Gcaud9155.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9155.t1
Unique NameGcaud9155.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1389_length_11009_cov_6.612566contigNODE_1389_length_11009_cov_6.612566:2138..2800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9155Gcaud9155Gracilaria caudata M_176_S67 malegeneNODE_1389_length_11009_cov_6.612566 2138..2800 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9155.t1.stop1Gcaud9155.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1389_length_11009_cov_6.612566 2138..2140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9155.t1.CDS1Gcaud9155.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1389_length_11009_cov_6.612566 2138..2800 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9155.t1.exon1Gcaud9155.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1389_length_11009_cov_6.612566 2138..2800 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9155.t1.start1Gcaud9155.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1389_length_11009_cov_6.612566 2798..2800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9155.t1Gcaud9155.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1389_length_11009_cov_6.612566 2138..2800 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9155.t1 ID=Gcaud9155.t1|Name=Gcaud9155.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=221bp
MSNGTPNEYIPISIPNGAPAPSVRSRTSKPFWWALAFFALAFTVWHGTPV
ARTGARALHRAWMTGQISFARPFRSSLRKSAGEISEYTVRTDECEPGLIC
EAVMQLEYTVDDAFGEEIVPAVGYRIRSVSGSPQSVTYATQRKLYDLYRY
VASIYAVDLFLKASDELSWGGCLLSRDATGDAIYEAANKVAKCKKTGNAE
CTFLVTMECASDYTDFSDFT*
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spliced messenger RNA

>Gcaud9155.t1 ID=Gcaud9155.t1|Name=Gcaud9155.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=663bp|location=Sequence derived from alignment at NODE_1389_length_11009_cov_6.612566:2138..2800- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAACGGTACTCCCAACGAATACATCCCAATCTCCATCCCTAATGG
TGCTCCCGCACCTTCCGTCCGCTCACGAACCTCAAAACCGTTCTGGTGGG
CGTTGGCATTCTTTGCTCTCGCTTTCACAGTGTGGCACGGTACACCTGTC
GCCCGAACTGGAGCACGAGCGCTACATCGCGCATGGATGACGGGTCAGAT
TTCCTTCGCCCGCCCATTCCGCTCCTCGCTCCGCAAGAGTGCGGGCGAAA
TCTCGGAGTACACGGTCCGAACCGACGAATGTGAGCCCGGTCTTATTTGT
GAAGCTGTGATGCAACTTGAGTATACGGTGGATGATGCTTTTGGCGAAGA
AATTGTTCCCGCCGTCGGATACAGGATTCGCTCTGTGAGTGGCTCTCCAC
AAAGCGTCACTTACGCCACGCAGCGAAAGCTGTATGATTTGTATCGCTAT
GTGGCCAGCATTTACGCAGTCGATTTGTTTCTTAAGGCTTCCGATGAGTT
AAGTTGGGGTGGTTGCTTGCTGTCACGGGATGCGACGGGAGATGCGATTT
ATGAGGCTGCTAATAAGGTTGCAAAATGTAAGAAAACGGGCAACGCGGAA
TGCACCTTTCTCGTAACCATGGAGTGTGCCAGTGACTACACGGACTTCAG
CGACTTCACCTGA
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protein sequence of Gcaud9155.t1

>Gcaud9155.t1 ID=Gcaud9155.t1|Name=Gcaud9155.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=221bp
MSNGTPNEYIPISIPNGAPAPSVRSRTSKPFWWALAFFALAFTVWHGTPV
ARTGARALHRAWMTGQISFARPFRSSLRKSAGEISEYTVRTDECEPGLIC
EAVMQLEYTVDDAFGEEIVPAVGYRIRSVSGSPQSVTYATQRKLYDLYRY
VASIYAVDLFLKASDELSWGGCLLSRDATGDAIYEAANKVAKCKKTGNAE
CTFLVTMECASDYTDFSDFT*
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mRNA from alignment at NODE_1389_length_11009_cov_6.612566:2138..2800-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9155.t1 ID=Gcaud9155.t1|Name=Gcaud9155.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=663bp|location=Sequence derived from alignment at NODE_1389_length_11009_cov_6.612566:2138..2800- (Gracilaria caudata M_176_S67 male)
ATGAGTAACGGTACTCCCAACGAATACATCCCAATCTCCATCCCTAATGG
TGCTCCCGCACCTTCCGTCCGCTCACGAACCTCAAAACCGTTCTGGTGGG
CGTTGGCATTCTTTGCTCTCGCTTTCACAGTGTGGCACGGTACACCTGTC
GCCCGAACTGGAGCACGAGCGCTACATCGCGCATGGATGACGGGTCAGAT
TTCCTTCGCCCGCCCATTCCGCTCCTCGCTCCGCAAGAGTGCGGGCGAAA
TCTCGGAGTACACGGTCCGAACCGACGAATGTGAGCCCGGTCTTATTTGT
GAAGCTGTGATGCAACTTGAGTATACGGTGGATGATGCTTTTGGCGAAGA
AATTGTTCCCGCCGTCGGATACAGGATTCGCTCTGTGAGTGGCTCTCCAC
AAAGCGTCACTTACGCCACGCAGCGAAAGCTGTATGATTTGTATCGCTAT
GTGGCCAGCATTTACGCAGTCGATTTGTTTCTTAAGGCTTCCGATGAGTT
AAGTTGGGGTGGTTGCTTGCTGTCACGGGATGCGACGGGAGATGCGATTT
ATGAGGCTGCTAATAAGGTTGCAAAATGTAAGAAAACGGGCAACGCGGAA
TGCACCTTTCTCGTAACCATGGAGTGTGCCAGTGACTACACGGACTTCAG
CGACTTCACCTGA
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Coding sequence (CDS) from alignment at NODE_1389_length_11009_cov_6.612566:2138..2800-

>Gcaud9155.t1 ID=Gcaud9155.t1|Name=Gcaud9155.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=663bp|location=Sequence derived from alignment at NODE_1389_length_11009_cov_6.612566:2138..2800- (Gracilaria caudata M_176_S67 male)
ATGAGTAACGGTACTCCCAACGAATACATCCCAATCTCCATCCCTAATGG
TGCTCCCGCACCTTCCGTCCGCTCACGAACCTCAAAACCGTTCTGGTGGG
CGTTGGCATTCTTTGCTCTCGCTTTCACAGTGTGGCACGGTACACCTGTC
GCCCGAACTGGAGCACGAGCGCTACATCGCGCATGGATGACGGGTCAGAT
TTCCTTCGCCCGCCCATTCCGCTCCTCGCTCCGCAAGAGTGCGGGCGAAA
TCTCGGAGTACACGGTCCGAACCGACGAATGTGAGCCCGGTCTTATTTGT
GAAGCTGTGATGCAACTTGAGTATACGGTGGATGATGCTTTTGGCGAAGA
AATTGTTCCCGCCGTCGGATACAGGATTCGCTCTGTGAGTGGCTCTCCAC
AAAGCGTCACTTACGCCACGCAGCGAAAGCTGTATGATTTGTATCGCTAT
GTGGCCAGCATTTACGCAGTCGATTTGTTTCTTAAGGCTTCCGATGAGTT
AAGTTGGGGTGGTTGCTTGCTGTCACGGGATGCGACGGGAGATGCGATTT
ATGAGGCTGCTAATAAGGTTGCAAAATGTAAGAAAACGGGCAACGCGGAA
TGCACCTTTCTCGTAACCATGGAGTGTGCCAGTGACTACACGGACTTCAG
CGACTTCACCTGA
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