Gcaud7720.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7720.t1
Unique NameGcaud7720.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length210
Homology
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A2V3J381_9FLOR (dTMP kinase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J381_9FLOR)

HSP 1 Score: 306 bits (785), Expect = 8.830e-104
Identity = 146/209 (69.86%), Postives = 172/209 (82.30%), Query Frame = 0
Query:    1 MRGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLWS 209
            MRGALIVFEG DRSGK+TQTRNF NALQ AGIAVA  SPW FP RT+ +GQ+IN+YLTN   + + ALHLLFSANRWEK S IR AL+RG+TV+LDRYAYSG+AYSVA GL L WCK AD GLPAPD+V++L LS +AAAKRA YG ERYEN  MQ AVA+ F+ LRT++W+V+DAD DE TVLN ILD AMP VA+AR+ P I++LW+
Sbjct:    1 MRGALIVFEGTDRSGKSTQTRNFTNALQAAGIAVAEHSPWSFPHRTSPVGQVINAYLTNKTHLHERALHLLFSANRWEKASQIRQALRRGETVVLDRYAYSGIAYSVAKGLPLTWCKCADEGLPAPDVVVFLHLSPEAAAKRADYGSERYENKHMQTAVAKVFEQLRTEQWLVVDADADEATVLNRILDSAMPTVAKARSTPHIASLWN 209          
BLAST of Gcaud7720.t1 vs. uniprot
Match: R7Q5I2_CHOCR (dTMP kinase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5I2_CHOCR)

HSP 1 Score: 215 bits (548), Expect = 1.310e-67
Identity = 103/208 (49.52%), Postives = 133/208 (63.94%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPS-ISTLW 208
            RG LIVFEG DR GKTTQTR     L + G+ +A G PWRFPDRTT IG+++N+YLT+  ++   A HLLFSANRWEK + IR+AL RG+TV+ DRYAYSGVAYSVA GL +EWC +AD GLP PD+V++L++    A  R G+G ER+E    Q+ V   FD L+ + W V++  G              P+V     R   +  LW
Sbjct:    3 RGTLIVFEGLDRCGKTTQTRLCVEGLSRTGVKLAAGLPWRFPDRTTPIGEVLNTYLTSKTELGDEAAHLLFSANRWEKAATIREALGRGETVVYDRYAYSGVAYSVAKGLGMEWCLAADEGLPRPDVVVFLEVGVDEARGREGFGGERFEEAETQKRVGAVFDRLKGEGWSVVEGSGRMEEXXXXXXXXXXPVVQAVTGRDDEVGELW 210          
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A1S3BY65_CUCME (dTMP kinase n=2 Tax=Cucumis melo TaxID=3656 RepID=A0A1S3BY65_CUCME)

HSP 1 Score: 212 bits (539), Expect = 1.070e-65
Identity = 104/208 (50.00%), Postives = 137/208 (65.87%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLWS 209
            RGAL+V EG DR GKTTQ+      L+  G +V     WRFPDRTT++GQMI+SYL+N   +D H +HLLFSANRWEK SL+   L+ G T+ILDRY+YSGVA+S A GL LEWCK+ + GLPAPDLVLYL++S + AA+R GYG ERYE    Q  V +++  L    W ++DA      +   + +  +  V + +N   +S LWS
Sbjct:   54 RGALVVLEGLDRCGKTTQSSRLTQYLEGLGHSV---ELWRFPDRTTSVGQMISSYLSNESQLDDHTVHLLFSANRWEKRSLMETKLKGGTTLILDRYSYSGVAFSCAKGLDLEWCKAPEVGLPAPDLVLYLEISPEMAAERGGYGSERYERIDFQNKVIKSYQVLLGSNWQIVDACRPMEVIEKELQETVLDCVKKCQNGAPLSHLWS 258          
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A8B8EN95_CRAVI (dTMP kinase n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EN95_CRAVI)

