2172.t1
Unique Name	Gcaud2172.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	664

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1423_length_10774_cov_3.823739	contig	NODE_1423_length_10774_cov_3.823739:2613..4604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003289394.1
PFAMs	Pkinase_Tyr
Max annot lvl	554915\|Amoebozoa
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue	3.85e-24
EggNOG OGs	COG0515@1\|root,KOG0192@2759\|Eukaryota,3XF79@554915\|Amoebozoa
Description	Kelch motif
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2172	Gcaud2172	Gracilaria caudata M_176_S67 male	gene	NODE_1423_length_10774_cov_3.823739 2613..4604 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2172.t1.start1	Gcaud2172.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1423_length_10774_cov_3.823739 2613..2615 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2172.t1.CDS1	Gcaud2172.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1423_length_10774_cov_3.823739 2613..4604 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2172.t1.exon1	Gcaud2172.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1423_length_10774_cov_3.823739 2613..4604 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2172.t1.stop1	Gcaud2172.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1423_length_10774_cov_3.823739 4602..4604 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2172.t1	Gcaud2172.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1423_length_10774_cov_3.823739 2613..4604 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1423_length_10774_cov_3.823739:2613..4604+
coding sequence from alignment at NODE_1423_length_10774_cov_3.823739:2613..4604+

mRNA sequence

>Gcaud2172.t1 ID=Gcaud2172.t1|Name=Gcaud2172.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=664bp
MDTEERTAIQNEQNYFGGLLSDKKPPSNCITNVRLRFDSDGDLFFAFTTA
GNDIYTVCVVLKDKKNLGWKECRSLFSAMQMAQRGTEMSPIVFGNRLKAI
AESLGRVDGPTTFLSFSIATIIPGTSSMRVTDPDTITSTGLDFNSDGDIV
VTSQTKCGSTYTIIIQLHLQNIELTVLEGQAFALALQILETGDVLPPDGF
LTFAVGLKRMFNRVNVAKNEQKYVIAVRPTPVENNVPLPDIVHEAAQRFL
PSSQSSRSSIAPSASPRANGSYQYKNITIVRPLKESGQAQVFEARKGSQK
VALKVYNDTGRQHDESYKTEVKMLLKMSYHPNVVTVLDFFGEPKPAIAME
FVEGEDLFDYLHNNRRPSEAEGLKLVIGIAEGLYHLHKNNIIHLDMKTPN
ILRRSDGSPVIIDLGLSAILERDNARSGRRQGARIGKNTSLRDPGHTVLE
TYIMQKTEGGKGSLLWMAPEMLTQSEWSDRTDVYAFGIIMWEVFSGKQPF
IPDLSQTITADGLKILIATGHRPSMAHVSHINEKLKRIITMCWDNDPKRR
PTMMRVLEMLRRTDPKALFESFDQDKNGELEFSEFTSFLQKYASQIQDPF
KISALFKAIDTDGSGSIGFDEFEKFWSSVETHGLDAFISNRGAKKVKAAQ
AAKPKRFDDCVIQ*

