Gcaud9168.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9168.t1
Unique NameGcaud9168.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1421_length_10791_cov_3.905047contigNODE_1421_length_10791_cov_3.905047:8332..9471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708093.1
Preferred nameGSE1
PFAMsDUF3736
Max annot lvl2759|Eukaryota
KEGG koko:K13172
Evalue1.56e-08
EggNOG OGs28IPN@1|root,2QR0Q@2759|Eukaryota
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9168Gcaud9168Gracilaria caudata M_176_S67 malegeneNODE_1421_length_10791_cov_3.905047 8332..9471 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9168.t1.stop1Gcaud9168.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1421_length_10791_cov_3.905047 8332..8334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9168.t1.CDS1Gcaud9168.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1421_length_10791_cov_3.905047 8332..9471 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9168.t1.exon1Gcaud9168.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1421_length_10791_cov_3.905047 8332..9471 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9168.t1.start1Gcaud9168.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1421_length_10791_cov_3.905047 9469..9471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9168.t1Gcaud9168.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1421_length_10791_cov_3.905047 8332..9471 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9168.t1 ID=Gcaud9168.t1|Name=Gcaud9168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=380bp
MRATGANSDDGSQQERNHQRPTHAASAMQLLPPPGEVSRNVHNAPPPVHS
SPKHSSHRKRSISQLVPSMLARDISSLTHKPDDHASSVAQPQLRISPLRG
HHRRADKYQRITAPVEGSTDMLAAAAAGSAMHNADNHSPSKSKRRSPAND
SRTELLEENRVLRIELEHIKNKLRSADSRIKKMHKTIINHESLLHKYRSK
LVDVFESGGDAPLSLRTPDDREHKRDERSKMHAESVSNSQEEQWSAYSPS
ASFEPEQSEDIRRMHERDVMSRSERGGALAKHRRTRAPAWTALEEEIFMK
AYHKHGCQWKLYQDSLPGRSRRQIQSHGSYLIRQGKLTKKNSRPWQRRKP
RHDGAPASTVNDAQVETETQEAAHRSEEE*
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spliced messenger RNA

>Gcaud9168.t1 ID=Gcaud9168.t1|Name=Gcaud9168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:8332..9471- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCCACGGGCGCCAACAGTGATGACGGCTCACAGCAGGAGCGAAA
CCATCAGCGTCCCACACACGCCGCGTCCGCCATGCAATTGCTGCCTCCGC
CGGGCGAGGTGTCGCGCAACGTGCACAACGCCCCACCGCCCGTGCACTCG