HSP 1 Score: 209 bits (532), Expect = 3.490e-65
Identity = 107/208 (51.44%), Postives = 137/208 (65.87%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVAN-GLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLW 208
            RGALIVFEG D SGKTTQ R     LQ+  I   P  P+RFPDRTTAIGQMIN YL+N  D++ HA+HLLFSANRWE V  +R  L+ G T+I+DRYAYSGV+++ A  G  ++WCK+ D GLP PDLVLYL L+ +AAA R  +G+ERYE   MQ  VA+ F  L+   W  I+A+  E  +   I D     +   +++P +  LW
Sbjct:   13 RGALIVFEGCDHSGKTTQCRRLVEWLQQEQI---PVEPFRFPDRTTAIGQMINGYLSNKQDIEDHAVHLLFSANRWELVPKMRTLLESGTTLIVDRYAYSGVSFTAAKEGFTIDWCKNPDRGLPRPDLVLYLNLTPEAAAMRGTFGKERYEQTDMQLRVAKNFQLLKESYWQEINAEKTEDDMAREIRDIVFNFIPTVKDKPMLK-LW 216          
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A6D2J4B8_9BRAS (dTMP kinase n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2J4B8_9BRAS)

HSP 1 Score: 211 bits (536), Expect = 4.000e-65
Identity = 105/208 (50.48%), Postives = 136/208 (65.38%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLWS 209
            RGALIV EG DRSGK+TQ     + L+ +G    P   WRFPDR T++GQMI++YL+N   +D H +HLLFSANRWEK SL+ + L+ G T+I+DRY+YSGVA+S A GLC++WCK+ + GL APD VLYL +S + AA+R GYG ERYE    QR VA  + TLR   W +IDA      V   I +  +  V +      +S LWS
Sbjct:   63 RGALIVLEGLDRSGKSTQCSKLLSFLKASGH---PTELWRFPDRETSVGQMISAYLSNKSQLDDHTIHLLFSANRWEKRSLMEEKLKTGTTLIVDRYSYSGVAFSSAKGLCIDWCKAPEIGLLAPDSVLYLDISPERAAERGGYGDERYERVEFQRKVADFYQTLRDSSWKIIDAGEAMEEVEKKIQEVVLDKVRECATGKPLSLLWS 267          
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A2K1JMM8_PHYPA (dTMP kinase n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JMM8_PHYPA)

HSP 1 Score: 210 bits (535), Expect = 4.300e-65
Identity = 100/207 (48.31%), Postives = 142/207 (68.60%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLW 208
            RGALIV EG DRSGK++Q    A+ L+  G+AV     WRFPDRTTA+G+MI+SYL+   D+D  A+HLLFSANRWEK SL+   L+ G T+++DRY+YSGVA+SVA GL L+WCK  + GLPAPDLV YL +SA+ AA R GYG ERYE   +Q+ V + F +L+   W  +DA     ++ + + ++++  + + ++   +  +W
Sbjct:   48 RGALIVLEGLDRSGKSSQCAQLASYLESQGVAV---EAWRFPDRTTAMGRMISSYLSCQTDLDAAAIHLLFSANRWEKCSLMESKLKAGTTLVIDRYSYSGVAFSVAKGLDLDWCKGPEAGLPAPDLVFYLDISAEVAAARGGYGGERYEKLEIQKKVEKVFKSLKDTTWQSVDATQSIDSIQSVLREESVKAINECQSGKQLMQMW 251          
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A6P6VH00_COFAR (dTMP kinase n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6VH00_COFAR)

