Gcaud8081.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8081.t1
Unique NameGcaud8081.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length757
Homology
BLAST of Gcaud8081.t1 vs. uniprot
Match: A0A2V3IMX5_9FLOR (Sister chromatid cohesion 1 protein 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMX5_9FLOR)

HSP 1 Score: 637 bits (1642), Expect = 3.280e-215
Identity = 402/769 (52.28%), Postives = 510/769 (66.32%), Query Frame = 0
Query:    7 VLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKDVQAIVDALKRLDVHTHSKSTSRKRSRDVAPSISTRGGGQAAISLEDGQDLARLEMITLPMSKKRRTRTHALPTLGISRASRSRTSELEKDKDQSVASLGGMSASQAPELDVAEAMETLFPSVVVPRLGLHQRETSGTPSSGVPSQTDRTLFYRAREEDITLAPTAGPFGALRQELYLGDLPVSLESQQPSILIQPEPDLGSGEEHSG--IRPFGVGSDVPSSAA-----GXXXXXXXXXXXXXXXXEDIEPLQIGPFPLGDTPS--GRDDGSVVGGAVSSLPA---RVSVTSAKTSPEDTPSKKDVISTSTAHPSTRTKRFPRIRFDDVTELSPEQIRASLDDTSDIVLAHGEERYSRRRGRRFGTPTKRTPVPLSLLPFPESITEMWKELTEGLVEGSQSEPPASQPRSPDQQLSISNGRSPHLDEGGSVSPLQLQGMPSPLSPRRLEVPLAEEESMLVPELQPPQATPGQGSVEALREGAGRQTTPAVLSH----HSRSGSRSFPSGSGSLQTRTARLRDHIFEMITEADERSFRNAREQSSDLRRSAGT-GRR---SDSNVEEGLRTSDVAETQQAEDAGRLELHASDFQLVEDTQRDDEQLERKRAPFESIGIHAYKMLELLWAKEESTEIRADIELEDGITTFGALVKDCSRGVTARAFFNMLSLANSGFIRVSQEYPYASILITKGSFFRS 755
            +LTKKGPLGKVWVAATLGESK+PKSYAL+CRIHVLCENIE+P APFALRLSASLMLGVVRVYSRKS+FVLKDVQAIV+ALKR DVH+ SKS  R+R+RD A S ST   G A ISLEDG D+ARL++ITLP +KKRR RT+A+P    SR++RS+ +E E++      SLG +S  +A EL+V EAME LFP+VVVPRL   Q   S TP    P+Q++R+L Y+AREEDITLAP A   G L QE++LGDLPVSL+S+  SI  QP   + SG +     IRPFGV S+VPSSAA                      +D++PL+IGPF L D  S   R D S + G    LP    R SV S + + +    KK +++TS    STRTKR+  IRFD+VTELS +QIR SL+DT+DIVLA GE RY ++RG+R G   +   +P  +  FP+ IT++W+ELT  L+    SE P +  +S +++LS S G+SP   +  + SP + +  P     R  EVPL  +E M+V +    +     G+VE LR     + +PA LSH     ++SG+ S PS S SLQ RTARLRDHI E ITEAD +SF +AR   S  R S G  G +   SD N   G+ T +    ++ ED GRLEL ASDFQLVE+T++D+ + E  RA F S+GI ++K+LELL A+ ES ++  + E EDGITTF  LV+DCSRGV ARAFFNML LANSGFI+V Q   YA I+I KG  F +
Sbjct:  120 LLTKKGPLGKVWVAATLGESKIPKSYALSCRIHVLCENIERPAAPFALRLSASLMLGVVRVYSRKSEFVLKDVQAIVEALKRFDVHSVSKSMKRRRTRDTASSYSTHAHG-AGISLEDGDDVARLDLITLPAAKKRRGRTYAIPAPKRSRSTRSKDTETERNM-----SLGDISIPEATELNVMEAMENLFPAVVVPRLSPFQGGRSRTPGHLFPTQSERSLVYKAREEDITLAPPATHLGDLDQEVFLGDLPVSLDSRPASIASQPFSAVVSGNDVDSVAIRPFGVASEVPSSAAQGDQDSGAGDNLEHDLLAVPEPDDMQPLEIGPFDLEDATSHLSRRDRSPLRGP-GDLPVSSTRQSVISGQVTSDARSGKKSILTTSGHQSSTRTKRYTPIRFDEVTELSADQIRESLNDTTDIVLAPGEVRYPKKRGKRAGASPRHKFLPHPISSFPQDITDIWEELTGNLL--GISELPIADGQSLEERLS-SGGKSPPQVDAETPSPARPEIDPILPEVRAPEVPLVADEPMVVEDPFLGRGETEPGAVEVLRRDTIHRESPAALSHSRSMRNKSGTGSHPSASSSLQRRTARLRDHILEQITEADRKSFEHARLHGSSRRPSVGQQGSQPEVSDENKSVGVVTDEG--DRKNEDDGRLELRASDFQLVEETEKDELKAETSRASFLSLGIRSFKLLELLRAEAESRDVGTEAEDEDGITTFKELVQDCSRGVIARAFFNMLCLANSGFIKVRQGGAYAPIVIQKGPMFEA 876          
BLAST of Gcaud8081.t1 vs. uniprot
Match: M2XYZ1_GALSU (Synapsin I n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYZ1_GALSU)