spliced messenger RNA

>Gcaud2172.t1 ID=Gcaud2172.t1|Name=Gcaud2172.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1992bp|location=Sequence derived from alignment at NODE_1423_length_10774_cov_3.823739:2613..4604+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACGGAAGAAAGGACCGCCATTCAAAACGAGCAAAATTACTTTGG
GGGGCTACTAAGTGATAAGAAACCTCCATCAAACTGCATTACAAATGTCC
GTTTACGATTTGATTCCGATGGTGATCTTTTCTTCGCATTCACCACAGCT
GGCAATGACATATACACAGTTTGTGTAGTTCTCAAGGATAAAAAGAACTT
GGGTTGGAAAGAATGTCGGTCTTTGTTTTCAGCAATGCAAATGGCGCAAC
GGGGTACGGAAATGAGCCCCATAGTATTTGGCAATCGTCTGAAAGCAATT
GCCGAGAGCCTCGGTCGGGTTGATGGTCCAACTACATTCTTAAGCTTCTC
CATCGCCACCATAATTCCAGGGACTTCTTCCATGCGAGTAACAGATCCCG
ATACCATTACATCCACGGGCCTGGACTTTAACAGTGACGGCGATATAGTT
GTAACGTCGCAGACAAAGTGTGGATCGACGTATACCATCATCATTCAACT
ACACCTTCAGAATATTGAACTTACGGTTCTAGAAGGGCAAGCATTTGCGC
TCGCCCTGCAGATATTGGAAACTGGAGATGTGCTGCCCCCCGATGGCTTT
CTCACCTTTGCTGTTGGGCTGAAGAGAATGTTCAATCGCGTCAATGTCGC
TAAGAACGAGCAGAAATATGTCATTGCAGTGCGCCCGACTCCTGTCGAAA
ACAACGTTCCGCTTCCAGATATTGTTCATGAGGCCGCCCAAAGATTTTTG
CCATCGTCGCAAAGCTCACGAAGTTCAATTGCTCCGTCGGCATCTCCGCG
CGCAAATGGATCTTATCAATATAAGAATATCACTATAGTAAGACCTCTGA
AAGAAAGTGGCCAAGCTCAAGTATTTGAGGCGAGAAAAGGTTCTCAAAAG
GTTGCCCTCAAAGTCTACAACGATACTGGGCGCCAGCACGATGAATCGTA
CAAAACTGAAGTCAAGATGCTCCTCAAGATGTCTTATCACCCAAATGTGG
TAACGGTTCTAGACTTCTTCGGAGAGCCGAAACCAGCTATAGCTATGGAG
TTTGTCGAGGGTGAAGACCTCTTTGATTACCTACACAACAACCGTCGCCC
CAGTGAAGCGGAAGGATTGAAACTTGTTATTGGTATTGCCGAAGGTCTGT
ATCATCTGCACAAGAATAATATTATTCATCTTGATATGAAAACTCCCAAC
ATTCTGAGACGCAGCGATGGTAGCCCCGTCATTATAGATCTTGGTCTAAG
TGCAATTCTCGAGAGAGATAACGCTCGCTCGGGGAGGAGACAAGGAGCAC
GAATAGGTAAAAACACATCTCTCAGAGATCCAGGTCATACCGTTCTGGAG
ACATATATTATGCAGAAAACTGAGGGAGGAAAGGGAAGCCTGTTGTGGAT
GGCGCCGGAAATGCTGACGCAAAGTGAGTGGAGTGATCGCACTGATGTGT
ATGCGTTTGGAATTATCATGTGGGAAGTTTTCTCCGGGAAACAGCCTTTC
ATCCCGGACTTGTCGCAAACTATCACCGCTGACGGGCTAAAAATCTTGAT
TGCAACCGGTCATCGTCCGTCTATGGCTCATGTTTCGCACATAAACGAAA
AACTGAAGAGGATTATCACGATGTGCTGGGACAACGACCCTAAGCGCCGT
CCCACAATGATGCGTGTGCTGGAGATGCTTCGTAGGACAGACCCGAAGGC
TCTGTTTGAAAGTTTCGATCAAGATAAGAATGGTGAACTTGAATTCTCGG
AGTTCACGAGCTTCCTGCAGAAGTATGCCTCTCAAATTCAGGACCCATTC
AAAATATCGGCTCTGTTCAAAGCAATCGACACAGATGGTTCAGGATCTAT
AGGATTCGACGAATTCGAAAAGTTTTGGTCGTCAGTTGAGACGCACGGAC
TCGATGCGTTCATTTCGAATCGAGGGGCGAAGAAGGTGAAGGCTGCACAA
GCGGCAAAACCAAAACGTTTCGATGATTGTGTGATTCAGTAA

protein sequence of Gcaud2172.t1

>Gcaud2172.t1 ID=Gcaud2172.t1|Name=Gcaud2172.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=664bp
MDTEERTAIQNEQNYFGGLLSDKKPPSNCITNVRLRFDSDGDLFFAFTTA
GNDIYTVCVVLKDKKNLGWKECRSLFSAMQMAQRGTEMSPIVFGNRLKAI
AESLGRVDGPTTFLSFSIATIIPGTSSMRVTDPDTITSTGLDFNSDGDIV
VTSQTKCGSTYTIIIQLHLQNIELTVLEGQAFALALQILETGDVLPPDGF
LTFAVGLKRMFNRVNVAKNEQKYVIAVRPTPVENNVPLPDIVHEAAQRFL
PSSQSSRSSIAPSASPRANGSYQYKNITIVRPLKESGQAQVFEARKGSQK
VALKVYNDTGRQHDESYKTEVKMLLKMSYHPNVVTVLDFFGEPKPAIAME
FVEGEDLFDYLHNNRRPSEAEGLKLVIGIAEGLYHLHKNNIIHLDMKTPN
ILRRSDGSPVIIDLGLSAILERDNARSGRRQGARIGKNTSLRDPGHTVLE
TYIMQKTEGGKGSLLWMAPEMLTQSEWSDRTDVYAFGIIMWEVFSGKQPF
IPDLSQTITADGLKILIATGHRPSMAHVSHINEKLKRIITMCWDNDPKRR
PTMMRVLEMLRRTDPKALFESFDQDKNGELEFSEFTSFLQKYASQIQDPF
KISALFKAIDTDGSGSIGFDEFEKFWSSVETHGLDAFISNRGAKKVKAAQ
AAKPKRFDDCVIQ*

