Gcaud2673.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2673.t1
Unique Name	Gcaud2673.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_136_length_44848_cov_4.574435	contig	NODE_136_length_44848_cov_4.574435:5372..6454 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2673	Gcaud2673	Gracilaria caudata M_176_S67 male	gene	NODE_136_length_44848_cov_4.574435 5372..6454 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2673.t1.stop1	Gcaud2673.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_136_length_44848_cov_4.574435 5372..5374 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2673.t1.CDS1	Gcaud2673.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_136_length_44848_cov_4.574435 5372..6454 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2673.t1.exon1	Gcaud2673.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_136_length_44848_cov_4.574435 5372..6454 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2673.t1.start1	Gcaud2673.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_136_length_44848_cov_4.574435 6452..6454 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2673.t1	Gcaud2673.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_136_length_44848_cov_4.574435 5372..6454 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_136_length_44848_cov_4.574435:5372..6454-
coding sequence from alignment at NODE_136_length_44848_cov_4.574435:5372..6454-

mRNA sequence

>Gcaud2673.t1 ID=Gcaud2673.t1|Name=Gcaud2673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MFIPLRGQFVSLIITFSFVIAELGALVMATNLNRIFESHALRMNKPVYLY
RHCLRLKLISIAVLLSFVGLETLTSYFSSTKLRDVLAEQDCLSMVPITQN
LSRPTERDAKAELISFTCLDINGTVFRQRLGSVNVNSNDVSCGEEAIFEY
NNTLRLMKLPSEMSKRCRKVELLDDCLNPEESDMDQEQETELCILYGFEE
DLFFHGNHLVEPNWEAPVPFLVTRLYTSIEPLIPRVVETMLDLQMYDAVH
EELHLRRILFTNIVRQRCEFPVGVKEGTDVPTSILALVGVVCGLFTISPL
LLYIASQRWILIDLSDPFWWASNGKELGPELKKTLKVETFDNVTRLASED
SPGASSTSWP*

spliced messenger RNA

>Gcaud2673.t1 ID=Gcaud2673.t1|Name=Gcaud2673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:5372..6454- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATCCCTTTGCGAGGACAGTTCGTGAGCCTCATTATCACATTCTC
GTTCGTTATCGCAGAACTTGGGGCTCTTGTGATGGCGACGAATCTCAATC
GCATCTTTGAAAGTCACGCTCTACGCATGAACAAACCCGTGTACCTCTAC
AGACATTGTCTACGACTGAAACTTATATCCATAGCCGTACTGCTCTCGTT
TGTTGGACTGGAAACTCTGACGTCTTACTTTTCATCGACGAAGCTGCGGG
ATGTCTTGGCCGAGCAAGATTGTCTCAGCATGGTGCCCATTACTCAAAAT
CTCTCACGTCCCACTGAAAGAGATGCCAAAGCAGAGCTGATATCGTTCAC
CTGTTTGGATATTAATGGAACCGTTTTTCGGCAACGACTCGGAAGCGTAA
ATGTAAATTCAAATGATGTTTCTTGTGGAGAAGAGGCCATTTTCGAGTAC
AACAACACTCTGCGATTGATGAAATTGCCGTCAGAGATGAGCAAGAGATG
TAGGAAAGTGGAATTGCTTGACGACTGCTTAAATCCTGAAGAGAGCGACA
TGGACCAAGAGCAAGAAACGGAACTTTGTATTCTTTACGGATTTGAGGAA
GACCTTTTTTTCCACGGAAACCATCTCGTGGAACCAAATTGGGAAGCCCC
CGTACCTTTTCTGGTGACCAGGTTATATACATCAATAGAACCATTGATCC
CCAGAGTAGTGGAAACCATGCTTGATCTACAAATGTATGATGCTGTCCAC
GAAGAACTACATTTGCGGAGAATACTGTTTACGAATATTGTGCGGCAGAG
GTGCGAGTTTCCAGTTGGTGTAAAAGAGGGAACGGATGTCCCAACCTCTA
TTCTTGCTCTTGTCGGTGTTGTGTGTGGTTTGTTCACGATATCGCCCTTG
TTGTTGTATATTGCTTCTCAGAGATGGATACTGATTGACTTGAGCGATCC
GTTTTGGTGGGCTAGCAATGGCAAGGAGCTGGGACCAGAACTCAAGAAGA
CTTTGAAGGTGGAGACTTTCGACAATGTAACTAGACTTGCCTCCGAAGAC
TCACCGGGAGCGTCATCCACTTCATGGCCGTAG

protein sequence of Gcaud2673.t1

>Gcaud2673.t1 ID=Gcaud2673.t1|Name=Gcaud2673.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MFIPLRGQFVSLIITFSFVIAELGALVMATNLNRIFESHALRMNKPVYLY
RHCLRLKLISIAVLLSFVGLETLTSYFSSTKLRDVLAEQDCLSMVPITQN
LSRPTERDAKAELISFTCLDINGTVFRQRLGSVNVNSNDVSCGEEAIFEY
NNTLRLMKLPSEMSKRCRKVELLDDCLNPEESDMDQEQETELCILYGFEE
DLFFHGNHLVEPNWEAPVPFLVTRLYTSIEPLIPRVVETMLDLQMYDAVH
EELHLRRILFTNIVRQRCEFPVGVKEGTDVPTSILALVGVVCGLFTISPL
LLYIASQRWILIDLSDPFWWASNGKELGPELKKTLKVETFDNVTRLASED
SPGASSTSWP*