TCGCCAAAACACTCCTCGCATCGAAAGCGCTCCATCTCGCAGCTGGTACC
GTCCATGCTTGCGCGCGACATTTCGTCGCTTACACACAAACCGGACGACC
ACGCCAGCTCGGTGGCGCAGCCGCAGTTACGCATCTCGCCGCTGCGCGGT
CACCACCGACGCGCGGACAAGTACCAGCGCATCACCGCGCCCGTGGAAGG
CAGCACCGACATGTTAGCCGCCGCCGCCGCCGGCAGCGCCATGCATAACG
CCGACAACCACTCGCCGTCCAAGTCCAAGCGTCGTTCGCCCGCCAACGAC
TCGCGCACCGAACTGCTGGAGGAGAACCGCGTGCTGCGCATTGAGTTGGA
ACACATCAAGAACAAGCTGCGTTCCGCGGACTCTCGCATCAAGAAGATGC
ACAAGACCATCATCAACCACGAGTCGCTGTTGCACAAGTACCGCTCAAAA
CTGGTGGACGTGTTTGAATCGGGCGGCGACGCTCCGTTGTCATTGCGCAC
GCCGGACGATCGCGAACACAAGCGAGATGAGCGCAGCAAGATGCACGCTG
AGAGCGTGAGCAACAGTCAGGAGGAGCAGTGGAGTGCATATTCACCCTCT
GCGTCATTCGAACCGGAGCAATCGGAGGATATTCGGCGTATGCATGAGCG
CGACGTGATGTCACGTAGTGAACGCGGTGGCGCGCTCGCAAAGCATCGAC
GCACGCGCGCGCCGGCTTGGACGGCGCTGGAGGAGGAGATTTTCATGAAG
GCGTATCATAAACATGGCTGTCAATGGAAGCTGTATCAGGATTCGCTGCC
GGGACGGTCCAGAAGACAAATACAGTCGCATGGGTCGTATCTGATTCGAC
AGGGAAAGCTGACGAAGAAGAACAGCCGGCCGTGGCAACGGCGGAAACCG
AGACACGACGGCGCGCCGGCTTCTACGGTGAATGATGCGCAAGTGGAGAC
GGAGACGCAGGAAGCGGCACATCGGTCGGAAGAGGAGTGA
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protein sequence of Gcaud9168.t1

>Gcaud9168.t1 ID=Gcaud9168.t1|Name=Gcaud9168.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=380bp
MRATGANSDDGSQQERNHQRPTHAASAMQLLPPPGEVSRNVHNAPPPVHS
SPKHSSHRKRSISQLVPSMLARDISSLTHKPDDHASSVAQPQLRISPLRG
HHRRADKYQRITAPVEGSTDMLAAAAAGSAMHNADNHSPSKSKRRSPAND
SRTELLEENRVLRIELEHIKNKLRSADSRIKKMHKTIINHESLLHKYRSK
LVDVFESGGDAPLSLRTPDDREHKRDERSKMHAESVSNSQEEQWSAYSPS
ASFEPEQSEDIRRMHERDVMSRSERGGALAKHRRTRAPAWTALEEEIFMK
AYHKHGCQWKLYQDSLPGRSRRQIQSHGSYLIRQGKLTKKNSRPWQRRKP
RHDGAPASTVNDAQVETETQEAAHRSEEE*
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mRNA from alignment at NODE_1421_length_10791_cov_3.905047:8332..9471-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9168.t1 ID=Gcaud9168.t1|Name=Gcaud9168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:8332..9471- (Gracilaria caudata M_176_S67 male)
ATGCGTGCCACGGGCGCCAACAGTGATGACGGCTCACAGCAGGAGCGAAA
CCATCAGCGTCCCACACACGCCGCGTCCGCCATGCAATTGCTGCCTCCGC
CGGGCGAGGTGTCGCGCAACGTGCACAACGCCCCACCGCCCGTGCACTCG
TCGCCAAAACACTCCTCGCATCGAAAGCGCTCCATCTCGCAGCTGGTACC
GTCCATGCTTGCGCGCGACATTTCGTCGCTTACACACAAACCGGACGACC
ACGCCAGCTCGGTGGCGCAGCCGCAGTTACGCATCTCGCCGCTGCGCGGT
CACCACCGACGCGCGGACAAGTACCAGCGCATCACCGCGCCCGTGGAAGG
CAGCACCGACATGTTAGCCGCCGCCGCCGCCGGCAGCGCCATGCATAACG
