Gcaud9156.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9156.t1
Unique Name	Gcaud9156.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	431

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1389_length_11009_cov_6.612566	contig	NODE_1389_length_11009_cov_6.612566:4203..5495 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9156	Gcaud9156	Gracilaria caudata M_176_S67 male	gene	NODE_1389_length_11009_cov_6.612566 4203..5495 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9156.t1.start1	Gcaud9156.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1389_length_11009_cov_6.612566 4203..4205 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9156.t1.CDS1	Gcaud9156.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1389_length_11009_cov_6.612566 4203..5495 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9156.t1.exon1	Gcaud9156.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1389_length_11009_cov_6.612566 4203..5495 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9156.t1.stop1	Gcaud9156.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1389_length_11009_cov_6.612566 5493..5495 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9156.t1	Gcaud9156.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1389_length_11009_cov_6.612566 4203..5495 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1389_length_11009_cov_6.612566:4203..5495+
coding sequence from alignment at NODE_1389_length_11009_cov_6.612566:4203..5495+

mRNA sequence

>Gcaud9156.t1 ID=Gcaud9156.t1|Name=Gcaud9156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=431bp
MMSRTIVLLLSVFGCSLAVAPPCRRDVVFPYISCETDCAWYSHSTVTDCV
QKKQFGCGLQTCSANGFQCILDSSITPACPNNEIPVKEVTLKPFRPVEFN
LAFNLSEYMKDYIFLIDACNSTRPALDAVKEELIRFVRNVSADYNVGVAI
YGSESSFDARGFSVLQTVTSNGEDVVRALQHIPVLPDGPRSSIQALSILG
GSRTVEGAIESLGFRSRNRAVVLIGDTPGREVPCDAPYFTDLRRSWGFRI
QKIVVNIASPGLDAALPALHCDHYNIPEAQNPIREGQGSSIAGEYIVHPP
VTFDKLFQMYDEHRRYIPPRGYLPGWGRRVWITQNTTYRQFGYFQMPYPP
PLSDGCNERVRMSIPSPWPELLKIPSEKDGKVRLEVEPLACRNGSFTCEV
VVKDSRSRQFLGASSSRVDGHVHIIKVKAC*

spliced messenger RNA

>Gcaud9156.t1 ID=Gcaud9156.t1|Name=Gcaud9156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at NODE_1389_length_11009_cov_6.612566:4203..5495+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCTCGTACCATTGTTCTGCTTCTTTCTGTCTTCGGCTGTTCTCT
CGCTGTCGCGCCGCCATGTCGTCGAGACGTTGTGTTCCCTTACATATCAT
GTGAGACAGACTGTGCGTGGTATTCACACTCGACGGTAACCGACTGTGTG
CAGAAGAAACAATTTGGATGCGGCCTACAAACTTGTTCTGCGAACGGCTT
CCAGTGCATTCTTGACTCCTCAATAACTCCTGCTTGCCCCAACAATGAGA
TTCCCGTCAAGGAAGTGACACTCAAGCCATTCAGGCCCGTTGAATTCAAT
CTAGCGTTCAATCTCAGTGAATACATGAAAGACTACATCTTTCTCATCGA
CGCCTGCAACTCTACGAGGCCCGCACTCGACGCAGTGAAAGAAGAGCTCA
TCAGATTTGTACGCAATGTGTCTGCGGACTACAACGTTGGGGTTGCTATA
TATGGCTCTGAGAGTTCATTCGACGCTCGAGGCTTTTCGGTGTTACAGAC
TGTGACTTCCAATGGCGAAGATGTTGTACGCGCACTGCAGCACATTCCGG
TACTGCCAGACGGACCTCGCTCTTCAATACAAGCACTTTCTATTTTGGGC
GGCTCACGCACTGTGGAAGGAGCAATCGAAAGCTTAGGGTTCCGTTCTCG
AAACAGGGCGGTGGTACTTATTGGAGATACGCCAGGAAGAGAAGTTCCTT
GTGACGCACCTTACTTCACTGATCTCAGGCGTTCGTGGGGTTTTAGAATC
CAAAAGATTGTGGTAAATATCGCAAGCCCGGGACTAGATGCTGCACTCCC
TGCTCTTCACTGCGACCACTACAACATCCCCGAGGCGCAGAATCCCATTC
GGGAAGGTCAGGGCTCATCCATTGCCGGAGAATATATAGTACATCCGCCA
GTGACGTTTGACAAGCTTTTCCAGATGTACGACGAGCATAGGCGATACAT
TCCTCCAAGAGGATACTTACCTGGGTGGGGAAGACGCGTGTGGATCACAC
AGAATACCACATATCGCCAGTTTGGGTACTTCCAGATGCCTTACCCTCCG
CCGCTTTCGGACGGATGTAACGAGCGGGTGAGGATGAGCATTCCTTCTCC
GTGGCCGGAACTGCTTAAGATTCCGAGCGAAAAGGACGGCAAAGTGCGCC
TCGAAGTTGAGCCATTGGCTTGCAGAAATGGCTCGTTTACGTGCGAAGTG
GTTGTCAAGGACTCGAGAAGTCGCCAGTTCTTGGGAGCATCTTCGAGCCG
TGTGGATGGGCATGTGCATATTATCAAGGTGAAAGCGTGCTGA