HSP 1 Score: 209 bits (533), Expect = 8.900e-65
Identity = 105/208 (50.48%), Postives = 140/208 (67.31%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLWS 209
            RGALIVFEG DR GKT+Q     ++L++ G +V     WRFPDR T +GQMI+SYL+N   +D HA+HLLFSANRWEK SL+   L+ G T+I+DRYAYSGVA+S A GL +EWCK+ + GL APDLV+YL +S + AA+R GYG ERYE    QR VA+++  L    W V+DA      +   + + A+  ++  +   S+S LWS
Sbjct:   55 RGALIVFEGLDRCGKTSQCSRLLSSLERLGHSV---ESWRFPDRDTGVGQMISSYLSNQSQLDDHAIHLLFSANRWEKRSLMEAKLKSGTTLIVDRYAYSGVAFSSAKGLDIEWCKAPELGLWAPDLVVYLDISPEKAAERGGYGGERYEQLEFQRKVAQSYRALSDASWKVVDATLPIGVIEAQLREMAVDCISTCQEGKSLSELWS 259          
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A8J5FN93_ZINOF (Uncharacterized protein n=6 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FN93_ZINOF)

HSP 1 Score: 209 bits (532), Expect = 9.850e-65
Identity = 104/208 (50.00%), Postives = 139/208 (66.83%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLWS 209
            RG+LIV EG DRSGKT+Q+    + L+  G++V     WRFPDRTTA+GQMI++YL N  ++D  A+HLLFSANRWEK SL+   L+ G ++I+DRY+YSGVA+S A GL LEWCK+ + GL APDLV+YL +SA+ A++R GYG ERYE    Q+ VA  + TL  D W +ID       V   + + A+  V   +    +S LWS
Sbjct:   46 RGSLIVLEGLDRSGKTSQSHRLVSHLKDKGVSV---ELWRFPDRTTAVGQMISAYLANESELDDRAIHLLFSANRWEKRSLMESKLRSGISLIVDRYSYSGVAFSSAKGLDLEWCKAPEVGLVAPDLVIYLDISAEKASERGGYGAERYEQLEFQKKVAETYHTLYDDSWKIIDGCLPVEAVEEQLRELALGTVLSCQKGKPLSKLWS 250          
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A175YN83_DAUCS (dTMP kinase n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YN83_DAUCS)

HSP 1 Score: 207 bits (526), Expect = 2.500e-64
Identity = 105/207 (50.72%), Postives = 134/207 (64.73%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLW 208
            RGAL+V EG DR GKT+Q+      L + G    P   +RFPDR T IGQMI+SYL +   +D   +HLLFSANRWEK SL+   L+ G T+I+DRYAYSGVA+S A GL +EWCK+ D GL APDLVLYL +S + A++R GYG ERYE    Q+ VA++++ LR   W +IDA+     V   I D  +  V   RN  S+S LW
Sbjct:   10 RGALVVLEGLDRCGKTSQSARLVKNLDELGY---PAELFRFPDRNTVIGQMISSYLNSDSQLDDRTIHLLFSANRWEKRSLMESKLRNGITLIVDRYAYSGVAFSSAKGLDIEWCKAPDMGLLAPDLVLYLDISPEKASERGGYGGERYEQLEFQKKVAKSYEILRDASWKIIDANRTVEDVQEQIRDIVLDYVKTCRNGKSLSQLW 213          
BLAST of Gcaud7720.t1 vs. uniprot
Match: A0A151SVR5_CAJCA (dTMP kinase n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SVR5_CAJCA)