CCGACAACCACTCGCCGTCCAAGTCCAAGCGTCGTTCGCCCGCCAACGAC
TCGCGCACCGAACTGCTGGAGGAGAACCGCGTGCTGCGCATTGAGTTGGA
ACACATCAAGAACAAGCTGCGTTCCGCGGACTCTCGCATCAAGAAGATGC
ACAAGACCATCATCAACCACGAGTCGCTGTTGCACAAGTACCGCTCAAAA
CTGGTGGACGTGTTTGAATCGGGCGGCGACGCTCCGTTGTCATTGCGCAC
GCCGGACGATCGCGAACACAAGCGAGATGAGCGCAGCAAGATGCACGCTG
AGAGCGTGAGCAACAGTCAGGAGGAGCAGTGGAGTGCATATTCACCCTCT
GCGTCATTCGAACCGGAGCAATCGGAGGATATTCGGCGTATGCATGAGCG
CGACGTGATGTCACGTAGTGAACGCGGTGGCGCGCTCGCAAAGCATCGAC
GCACGCGCGCGCCGGCTTGGACGGCGCTGGAGGAGGAGATTTTCATGAAG
GCGTATCATAAACATGGCTGTCAATGGAAGCTGTATCAGGATTCGCTGCC
GGGACGGTCCAGAAGACAAATACAGTCGCATGGGTCGTATCTGATTCGAC
AGGGAAAGCTGACGAAGAAGAACAGCCGGCCGTGGCAACGGCGGAAACCG
AGACACGACGGCGCGCCGGCTTCTACGGTGAATGATGCGCAAGTGGAGAC
GGAGACGCAGGAAGCGGCACATCGGTCGGAAGAGGAGTGA
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Coding sequence (CDS) from alignment at NODE_1421_length_10791_cov_3.905047:8332..9471-

>Gcaud9168.t1 ID=Gcaud9168.t1|Name=Gcaud9168.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1140bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:8332..9471- (Gracilaria caudata M_176_S67 male)
ATGCGTGCCACGGGCGCCAACAGTGATGACGGCTCACAGCAGGAGCGAAA
CCATCAGCGTCCCACACACGCCGCGTCCGCCATGCAATTGCTGCCTCCGC
CGGGCGAGGTGTCGCGCAACGTGCACAACGCCCCACCGCCCGTGCACTCG
TCGCCAAAACACTCCTCGCATCGAAAGCGCTCCATCTCGCAGCTGGTACC
GTCCATGCTTGCGCGCGACATTTCGTCGCTTACACACAAACCGGACGACC
ACGCCAGCTCGGTGGCGCAGCCGCAGTTACGCATCTCGCCGCTGCGCGGT
CACCACCGACGCGCGGACAAGTACCAGCGCATCACCGCGCCCGTGGAAGG
CAGCACCGACATGTTAGCCGCCGCCGCCGCCGGCAGCGCCATGCATAACG
CCGACAACCACTCGCCGTCCAAGTCCAAGCGTCGTTCGCCCGCCAACGAC
TCGCGCACCGAACTGCTGGAGGAGAACCGCGTGCTGCGCATTGAGTTGGA
ACACATCAAGAACAAGCTGCGTTCCGCGGACTCTCGCATCAAGAAGATGC
ACAAGACCATCATCAACCACGAGTCGCTGTTGCACAAGTACCGCTCAAAA
CTGGTGGACGTGTTTGAATCGGGCGGCGACGCTCCGTTGTCATTGCGCAC
GCCGGACGATCGCGAACACAAGCGAGATGAGCGCAGCAAGATGCACGCTG
AGAGCGTGAGCAACAGTCAGGAGGAGCAGTGGAGTGCATATTCACCCTCT
GCGTCATTCGAACCGGAGCAATCGGAGGATATTCGGCGTATGCATGAGCG
CGACGTGATGTCACGTAGTGAACGCGGTGGCGCGCTCGCAAAGCATCGAC
GCACGCGCGCGCCGGCTTGGACGGCGCTGGAGGAGGAGATTTTCATGAAG
GCGTATCATAAACATGGCTGTCAATGGAAGCTGTATCAGGATTCGCTGCC
GGGACGGTCCAGAAGACAAATACAGTCGCATGGGTCGTATCTGATTCGAC
AGGGAAAGCTGACGAAGAAGAACAGCCGGCCGTGGCAACGGCGGAAACCG
AGACACGACGGCGCGCCGGCTTCTACGGTGAATGATGCGCAAGTGGAGAC
GGAGACGCAGGAAGCGGCACATCGGTCGGAAGAGGAGTGA
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