protein sequence of Gcaud9156.t1

>Gcaud9156.t1 ID=Gcaud9156.t1|Name=Gcaud9156.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=431bp
MMSRTIVLLLSVFGCSLAVAPPCRRDVVFPYISCETDCAWYSHSTVTDCV
QKKQFGCGLQTCSANGFQCILDSSITPACPNNEIPVKEVTLKPFRPVEFN
LAFNLSEYMKDYIFLIDACNSTRPALDAVKEELIRFVRNVSADYNVGVAI
YGSESSFDARGFSVLQTVTSNGEDVVRALQHIPVLPDGPRSSIQALSILG
GSRTVEGAIESLGFRSRNRAVVLIGDTPGREVPCDAPYFTDLRRSWGFRI
QKIVVNIASPGLDAALPALHCDHYNIPEAQNPIREGQGSSIAGEYIVHPP
VTFDKLFQMYDEHRRYIPPRGYLPGWGRRVWITQNTTYRQFGYFQMPYPP
PLSDGCNERVRMSIPSPWPELLKIPSEKDGKVRLEVEPLACRNGSFTCEV
VVKDSRSRQFLGASSSRVDGHVHIIKVKAC*

mRNA from alignment at NODE_1389_length_11009_cov_6.612566:4203..5495+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9156.t1 ID=Gcaud9156.t1|Name=Gcaud9156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at NODE_1389_length_11009_cov_6.612566:4203..5495+ (Gracilaria caudata M_176_S67 male)
ATGATGTCTCGTACCATTGTTCTGCTTCTTTCTGTCTTCGGCTGTTCTCT
CGCTGTCGCGCCGCCATGTCGTCGAGACGTTGTGTTCCCTTACATATCAT
GTGAGACAGACTGTGCGTGGTATTCACACTCGACGGTAACCGACTGTGTG
CAGAAGAAACAATTTGGATGCGGCCTACAAACTTGTTCTGCGAACGGCTT
CCAGTGCATTCTTGACTCCTCAATAACTCCTGCTTGCCCCAACAATGAGA
TTCCCGTCAAGGAAGTGACACTCAAGCCATTCAGGCCCGTTGAATTCAAT
CTAGCGTTCAATCTCAGTGAATACATGAAAGACTACATCTTTCTCATCGA
CGCCTGCAACTCTACGAGGCCCGCACTCGACGCAGTGAAAGAAGAGCTCA
TCAGATTTGTACGCAATGTGTCTGCGGACTACAACGTTGGGGTTGCTATA
TATGGCTCTGAGAGTTCATTCGACGCTCGAGGCTTTTCGGTGTTACAGAC
TGTGACTTCCAATGGCGAAGATGTTGTACGCGCACTGCAGCACATTCCGG
TACTGCCAGACGGACCTCGCTCTTCAATACAAGCACTTTCTATTTTGGGC
GGCTCACGCACTGTGGAAGGAGCAATCGAAAGCTTAGGGTTCCGTTCTCG
AAACAGGGCGGTGGTACTTATTGGAGATACGCCAGGAAGAGAAGTTCCTT
GTGACGCACCTTACTTCACTGATCTCAGGCGTTCGTGGGGTTTTAGAATC
CAAAAGATTGTGGTAAATATCGCAAGCCCGGGACTAGATGCTGCACTCCC
TGCTCTTCACTGCGACCACTACAACATCCCCGAGGCGCAGAATCCCATTC
GGGAAGGTCAGGGCTCATCCATTGCCGGAGAATATATAGTACATCCGCCA
GTGACGTTTGACAAGCTTTTCCAGATGTACGACGAGCATAGGCGATACAT
TCCTCCAAGAGGATACTTACCTGGGTGGGGAAGACGCGTGTGGATCACAC
AGAATACCACATATCGCCAGTTTGGGTACTTCCAGATGCCTTACCCTCCG
CCGCTTTCGGACGGATGTAACGAGCGGGTGAGGATGAGCATTCCTTCTCC
GTGGCCGGAACTGCTTAAGATTCCGAGCGAAAAGGACGGCAAAGTGCGCC
TCGAAGTTGAGCCATTGGCTTGCAGAAATGGCTCGTTTACGTGCGAAGTG
GTTGTCAAGGACTCGAGAAGTCGCCAGTTCTTGGGAGCATCTTCGAGCCG
TGTGGATGGGCATGTGCATATTATCAAGGTGAAAGCGTGCTGA