mRNA from alignment at NODE_136_length_44848_cov_4.574435:5372..6454-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2673.t1 ID=Gcaud2673.t1|Name=Gcaud2673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:5372..6454- (Gracilaria caudata M_176_S67 male)
ATGTTCATCCCTTTGCGAGGACAGTTCGTGAGCCTCATTATCACATTCTC
GTTCGTTATCGCAGAACTTGGGGCTCTTGTGATGGCGACGAATCTCAATC
GCATCTTTGAAAGTCACGCTCTACGCATGAACAAACCCGTGTACCTCTAC
AGACATTGTCTACGACTGAAACTTATATCCATAGCCGTACTGCTCTCGTT
TGTTGGACTGGAAACTCTGACGTCTTACTTTTCATCGACGAAGCTGCGGG
ATGTCTTGGCCGAGCAAGATTGTCTCAGCATGGTGCCCATTACTCAAAAT
CTCTCACGTCCCACTGAAAGAGATGCCAAAGCAGAGCTGATATCGTTCAC
CTGTTTGGATATTAATGGAACCGTTTTTCGGCAACGACTCGGAAGCGTAA
ATGTAAATTCAAATGATGTTTCTTGTGGAGAAGAGGCCATTTTCGAGTAC
AACAACACTCTGCGATTGATGAAATTGCCGTCAGAGATGAGCAAGAGATG
TAGGAAAGTGGAATTGCTTGACGACTGCTTAAATCCTGAAGAGAGCGACA
TGGACCAAGAGCAAGAAACGGAACTTTGTATTCTTTACGGATTTGAGGAA
GACCTTTTTTTCCACGGAAACCATCTCGTGGAACCAAATTGGGAAGCCCC
CGTACCTTTTCTGGTGACCAGGTTATATACATCAATAGAACCATTGATCC
CCAGAGTAGTGGAAACCATGCTTGATCTACAAATGTATGATGCTGTCCAC
GAAGAACTACATTTGCGGAGAATACTGTTTACGAATATTGTGCGGCAGAG
GTGCGAGTTTCCAGTTGGTGTAAAAGAGGGAACGGATGTCCCAACCTCTA
TTCTTGCTCTTGTCGGTGTTGTGTGTGGTTTGTTCACGATATCGCCCTTG
TTGTTGTATATTGCTTCTCAGAGATGGATACTGATTGACTTGAGCGATCC
GTTTTGGTGGGCTAGCAATGGCAAGGAGCTGGGACCAGAACTCAAGAAGA
CTTTGAAGGTGGAGACTTTCGACAATGTAACTAGACTTGCCTCCGAAGAC
TCACCGGGAGCGTCATCCACTTCATGGCCGTAG

Coding sequence (CDS) from alignment at NODE_136_length_44848_cov_4.574435:5372..6454-

>Gcaud2673.t1 ID=Gcaud2673.t1|Name=Gcaud2673.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:5372..6454- (Gracilaria caudata M_176_S67 male)
ATGTTCATCCCTTTGCGAGGACAGTTCGTGAGCCTCATTATCACATTCTC
GTTCGTTATCGCAGAACTTGGGGCTCTTGTGATGGCGACGAATCTCAATC
GCATCTTTGAAAGTCACGCTCTACGCATGAACAAACCCGTGTACCTCTAC
AGACATTGTCTACGACTGAAACTTATATCCATAGCCGTACTGCTCTCGTT
TGTTGGACTGGAAACTCTGACGTCTTACTTTTCATCGACGAAGCTGCGGG
ATGTCTTGGCCGAGCAAGATTGTCTCAGCATGGTGCCCATTACTCAAAAT
CTCTCACGTCCCACTGAAAGAGATGCCAAAGCAGAGCTGATATCGTTCAC
CTGTTTGGATATTAATGGAACCGTTTTTCGGCAACGACTCGGAAGCGTAA
ATGTAAATTCAAATGATGTTTCTTGTGGAGAAGAGGCCATTTTCGAGTAC
AACAACACTCTGCGATTGATGAAATTGCCGTCAGAGATGAGCAAGAGATG
TAGGAAAGTGGAATTGCTTGACGACTGCTTAAATCCTGAAGAGAGCGACA
TGGACCAAGAGCAAGAAACGGAACTTTGTATTCTTTACGGATTTGAGGAA
GACCTTTTTTTCCACGGAAACCATCTCGTGGAACCAAATTGGGAAGCCCC
CGTACCTTTTCTGGTGACCAGGTTATATACATCAATAGAACCATTGATCC
CCAGAGTAGTGGAAACCATGCTTGATCTACAAATGTATGATGCTGTCCAC
GAAGAACTACATTTGCGGAGAATACTGTTTACGAATATTGTGCGGCAGAG
GTGCGAGTTTCCAGTTGGTGTAAAAGAGGGAACGGATGTCCCAACCTCTA
TTCTTGCTCTTGTCGGTGTTGTGTGTGGTTTGTTCACGATATCGCCCTTG
TTGTTGTATATTGCTTCTCAGAGATGGATACTGATTGACTTGAGCGATCC
GTTTTGGTGGGCTAGCAATGGCAAGGAGCTGGGACCAGAACTCAAGAAGA
CTTTGAAGGTGGAGACTTTCGACAATGTAACTAGACTTGCCTCCGAAGAC
TCACCGGGAGCGTCATCCACTTCATGGCCGTAG