HSP 1 Score: 97.4 bits (241), Expect = 3.490e-17
Identity = 56/136 (41.18%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKDVQAIVDALKRLDVHTHSKSTSRKRSRDVAPSISTRGGGQAAISLEDGQDLARLEMITL 136
            MFYS  +LTKKGPLG+VW+AAT+G+ ++ K +AL+  I  LC  + +PT P+ALRLSA LM+G+ R++ +K   V       +  L RLD       +  +++ D+    S    GQ  I+L  G   A LE ITL
Sbjct:    1 MFYSTEILTKKGPLGRVWLAATIGKERIQKKFALDVSISSLCAEVLRPTNPYALRLSAQLMIGICRIFEKKCSIVFISANDTIYQLSRLD-------SGARKTTDI---FSVSSSGQ--INLTKGT--ANLENITL 122          
BLAST of Gcaud8081.t1 vs. uniprot
Match: B8C9U8_THAPS (Rad21_Rec8_N domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9U8_THAPS)

HSP 1 Score: 83.2 bits (204), Expect = 1.010e-15
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKD 78
            MFYS ++L KKGPLGKVW+AA  G+ K+ +    +  I    ++I  PT P ALR+S  L+LGVVR+YSRK  +++ D
Sbjct:    1 MFYSQIILAKKGPLGKVWLAAHWGDKKITRPQIFSTDIATSVDSIVNPTVPLALRVSGHLLLGVVRIYSRKVRYLMHD 78          
BLAST of Gcaud8081.t1 vs. uniprot
Match: A0A7S0NVL9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NVL9_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 3.750e-15
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKD 78
            MFYS  VL KKGPLGK+W+AA + E KVPK   +   I    ++IE PT P ALR+S  L+LGVVR++SRK  ++L D
Sbjct:    1 MFYSQYVLAKKGPLGKIWLAAHM-EKKVPKLQIIATNIAESVDSIENPTVPMALRVSGHLLLGVVRIFSRKVHYLLTD 77          
BLAST of Gcaud8081.t1 vs. uniprot
Match: A0A5J4Z4M0_PORPP (Double-strand-break repair protein rad21-like protein 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4M0_PORPP)