Coding sequence (CDS) from alignment at NODE_1389_length_11009_cov_6.612566:4203..5495+

>Gcaud9156.t1 ID=Gcaud9156.t1|Name=Gcaud9156.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1293bp|location=Sequence derived from alignment at NODE_1389_length_11009_cov_6.612566:4203..5495+ (Gracilaria caudata M_176_S67 male)
ATGATGTCTCGTACCATTGTTCTGCTTCTTTCTGTCTTCGGCTGTTCTCT
CGCTGTCGCGCCGCCATGTCGTCGAGACGTTGTGTTCCCTTACATATCAT
GTGAGACAGACTGTGCGTGGTATTCACACTCGACGGTAACCGACTGTGTG
CAGAAGAAACAATTTGGATGCGGCCTACAAACTTGTTCTGCGAACGGCTT
CCAGTGCATTCTTGACTCCTCAATAACTCCTGCTTGCCCCAACAATGAGA
TTCCCGTCAAGGAAGTGACACTCAAGCCATTCAGGCCCGTTGAATTCAAT
CTAGCGTTCAATCTCAGTGAATACATGAAAGACTACATCTTTCTCATCGA
CGCCTGCAACTCTACGAGGCCCGCACTCGACGCAGTGAAAGAAGAGCTCA
TCAGATTTGTACGCAATGTGTCTGCGGACTACAACGTTGGGGTTGCTATA
TATGGCTCTGAGAGTTCATTCGACGCTCGAGGCTTTTCGGTGTTACAGAC
TGTGACTTCCAATGGCGAAGATGTTGTACGCGCACTGCAGCACATTCCGG
TACTGCCAGACGGACCTCGCTCTTCAATACAAGCACTTTCTATTTTGGGC
GGCTCACGCACTGTGGAAGGAGCAATCGAAAGCTTAGGGTTCCGTTCTCG
AAACAGGGCGGTGGTACTTATTGGAGATACGCCAGGAAGAGAAGTTCCTT
GTGACGCACCTTACTTCACTGATCTCAGGCGTTCGTGGGGTTTTAGAATC
CAAAAGATTGTGGTAAATATCGCAAGCCCGGGACTAGATGCTGCACTCCC
TGCTCTTCACTGCGACCACTACAACATCCCCGAGGCGCAGAATCCCATTC
GGGAAGGTCAGGGCTCATCCATTGCCGGAGAATATATAGTACATCCGCCA
GTGACGTTTGACAAGCTTTTCCAGATGTACGACGAGCATAGGCGATACAT
TCCTCCAAGAGGATACTTACCTGGGTGGGGAAGACGCGTGTGGATCACAC
AGAATACCACATATCGCCAGTTTGGGTACTTCCAGATGCCTTACCCTCCG
CCGCTTTCGGACGGATGTAACGAGCGGGTGAGGATGAGCATTCCTTCTCC
GTGGCCGGAACTGCTTAAGATTCCGAGCGAAAAGGACGGCAAAGTGCGCC
TCGAAGTTGAGCCATTGGCTTGCAGAAATGGCTCGTTTACGTGCGAAGTG
GTTGTCAAGGACTCGAGAAGTCGCCAGTTCTTGGGAGCATCTTCGAGCCG
TGTGGATGGGCATGTGCATATTATCAAGGTGAAAGCGTGCTGA