Gcaud2675.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2675.t1
Unique Name	Gcaud2675.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_136_length_44848_cov_4.574435	contig	NODE_136_length_44848_cov_4.574435:8218..10266 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2675	Gcaud2675	Gracilaria caudata M_176_S67 male	gene	NODE_136_length_44848_cov_4.574435 8218..10266 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2675.t1	Gcaud2675.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_136_length_44848_cov_4.574435 8218..10266 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2675.t1.stop1	Gcaud2675.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_136_length_44848_cov_4.574435 8218..8220 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2675.t1.CDS1	Gcaud2675.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_136_length_44848_cov_4.574435 8218..9386 -
Gcaud2675.t1.CDS2	Gcaud2675.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_136_length_44848_cov_4.574435 9909..10266 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2675.t1.exon1	Gcaud2675.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_136_length_44848_cov_4.574435 8218..9386 -
Gcaud2675.t1.exon2	Gcaud2675.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_136_length_44848_cov_4.574435 9909..10266 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2675.t1.intron1	Gcaud2675.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_136_length_44848_cov_4.574435 9387..9908 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2675.t1.start1	Gcaud2675.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_136_length_44848_cov_4.574435 10264..10266 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_136_length_44848_cov_4.574435:8218..10266-
coding sequence from alignment at NODE_136_length_44848_cov_4.574435:8218..10266-

mRNA sequence

>Gcaud2675.t1 ID=Gcaud2675.t1|Name=Gcaud2675.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=509bp
MAPRKAATASREPKLVRRVVKTVTTEQLFGGDSGGESKRTVTTEVIEETL
DGGGPLLPKVSKTIQKKSKSAGVAARRKKTASATSKASKQTSKTAAGAAK
AKAKARGVTTKSEVNTNGVVKCEVDDVVNARLLNEAYQAGMQAAQQEMNQ
LALEYYGVAPQQMVPPLHGACASLPSVVQAPGVAGSAGANVASGSHAASA
TQARASMTVAPTTRARRVKQTARKSSGMPQAAKAEAIHAGLFAPPPKSTG
IKLEHVPDGARAAAPARQARRVKQTARKSTGMAINWMDAAPSASTRAARQ
VVANAGVQRGAKSSASGGGDFVWTLVHEQGFFPDGFHSYMEPTNRNLGEF
GTRGEAVRVGKTNVGNEDYPWEDLVQGGDLQIVCDNATKWEALWSPPDSQ
YSRVTATRVCVARGRWLVEVEFGYPPSGFHSYVEPERKTVGTVATREAAV
RKARTAMGSRWGLEWTELCETGELTVVRDETERWEARWVAGDSEYAHVLA
RRLAGSGA*

