Gcaud2231.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2231.t1
Unique NameGcaud2231.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1377_length_11054_cov_8.073611contigNODE_1377_length_11054_cov_8.073611:8471..9537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703626.1
Preferred namednj-25
PFAMsDIX,DnaJ
Max annot lvl2759|Eukaryota
GOsGO:0006810,GO:0006897,GO:0006898,GO:0008150,GO:0016192,GO:0051179,GO:0051234,GO:0098657
Evalue1.07e-05
EggNOG OGsKOG0431@1|root,KOG0431@2759|Eukaryota
Descriptionclathrin-coated pit assembly
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2231Gcaud2231Gracilaria caudata M_176_S67 malegeneNODE_1377_length_11054_cov_8.073611 8471..9537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2231.t1Gcaud2231.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1377_length_11054_cov_8.073611 8471..9537 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2231.t1.stop1Gcaud2231.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1377_length_11054_cov_8.073611 8471..8473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2231.t1.CDS1Gcaud2231.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1377_length_11054_cov_8.073611 8471..8850 -
Gcaud2231.t1.CDS2Gcaud2231.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1377_length_11054_cov_8.073611 8934..9101 -
Gcaud2231.t1.CDS3Gcaud2231.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1377_length_11054_cov_8.073611 9186..9537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2231.t1.exon1Gcaud2231.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1377_length_11054_cov_8.073611 8471..8850 -
Gcaud2231.t1.exon2Gcaud2231.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1377_length_11054_cov_8.073611 8934..9101 -
Gcaud2231.t1.exon3Gcaud2231.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1377_length_11054_cov_8.073611 9186..9537 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2231.t1.intron1Gcaud2231.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1377_length_11054_cov_8.073611 8851..8933 -
Gcaud2231.t1.intron2Gcaud2231.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1377_length_11054_cov_8.073611 9102..9185 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2231.t1.start1Gcaud2231.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1377_length_11054_cov_8.073611 9535..9537 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp
MDKLELTRAREICLRMEERNRCYIDAVRYREPVSEASASQEDVRKADDKM
VELTQRTNELATTISDAIKRRTVLIESIVADTIEFQHRFYVDSVRCMERA
IDVIGPEKLANMRSEDNRVTNPCGREPTSNSHPSNGIGKRKSTSTGVANP
CGRERTCNSYPSNGIGQRESTFIGVENPCERGRTTNSYPSNGIGKRESIY
PSGGVEQKESVRRYPTGGRRTRNEYPSSRTRVTADSAPFLSLREEELLQR
EQLRKKHEREIKARADEKLATIRERERADAKKLEENDNAGAAAERKMNA*
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spliced messenger RNA

>Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAATTAGAGCTAACAAGGGCTCGTGAGATCTGCCTTCGCATGGA
GGAAAGGAATCGTTGTTACATTGATGCCGTCCGTTACCGTGAGCCCGTCT
CAGAAGCTTCCGCCTCCCAGGAAGACGTTCGAAAGGCTGACGACAAGATG
GTCGAGCTCACGCAGCGTACCAATGAGTTAGCTACCACCATTTCGGATGC
AATCAAACGACGTACCGTTCTCATTGAATCCATCGTTGCTGATACCATTG
AGTTTCAGCATCGTTTTTACGTCGATTCTGTTCGATGTATGGAGCGTGCT
ATTGATGTCATCGGTCCCGAAAAGCTCGCCAACATGCGCAGTGAAGATAA
CAGGGTTACCAATCCATGCGGAAGGGAACCCACGAGTAATTCCCACCCGT
CCAATGGAATCGGCAAGCGAAAGTCCACCTCTACCGGTGTTGCCAATCCA
TGCGGAAGGGAACGTACGTGTAATTCCTACCCGTCCAATGGAATCGGCCA
GCGAGAGTCCACCTTTATCGGTGTTGAAAATCCATGCGAAAGGGGACGTA
CGACTAATTCCTACCCGTCCAATGGAATCGGCAAGCGAGAGTCCATCTAC
CCCAGTGGAGGTGTAGAGCAGAAAGAATCTGTCCGCCGCTATCCGACTGG
TGGTCGTCGCACCAGAAATGAATACCCAAGTTCCAGGACGCGTGTTACAG
CCGATTCTGCGCCTTTTCTTTCTCTCAGGGAGGAAGAACTTTTGCAGCGT
GAGCAGCTCAGAAAGAAGCATGAAAGAGAGATCAAGGCCAGAGCAGATGA
GAAACTTGCGACGATTCGTGAGAGAGAGAGGGCAGATGCAAAGAAACTTG
AAGAAAATGACAATGCTGGCGCAGCTGCTGAAAGGAAGATGAACGCATAG
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protein sequence of Gcaud2231.t1

>Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=300bp
MDKLELTRAREICLRMEERNRCYIDAVRYREPVSEASASQEDVRKADDKM
VELTQRTNELATTISDAIKRRTVLIESIVADTIEFQHRFYVDSVRCMERA
IDVIGPEKLANMRSEDNRVTNPCGREPTSNSHPSNGIGKRKSTSTGVANP
CGRERTCNSYPSNGIGQRESTFIGVENPCERGRTTNSYPSNGIGKRESIY
PSGGVEQKESVRRYPTGGRRTRNEYPSSRTRVTADSAPFLSLREEELLQR
EQLRKKHEREIKARADEKLATIRERERADAKKLEENDNAGAAAERKMNA*
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mRNA from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1067bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537- (Gracilaria caudata M_176_S67 male)
ATGGACAAATTAGAGCTAACAAGGGCTCGTGAGATCTGCCTTCGCATGGA
GGAAAGGAATCGTTGTTACATTGATGCCGTCCGTTACCGTGAGCCCGTCT
CAGAAGCTTCCGCCTCCCAGGAAGACGTTCGAAAGGCTGACGACAAGATG
GTCGAGCTCACGCAGCGTACCAATGAGTTAGCTACCACCATTTCGGATGC
AATCAAACGACGTACCGTTCTCATTGAATCCATCGTTGCTGATACCATTG
AGTTTCAGCATCGTTTTTACGTCGATTCTGTTCGATGTATGGAGCGTGCT
ATTGATGTCATCGGTCCCGAAAAGCTCGCCAACATGCGCAGTGAAGATAA
CAGTTTCGATGACCCGCTTCCATCTTCACCAGAACCTTAAAGTTCACGAC
GATCCGTACTTGGCTCTGCTTCCGATTTCTCCACAGGGGTTACCAATCCA
TGCGGAAGGGAACCCACGAGTAATTCCCACCCGTCCAATGGAATCGGCAA
GCGAAAGTCCACCTCTACCGGTGTTGCCAATCCATGCGGAAGGGAACGTA
CGTGTAATTCCTACCCGTCCAATGGAATCGGCCAGCGAGAGTCCACCTTT
ATCGGTGCCGCCAATCCATGCGAAAGGGAACGTACGACTAATTCCTACCG
GTCCAATGAGTCGGCAAGCGAGAGTCCACCTCTTCAGGTGTTGAAAATCC
ATGCGAAAGGGGACGTACGACTAATTCCTACCCGTCCAATGGAATCGGCA
AGCGAGAGTCCATCTACCCCAGTGGAGGTGTAGAGCAGAAAGAATCTGTC
CGCCGCTATCCGACTGGTGGTCGTCGCACCAGAAATGAATACCCAAGTTC
CAGGACGCGTGTTACAGCCGATTCTGCGCCTTTTCTTTCTCTCAGGGAGG
AAGAACTTTTGCAGCGTGAGCAGCTCAGAAAGAAGCATGAAAGAGAGATC
AAGGCCAGAGCAGATGAGAAACTTGCGACGATTCGTGAGAGAGAGAGGGC
AGATGCAAAGAAACTTGAAGAAAATGACAATGCTGGCGCAGCTGCTGAAA
GGAAGATGAACGCATAG
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Coding sequence (CDS) from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537-

>Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=900bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537- (Gracilaria caudata M_176_S67 male)
ATGGACAAATTAGAGCTAACAAGGGCTCGTGAGATCTGCCTTCGCATGGA
GGAAAGGAATCGTTGTTACATTGATGCCGTCCGTTACCGTGAGCCCGTCT
CAGAAGCTTCCGCCTCCCAGGAAGACGTTCGAAAGGCTGACGACAAGATG
GTCGAGCTCACGCAGCGTACCAATGAGTTAGCTACCACCATTTCGGATGC
AATCAAACGACGTACCGTTCTCATTGAATCCATCGTTGCTGATACCATTG
AGTTTCAGCATCGTTTTTACGTCGATTCTGTTCGATGTATGGAGCGTGCT
ATTGATGTCATCGGTCCCGAAAAGCTCGCCAACATGCGCAGTGAAGATAA
CAGGGTTACCAATCCATGCGGAAGGGAACCCACGAGTAATTCCCACCCGT
CCAATGGAATCGGCAAGCGAAAGTCCACCTCTACCGGTGTTGCCAATCCA
TGCGGAAGGGAACGTACGTGTAATTCCTACCCGTCCAATGGAATCGGCCA
GCGAGAGTCCACCTTTATCGGTGTTGAAAATCCATGCGAAAGGGGACGTA
CGACTAATTCCTACCCGTCCAATGGAATCGGCAAGCGAGAGTCCATCTAC
CCCAGTGGAGGTGTAGAGCAGAAAGAATCTGTCCGCCGCTATCCGACTGG
TGGTCGTCGCACCAGAAATGAATACCCAAGTTCCAGGACGCGTGTTACAG
CCGATTCTGCGCCTTTTCTTTCTCTCAGGGAGGAAGAACTTTTGCAGCGT
GAGCAGCTCAGAAAGAAGCATGAAAGAGAGATCAAGGCCAGAGCAGATGA
GAAACTTGCGACGATTCGTGAGAGAGAGAGGGCAGATGCAAAGAAACTTG
AAGAAAATGACAATGCTGGCGCAGCTGCTGAAAGGAAGATGAACGCATAG
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