mRNA from alignment at NODE_1423_length_10774_cov_3.823739:2613..4604+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2172.t1 ID=Gcaud2172.t1|Name=Gcaud2172.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1992bp|location=Sequence derived from alignment at NODE_1423_length_10774_cov_3.823739:2613..4604+ (Gracilaria caudata M_176_S67 male)
ATGGATACGGAAGAAAGGACCGCCATTCAAAACGAGCAAAATTACTTTGG
GGGGCTACTAAGTGATAAGAAACCTCCATCAAACTGCATTACAAATGTCC
GTTTACGATTTGATTCCGATGGTGATCTTTTCTTCGCATTCACCACAGCT
GGCAATGACATATACACAGTTTGTGTAGTTCTCAAGGATAAAAAGAACTT
GGGTTGGAAAGAATGTCGGTCTTTGTTTTCAGCAATGCAAATGGCGCAAC
GGGGTACGGAAATGAGCCCCATAGTATTTGGCAATCGTCTGAAAGCAATT
GCCGAGAGCCTCGGTCGGGTTGATGGTCCAACTACATTCTTAAGCTTCTC
CATCGCCACCATAATTCCAGGGACTTCTTCCATGCGAGTAACAGATCCCG
ATACCATTACATCCACGGGCCTGGACTTTAACAGTGACGGCGATATAGTT
GTAACGTCGCAGACAAAGTGTGGATCGACGTATACCATCATCATTCAACT
ACACCTTCAGAATATTGAACTTACGGTTCTAGAAGGGCAAGCATTTGCGC
TCGCCCTGCAGATATTGGAAACTGGAGATGTGCTGCCCCCCGATGGCTTT
CTCACCTTTGCTGTTGGGCTGAAGAGAATGTTCAATCGCGTCAATGTCGC
TAAGAACGAGCAGAAATATGTCATTGCAGTGCGCCCGACTCCTGTCGAAA
ACAACGTTCCGCTTCCAGATATTGTTCATGAGGCCGCCCAAAGATTTTTG
CCATCGTCGCAAAGCTCACGAAGTTCAATTGCTCCGTCGGCATCTCCGCG
CGCAAATGGATCTTATCAATATAAGAATATCACTATAGTAAGACCTCTGA
AAGAAAGTGGCCAAGCTCAAGTATTTGAGGCGAGAAAAGGTTCTCAAAAG
GTTGCCCTCAAAGTCTACAACGATACTGGGCGCCAGCACGATGAATCGTA
CAAAACTGAAGTCAAGATGCTCCTCAAGATGTCTTATCACCCAAATGTGG
TAACGGTTCTAGACTTCTTCGGAGAGCCGAAACCAGCTATAGCTATGGAG
TTTGTCGAGGGTGAAGACCTCTTTGATTACCTACACAACAACCGTCGCCC
CAGTGAAGCGGAAGGATTGAAACTTGTTATTGGTATTGCCGAAGGTCTGT
ATCATCTGCACAAGAATAATATTATTCATCTTGATATGAAAACTCCCAAC
ATTCTGAGACGCAGCGATGGTAGCCCCGTCATTATAGATCTTGGTCTAAG
TGCAATTCTCGAGAGAGATAACGCTCGCTCGGGGAGGAGACAAGGAGCAC
GAATAGGTAAAAACACATCTCTCAGAGATCCAGGTCATACCGTTCTGGAG
ACATATATTATGCAGAAAACTGAGGGAGGAAAGGGAAGCCTGTTGTGGAT
GGCGCCGGAAATGCTGACGCAAAGTGAGTGGAGTGATCGCACTGATGTGT
ATGCGTTTGGAATTATCATGTGGGAAGTTTTCTCCGGGAAACAGCCTTTC
ATCCCGGACTTGTCGCAAACTATCACCGCTGACGGGCTAAAAATCTTGAT
TGCAACCGGTCATCGTCCGTCTATGGCTCATGTTTCGCACATAAACGAAA
AACTGAAGAGGATTATCACGATGTGCTGGGACAACGACCCTAAGCGCCGT
CCCACAATGATGCGTGTGCTGGAGATGCTTCGTAGGACAGACCCGAAGGC
TCTGTTTGAAAGTTTCGATCAAGATAAGAATGGTGAACTTGAATTCTCGG
AGTTCACGAGCTTCCTGCAGAAGTATGCCTCTCAAATTCAGGACCCATTC
AAAATATCGGCTCTGTTCAAAGCAATCGACACAGATGGTTCAGGATCTAT
AGGATTCGACGAATTCGAAAAGTTTTGGTCGTCAGTTGAGACGCACGGAC
TCGATGCGTTCATTTCGAATCGAGGGGCGAAGAAGGTGAAGGCTGCACAA
GCGGCAAAACCAAAACGTTTCGATGATTGTGTGATTCAGTAA

Coding sequence (CDS) from alignment at NODE_1423_length_10774_cov_3.823739:2613..4604+