spliced messenger RNA

>Gcaud2675.t1 ID=Gcaud2675.t1|Name=Gcaud2675.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:8218..10266- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAGGAAAGCCGCCACCGCGTCGAGGGAGCCGAAGCTCGTACG
GCGCGTCGTGAAAACCGTCACCACGGAGCAGTTGTTCGGCGGTGACAGTG
GCGGCGAGTCCAAACGAACCGTTACCACCGAAGTCATCGAAGAGACGTTG
GATGGTGGCGGACCGCTTTTACCAAAGGTTTCGAAGACCATTCAGAAGAA
GAGCAAGTCTGCGGGCGTTGCTGCAAGAAGGAAGAAGACCGCCTCTGCGA
CGAGTAAAGCTTCGAAGCAGACGAGCAAGACTGCTGCTGGCGCGGCAAAG
GCGAAGGCAAAAGCGAGGGGCGTGACCACCAAGTCGGAGGTCAACACGAA
CGGGGTGGTCAAGTGCGAAGTGGATGATGTGGTGAACGCGCGTTTGTTGA
ACGAAGCATATCAGGCGGGTATGCAGGCTGCACAGCAGGAGATGAACCAG
CTCGCTCTCGAGTACTACGGCGTTGCACCGCAGCAGATGGTCCCCCCGCT
GCACGGCGCGTGCGCAAGCCTTCCCAGTGTTGTCCAAGCCCCTGGTGTGG
CAGGAAGCGCAGGCGCTAATGTGGCGAGTGGCTCGCACGCTGCGAGTGCA
ACGCAAGCGAGGGCGTCCATGACCGTCGCTCCCACCACGCGCGCTAGACG
CGTCAAACAAACGGCGCGCAAGTCAAGCGGTATGCCACAGGCTGCAAAGG
CCGAGGCGATTCACGCCGGCCTCTTCGCTCCACCGCCCAAGTCCACGGGC
ATCAAGCTCGAACATGTGCCCGACGGTGCACGTGCGGCGGCACCAGCGCG
GCAGGCACGGCGAGTCAAGCAGACGGCGCGCAAGTCTACCGGCATGGCGA
TCAACTGGATGGACGCAGCACCCTCTGCAAGCACTCGCGCAGCACGGCAA
GTCGTGGCAAACGCCGGCGTTCAACGCGGCGCGAAATCGAGCGCTAGCGG
CGGCGGTGACTTCGTGTGGACGCTGGTTCACGAGCAAGGATTCTTTCCGG
ACGGCTTCCACTCGTACATGGAGCCCACAAATCGCAATCTTGGAGAGTTC
GGCACTCGCGGCGAAGCTGTGAGGGTTGGCAAGACCAACGTGGGAAACGA
GGACTACCCGTGGGAAGATCTTGTGCAAGGCGGCGATCTGCAAATTGTGT
GCGACAACGCGACGAAGTGGGAGGCGCTGTGGAGTCCGCCGGACTCGCAG
TACAGCCGCGTGACGGCCACGCGCGTGTGCGTGGCGCGCGGGCGTTGGCT
GGTGGAGGTGGAGTTCGGCTATCCACCCAGCGGCTTCCACTCGTACGTGG
AGCCGGAGCGGAAGACGGTGGGCACGGTGGCGACGAGGGAGGCGGCTGTG
CGCAAGGCCAGGACGGCGATGGGCTCCCGGTGGGGCTTGGAGTGGACGGA
GCTGTGCGAGACGGGGGAGCTGACGGTTGTGCGCGACGAGACGGAGCGGT
GGGAGGCGCGGTGGGTGGCGGGCGACTCGGAGTACGCGCACGTGCTGGCG
CGGCGGCTGGCCGGCTCGGGTGCGTGA

protein sequence of Gcaud2675.t1

>Gcaud2675.t1 ID=Gcaud2675.t1|Name=Gcaud2675.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=509bp
MAPRKAATASREPKLVRRVVKTVTTEQLFGGDSGGESKRTVTTEVIEETL
DGGGPLLPKVSKTIQKKSKSAGVAARRKKTASATSKASKQTSKTAAGAAK
AKAKARGVTTKSEVNTNGVVKCEVDDVVNARLLNEAYQAGMQAAQQEMNQ
LALEYYGVAPQQMVPPLHGACASLPSVVQAPGVAGSAGANVASGSHAASA
TQARASMTVAPTTRARRVKQTARKSSGMPQAAKAEAIHAGLFAPPPKSTG
IKLEHVPDGARAAAPARQARRVKQTARKSTGMAINWMDAAPSASTRAARQ
VVANAGVQRGAKSSASGGGDFVWTLVHEQGFFPDGFHSYMEPTNRNLGEF
GTRGEAVRVGKTNVGNEDYPWEDLVQGGDLQIVCDNATKWEALWSPPDSQ
YSRVTATRVCVARGRWLVEVEFGYPPSGFHSYVEPERKTVGTVATREAAV
RKARTAMGSRWGLEWTELCETGELTVVRDETERWEARWVAGDSEYAHVLA
RRLAGSGA*