HSP 1 Score: 90.5 bits (223), Expect = 4.700e-15
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKDVQAIVDALKR 88
            MFYS  +LT++GPL KVW+A+ +G+ KV K +AL   I  LCE+I  P  P ALRLS+ LM GV RVY +K   VL D    +  L+R
Sbjct:    1 MFYSSEILTRRGPLAKVWIASCMGKEKVTKKFALEADISTLCESICAPPEPLALRLSSQLMFGVCRVYEKKCTLVLTDASESLAHLRR 88          
BLAST of Gcaud8081.t1 vs. uniprot
Match: A0A7S2XQ04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ04_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.820e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKD 78
            MFYS ++L KKGPLGKVW+AA  G+ K+ +    +  I    E+I  PT P ALR+S  L+LGVVR+YSRK  +++ D
Sbjct:    1 MFYSQIILAKKGPLGKVWLAAHWGDKKLGRPQIFSTDIASSVESIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMHD 78          
BLAST of Gcaud8081.t1 vs. uniprot
Match: A0A7S0EXJ0_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EXJ0_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 5.020e-15
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKD 78
            MFYS  VL KKGPLGK+W+AA +GE KVPK   +   I     +IE P+ P ALR+S  LMLGVVR++SRK  ++L D
Sbjct:    1 MFYSQYVLAKKGPLGKIWLAAHMGEKKVPKVQVVATNIPESIAHIENPSVPMALRMSGHLMLGVVRIFSRKVTYLLSD 78          
BLAST of Gcaud8081.t1 vs. uniprot
Match: M2WXZ5_GALSU (Cohesin complex subunit SCC1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WXZ5_GALSU)

HSP 1 Score: 88.6 bits (218), Expect = 1.610e-14
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKDVQAIVDALKRLDVHTHSKSTSRKRSRDVAPSISTRGGGQAAISLEDGQDLARLEMITLPMSKKRRTR 145
            MFYS ++LTKKGPLGK+W+AA L + K+ K+   +  +   CE ++ P   FALRLS++L+LG+VR+YSRK+ ++  D +   +AL +L +     +        VAP         +AI++E   D ++L+         +R+R
Sbjct:    1 MFYSPIILTKKGPLGKIWLAAHL-QHKLSKTQVFSTDVVAACEQLQSPELSFALRLSSNLLLGIVRIYSRKAHYLFIDSR---EALNKLQLVFQGNTVDLAPGTTVAP--------YSAITMEGVDDTSQLKREESSKKSSKRSR 133          
BLAST of Gcaud8081.t1 vs. uniprot
Match: K0RNW5_THAOC (Rad21_Rec8_N domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RNW5_THAOC)

HSP 1 Score: 84.7 bits (208), Expect = 1.730e-14
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKD 78
            MFYS ++L KKGPLGKVW+AA  G+ K+ +    N  I    ++I  PT P ALR+S  L+LGVVR+YSRK  +++ D
Sbjct:    1 MFYSQIILAKKGPLGKVWLAAHWGDKKLGRPQIFNTDISASVDSIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMTD 78          
BLAST of Gcaud8081.t1 vs. uniprot
Match: A0A7S3ED03_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ED03_9RHOD)