>Gcaud2172.t1 ID=Gcaud2172.t1|Name=Gcaud2172.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1992bp|location=Sequence derived from alignment at NODE_1423_length_10774_cov_3.823739:2613..4604+ (Gracilaria caudata M_176_S67 male)
ATGGATACGGAAGAAAGGACCGCCATTCAAAACGAGCAAAATTACTTTGG
GGGGCTACTAAGTGATAAGAAACCTCCATCAAACTGCATTACAAATGTCC
GTTTACGATTTGATTCCGATGGTGATCTTTTCTTCGCATTCACCACAGCT
GGCAATGACATATACACAGTTTGTGTAGTTCTCAAGGATAAAAAGAACTT
GGGTTGGAAAGAATGTCGGTCTTTGTTTTCAGCAATGCAAATGGCGCAAC
GGGGTACGGAAATGAGCCCCATAGTATTTGGCAATCGTCTGAAAGCAATT
GCCGAGAGCCTCGGTCGGGTTGATGGTCCAACTACATTCTTAAGCTTCTC
CATCGCCACCATAATTCCAGGGACTTCTTCCATGCGAGTAACAGATCCCG
ATACCATTACATCCACGGGCCTGGACTTTAACAGTGACGGCGATATAGTT
GTAACGTCGCAGACAAAGTGTGGATCGACGTATACCATCATCATTCAACT
ACACCTTCAGAATATTGAACTTACGGTTCTAGAAGGGCAAGCATTTGCGC
TCGCCCTGCAGATATTGGAAACTGGAGATGTGCTGCCCCCCGATGGCTTT
CTCACCTTTGCTGTTGGGCTGAAGAGAATGTTCAATCGCGTCAATGTCGC
TAAGAACGAGCAGAAATATGTCATTGCAGTGCGCCCGACTCCTGTCGAAA
ACAACGTTCCGCTTCCAGATATTGTTCATGAGGCCGCCCAAAGATTTTTG
CCATCGTCGCAAAGCTCACGAAGTTCAATTGCTCCGTCGGCATCTCCGCG
CGCAAATGGATCTTATCAATATAAGAATATCACTATAGTAAGACCTCTGA
AAGAAAGTGGCCAAGCTCAAGTATTTGAGGCGAGAAAAGGTTCTCAAAAG
GTTGCCCTCAAAGTCTACAACGATACTGGGCGCCAGCACGATGAATCGTA
CAAAACTGAAGTCAAGATGCTCCTCAAGATGTCTTATCACCCAAATGTGG
TAACGGTTCTAGACTTCTTCGGAGAGCCGAAACCAGCTATAGCTATGGAG
TTTGTCGAGGGTGAAGACCTCTTTGATTACCTACACAACAACCGTCGCCC
CAGTGAAGCGGAAGGATTGAAACTTGTTATTGGTATTGCCGAAGGTCTGT
ATCATCTGCACAAGAATAATATTATTCATCTTGATATGAAAACTCCCAAC
ATTCTGAGACGCAGCGATGGTAGCCCCGTCATTATAGATCTTGGTCTAAG
TGCAATTCTCGAGAGAGATAACGCTCGCTCGGGGAGGAGACAAGGAGCAC
GAATAGGTAAAAACACATCTCTCAGAGATCCAGGTCATACCGTTCTGGAG
ACATATATTATGCAGAAAACTGAGGGAGGAAAGGGAAGCCTGTTGTGGAT
GGCGCCGGAAATGCTGACGCAAAGTGAGTGGAGTGATCGCACTGATGTGT
ATGCGTTTGGAATTATCATGTGGGAAGTTTTCTCCGGGAAACAGCCTTTC
ATCCCGGACTTGTCGCAAACTATCACCGCTGACGGGCTAAAAATCTTGAT
TGCAACCGGTCATCGTCCGTCTATGGCTCATGTTTCGCACATAAACGAAA
AACTGAAGAGGATTATCACGATGTGCTGGGACAACGACCCTAAGCGCCGT
CCCACAATGATGCGTGTGCTGGAGATGCTTCGTAGGACAGACCCGAAGGC
TCTGTTTGAAAGTTTCGATCAAGATAAGAATGGTGAACTTGAATTCTCGG
AGTTCACGAGCTTCCTGCAGAAGTATGCCTCTCAAATTCAGGACCCATTC
AAAATATCGGCTCTGTTCAAAGCAATCGACACAGATGGTTCAGGATCTAT
AGGATTCGACGAATTCGAAAAGTTTTGGTCGTCAGTTGAGACGCACGGAC
TCGATGCGTTCATTTCGAATCGAGGGGCGAAGAAGGTGAAGGCTGCACAA
GCGGCAAAACCAAAACGTTTCGATGATTGTGTGATTCAGTAA