HSP 1 Score: 208 bits (530), Expect = 3.540e-64
Identity = 105/208 (50.48%), Postives = 135/208 (64.90%), Query Frame = 0
Query:    2 RGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIGQMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAYSGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERYENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARNRPSISTLWS 209
            RGALIV EG DRSGKT+Q       L+  G++      WRFPDRTT +GQ I++YLTN   +D H +HLLFSANRWEK SL+   L+ G T+I+DRY+YSGVA+S A GL +EWCK+ + GL APD+V+YL +S + AA+R GYG ERYE    Q+ VA  +  LR D W V+DA      V   + +     VA+ R    +STLWS
Sbjct:   57 RGALIVIEGLDRSGKTSQCSRLVPFLEGQGVSA---ELWRFPDRTTNVGQTISAYLTNTSQLDDHTIHLLFSANRWEKRSLMETKLKTGTTLIVDRYSYSGVAFSSAKGLDIEWCKAPEIGLLAPDVVIYLGISPEKAAERGGYGGERYEKLEFQKKVADCYKVLRDDSWKVVDACQSIEDVEKQLQEIVTDCVAECRKGKPLSTLWS 261          
The following BLAST results are available for this feature:
BLAST of Gcaud7720.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J381_9FLOR8.830e-10469.86dTMP kinase n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
R7Q5I2_CHOCR1.310e-6749.52dTMP kinase n=1 Tax=Chondrus crispus TaxID=2769 Re... [more]
A0A1S3BY65_CUCME1.070e-6550.00dTMP kinase n=2 Tax=Cucumis melo TaxID=3656 RepID=... [more]
A0A8B8EN95_CRAVI3.490e-6551.44dTMP kinase n=1 Tax=Crassostrea virginica TaxID=65... [more]
A0A6D2J4B8_9BRAS4.000e-6550.48dTMP kinase n=5 Tax=Coluteocarpeae TaxID=1394505 R... [more]
A0A2K1JMM8_PHYPA4.300e-6548.31dTMP kinase n=3 Tax=Physcomitrium patens TaxID=321... [more]
A0A6P6VH00_COFAR8.900e-6550.48dTMP kinase n=3 Tax=Coffea TaxID=13442 RepID=A0A6P... [more]
A0A8J5FN93_ZINOF9.850e-6550.00Uncharacterized protein n=6 Tax=Zingiber officinal... [more]
A0A175YN83_DAUCS2.500e-6450.72dTMP kinase n=3 Tax=Daucus carota subsp. sativus T... [more]
A0A151SVR5_CAJCA3.540e-6450.48dTMP kinase n=2 Tax=Cajanus cajan TaxID=3821 RepID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039430Thymidylate kinase-like domainPFAMPF02223Thymidylate_kincoord: 8..185
e-value: 2.2E-39
score: 135.1
IPR018094Thymidylate kinaseTIGRFAMTIGR00041TIGR00041coord: 2..178
e-value: 5.9E-34
score: 115.5
IPR018094Thymidylate kinaseHAMAPMF_00165Thymidylate_kinasecoord: 4..195
score: 15.228666
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..209
e-value: 4.5E-62
score: 211.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..190
NoneNo IPR availablePANTHERPTHR10344:SF1THYMIDYLATE KINASEcoord: 2..185
NoneNo IPR availablePANTHERPTHR10344THYMIDYLATE KINASEcoord: 2..185
NoneNo IPR availableCDDcd01672TMPKcoord: 5..190
e-value: 2.27911E-28
score: 103.888
IPR018095Thymidylate kinase, conserved sitePROSITEPS01331THYMIDYLATE_KINASEcoord: 94..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1416_length_10833_cov_3.444331contigNODE_1416_length_10833_cov_3.444331:4922..5551 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7720.t1Gcaud7720.t1Gracilaria caudata M_176_S67 malemRNANODE_1416_length_10833_cov_3.444331 4922..5551 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7720.t1 ID=Gcaud7720.t1|Name=Gcaud7720.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MRGALIVFEGADRSGKTTQTRNFANALQKAGIAVAPGSPWRFPDRTTAIG
QMINSYLTNAVDVDQHALHLLFSANRWEKVSLIRDALQRGQTVILDRYAY
SGVAYSVANGLCLEWCKSADHGLPAPDLVLYLQLSAQAAAKRAGYGQERY
ENDRMQRAVARAFDTLRTDEWVVIDADGDELTVLNSILDKAMPLVAQARN
RPSISTLWS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039430Thymidylate_kin-like_dom
IPR018094Thymidylate_kinase
IPR027417P-loop_NTPase
IPR018095Thymidylate_kin_CS