HSP 1 Score: 79.7 bits (195), Expect = 3.000e-14
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 0
Query:    1 MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTAPFALRLSASLMLGVVRVYSRKSDFVLKDVQAIVDALK 87
            MFYS  +LT++GPL ++W+AA + ++K+ K+   +  +   CE I  P AP ALRL+++L+LGVVRVY RK+ ++L D    V  +K
Sbjct:    1 MFYSQYILTRRGPLSRIWLAAHM-QNKLTKTMVFSIDLVKACEKIIAPEAPMALRLTSNLLLGVVRVYLRKAKYLLSDCSDAVSRIK 86          
The following BLAST results are available for this feature:
BLAST of Gcaud8081.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMX5_9FLOR3.280e-21552.28Sister chromatid cohesion 1 protein 4 n=1 Tax=Grac... [more]
M2XYZ1_GALSU3.490e-1741.18Synapsin I n=1 Tax=Galdieria sulphuraria TaxID=130... [more]
B8C9U8_THAPS1.010e-1548.72Rad21_Rec8_N domain-containing protein (Fragment) ... [more]
A0A7S0NVL9_9EUKA3.750e-1553.85Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A5J4Z4M0_PORPP4.700e-1550.00Double-strand-break repair protein rad21-like prot... [more]
A0A7S2XQ04_9STRA4.820e-1550.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S0EXJ0_9EUKA5.020e-1555.13Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
M2WXZ5_GALSU1.610e-1435.17Cohesin complex subunit SCC1 n=1 Tax=Galdieria sul... [more]
K0RNW5_THAOC1.730e-1450.00Rad21_Rec8_N domain-containing protein n=1 Tax=Tha... [more]
A0A7S3ED03_9RHOD3.000e-1443.68Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006910Rad21/Rec8-like protein, N-terminalPFAMPF04825Rad21_Rec8_Ncoord: 1..93
e-value: 4.9E-28
score: 97.5
IPR023093ScpA-like, C-terminalGENE3D1.10.10.580Structural maintenance of chromosome 1. Chain Ecoord: 674..754
e-value: 5.7E-6
score: 28.0
IPR006909Rad21/Rec8-like protein, C-terminal, eukaryoticPFAMPF04824Rad21_Rec8coord: 708..750
e-value: 1.1E-9
score: 37.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 455..580
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 554..579
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 597..640
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 465..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 597..626
IPR039781Rad21/Rec8-like proteinPANTHERPTHR12585SCC1 / RAD21 FAMILY MEMBERcoord: 1..751
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 701..753

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1375_length_11068_cov_4.224287contigNODE_1375_length_11068_cov_4.224287:174..2811 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8081.t1Gcaud8081.t1Gracilaria caudata M_176_S67 malemRNANODE_1375_length_11068_cov_4.224287 174..2811 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8081.t1 ID=Gcaud8081.t1|Name=Gcaud8081.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=757bp
MFYSHLVLTKKGPLGKVWVAATLGESKVPKSYALNCRIHVLCENIEKPTA
PFALRLSASLMLGVVRVYSRKSDFVLKDVQAIVDALKRLDVHTHSKSTSR
KRSRDVAPSISTRGGGQAAISLEDGQDLARLEMITLPMSKKRRTRTHALP
TLGISRASRSRTSELEKDKDQSVASLGGMSASQAPELDVAEAMETLFPSV
VVPRLGLHQRETSGTPSSGVPSQTDRTLFYRAREEDITLAPTAGPFGALR
QELYLGDLPVSLESQQPSILIQPEPDLGSGEEHSGIRPFGVGSDVPSSAA
GDIPPPPEPDFPPLPEPEDIEPLQIGPFPLGDTPSGRDDGSVVGGAVSSL
PARVSVTSAKTSPEDTPSKKDVISTSTAHPSTRTKRFPRIRFDDVTELSP
EQIRASLDDTSDIVLAHGEERYSRRRGRRFGTPTKRTPVPLSLLPFPESI
TEMWKELTEGLVEGSQSEPPASQPRSPDQQLSISNGRSPHLDEGGSVSPL
QLQGMPSPLSPRRLEVPLAEEESMLVPELQPPQATPGQGSVEALREGAGR
QTTPAVLSHHSRSGSRSFPSGSGSLQTRTARLRDHIFEMITEADERSFRN
AREQSSDLRRSAGTGRRSDSNVEEGLRTSDVAETQQAEDAGRLELHASDF
QLVEDTQRDDEQLERKRAPFESIGIHAYKMLELLWAKEESTEIRADIELE
DGITTFGALVKDCSRGVTARAFFNMLSLANSGFIRVSQEYPYASILITKG
SFFRSE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006910Rad21_Rec8_N
IPR023093ScpA-like_C
IPR006909Rad21/Rec8_C_eu
IPR039781Rad21/Rec8-like
IPR036390WH_DNA-bd_sf