Gcaud2673.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2673.t1
Unique NameGcaud2673.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length361
Homology
BLAST of Gcaud2673.t1 vs. uniprot
Match: A0A2V3IQG3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQG3_9FLOR)

HSP 1 Score: 210 bits (534), Expect = 1.700e-61
Identity = 124/349 (35.53%), Postives = 193/349 (55.30%), Query Frame = 0
Query:    1 MFIPLRGQFVSLIITFSFVIAELGALVMATNLNRIFESHALRMNKPVYLYRHCLRLKLISIAVLLSFVGLETLTSYFSSTKLRDVLAEQDCLSMVPITQNLSRPTERDAKAELISFTCLDINGTVFRQRLGSVNVNSNDVSCGEEAIFEYNNTLRLMKLPSEMSKRCRKVELLDDCLNPEESDMDQEQET---ELCILYGFEED-LFFHGNHLVEPNWEAPVPFLVTRLYTSIEPLIPRVVETMLDLQMYDAVHEELHLRRILFTNIVRQRCEFPVGVKEGTDVPTSILALVGVVCGLFTISPLLLYIASQRWILIDLSDPFWWASNGKELGPELKKTLKVETFDNVTR 345
            MFIP+R Q VSL++T  FV  EL  L +A  +  +FE+  L     + LY+HCLR ++ +  VLLSF+ LETLTS  + T  RD   ++DCL +VPITQ        D ++E I + CL+ N  +F QRLG V++  +DV+C ++  + YNN+ R+ +  S  +  C+ +           S ++ E+ET   E C+ +  E D L+       E   E    F+VT+++T I P +P+VV+  L   + D+  EELHLR ++FT++V  +C F  G  EG  VP  IL  V  +  L  +  +   + +++  LI LSDPF+WA+   E     KK ++V+   ++ R
Sbjct:    1 MFIPIRAQIVSLVVTLVFVATELCVLWVAKTITVLFETQKLCRKVTIGLYQHCLRRRVTAAVVLLSFLALETLTSTLTQTSFRDEKVQRDCLKLVPITQTSDPNVFHDQRSESILYRCLNFNRDIFEQRLGGVSLEPSDVTCEDQPYYSYNNSQRVRRSTSSATMTCKNI-----------SSLNLERETVVHEWCVFHEVERDTLYMSAQPFPESEAEEEGSFIVTKVHTDITPFVPKVVDRYLHFFVKDSETEELHLRGVMFTDLVETQCSFSSGKTEGVTVPDFILVTVAALWLLAILGAIFTKLLTRKKTLIYLSDPFFWANISLEKVTIPKKNIRVDENGDILR 338          
BLAST of Gcaud2673.t1 vs. uniprot
Match: A0A2V3IT05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 84.7 bits (208), Expect = 1.710e-14
Identity = 88/340 (25.88%), Postives = 154/340 (45.29%), Query Frame = 0
Query:    3 IPLRGQFVSLIITFSFVIAELGALVMATNLNRIFESHALRMNKPVYLYRHCLRLKLISIAVLLSFVGLETLTSYFSSTKLRDVLAEQDCLSM--VPITQNLSRPTERDAKAELISFTCLDINGTVFRQRLGSVNVNSND---VSCGEEAIFEYNNTLRLMKLPSEMSKRC-RKVELLDDCLNPEESDMDQEQETELCILYGF--EEDLFFHGNHL--------VEP--NWEAPVPFLVTRLYTSIEPLIPRVVETMLDLQMYDA-VHEELHLRRILFTNIVRQRCEFPVGVKEGTDVPTSIL--ALVGVVCGLFTISPLLLYIASQRWILIDLSDPFWWA 321
            IPL+ QFVSLI+T    +AEL         N+  E  ALR  + V +  H +R K +++  ++ F+ LE + S+FS   +       +CL++  + + +  +  T  +   + I   C+ I    F QR G+ ++N N    V CG+ A++EY N   L    + +++      +L+ +C+ P  +  ++     LC          + F   +L        V P  N +  +PFL T +  +   L       +L  + YD  V + + +R+ +F  I R++C F    K+ T VP  ++   +   +    T +  LL    +R I  D+SDP  WA
Sbjct:    4 IPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDE---DFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLL--RAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLL---RRSIFYDMSDPLHWA 335          
The following BLAST results are available for this feature:
BLAST of Gcaud2673.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IQG3_9FLOR1.700e-6135.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT05_9FLOR1.710e-1425.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 78..283
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 284..305
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 306..360
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..77
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 282..304
NoneNo IPR availableTMHMMTMhelixcoord: 53..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_136_length_44848_cov_4.574435contigNODE_136_length_44848_cov_4.574435:5372..6454 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2673.t1Gcaud2673.t1Gracilaria caudata M_176_S67 malemRNANODE_136_length_44848_cov_4.574435 5372..6454 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2673.t1 ID=Gcaud2673.t1|Name=Gcaud2673.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MFIPLRGQFVSLIITFSFVIAELGALVMATNLNRIFESHALRMNKPVYLY
RHCLRLKLISIAVLLSFVGLETLTSYFSSTKLRDVLAEQDCLSMVPITQN
LSRPTERDAKAELISFTCLDINGTVFRQRLGSVNVNSNDVSCGEEAIFEY
NNTLRLMKLPSEMSKRCRKVELLDDCLNPEESDMDQEQETELCILYGFEE
DLFFHGNHLVEPNWEAPVPFLVTRLYTSIEPLIPRVVETMLDLQMYDAVH
EELHLRRILFTNIVRQRCEFPVGVKEGTDVPTSILALVGVVCGLFTISPL
LLYIASQRWILIDLSDPFWWASNGKELGPELKKTLKVETFDNVTRLASED
SPGASSTSWP*
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