mRNA from alignment at NODE_136_length_44848_cov_4.574435:8218..10266-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2675.t1 ID=Gcaud2675.t1|Name=Gcaud2675.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:8218..10266- (Gracilaria caudata M_176_S67 male)
ATGGCTCCCAGGAAAGCCGCCACCGCGTCGAGGGAGCCGAAGCTCGTACG
GCGCGTCGTGAAAACCGTCACCACGGAGCAGTTGTTCGGCGGTGACAGTG
GCGGCGAGTCCAAACGAACCGTTACCACCGAAGTCATCGAAGAGACGTTG
GATGGTGGCGGACCGCTTTTACCAAAGGTTTCGAAGACCATTCAGAAGAA
GAGCAAGTCTGCGGGCGTTGCTGCAAGAAGGAAGAAGACCGCCTCTGCGA
CGAGTAAAGCTTCGAAGCAGACGAGCAAGACTGCTGCTGGCGCGGCAAAG
GCGAAGGCAAAAGCGAGGGGCGTGACCACCAAGTCGGAGGTCAACACGAA
CGGGGTGGGTACGTCGTCGCCTCTGAAACGCGGGGCTAGCAAGGTTGCGA
CACCGACAGGCGCTGCAAAGAAAGCTCGCACGAAGGCCGCGGCTACGAAG
ATCATCGCCGCGAAGACAGAGAAGAAGGTAAGCGCCGCCACCACACCGAA
ATCGAAGTCAACCCCCGCCGGTGCGAGGGCAACCACGACAAAGACGCCAT
CAAAAGTGAAGTCCGAAACCAAACGCGTCTCGCCAAGATTTGCGACCAAG
ACCAAGCCCAAAAGCAAAGCGCCCACCTCCAAGTCGTCTACCACTCAGAG
TCAAACAGCCGCAGAATCCACCTCAAACGCAGCAACGCCGAAACGAAAAC
GCGCATCCGCCGTCGCAACCAAAGCCACACCGAAGAGAAACACTGACGCG
CCCACAAGCTCAACTGCAGCAAAAGCAGTGAAAAAGCAACCGACCGCGAC
CAAGCGCGAACCCAAGCTCCGCGTGCAGTCGACCATCAAAAAGAGGAGCA
AACGCGAGGATACCAAGCGTTCCAAACGAGTCAAGTGCGAAGTGGATGAT
GTGGTGAACGCGCGTTTGTTGAACGAAGCATATCAGGCGGGTATGCAGGC
TGCACAGCAGGAGATGAACCAGCTCGCTCTCGAGTACTACGGCGTTGCAC
CGCAGCAGATGGTCCCCCCGCTGCACGGCGCGTGCGCAAGCCTTCCCAGT
GTTGTCCAAGCCCCTGGTGTGGCAGGAAGCGCAGGCGCTAATGTGGCGAG
TGGCTCGCACGCTGCGAGTGCAACGCAAGCGAGGGCGTCCATGACCGTCG
CTCCCACCACGCGCGCTAGACGCGTCAAACAAACGGCGCGCAAGTCAAGC
GGTATGCCACAGGCTGCAAAGGCCGAGGCGATTCACGCCGGCCTCTTCGC
TCCACCGCCCAAGTCCACGGGCATCAAGCTCGAACATGTGCCCGACGGTG
CACGTGCGGCGGCACCAGCGCGGCAGGCACGGCGAGTCAAGCAGACGGCG
CGCAAGTCTACCGGCATGGCGATCAACTGGATGGACGCAGCACCCTCTGC
AAGCACTCGCGCAGCACGGCAAGTCGTGGCAAACGCCGGCGTTCAACGCG
GCGCGAAATCGAGCGCTAGCGGCGGCGGTGACTTCGTGTGGACGCTGGTT
CACGAGCAAGGATTCTTTCCGGACGGCTTCCACTCGTACATGGAGCCCAC
AAATCGCAATCTTGGAGAGTTCGGCACTCGCGGCGAAGCTGTGAGGGTTG
GCAAGACCAACGTGGGAAACGAGGACTACCCGTGGGAAGATCTTGTGCAA
GGCGGCGATCTGCAAATTGTGTGCGACAACGCGACGAAGTGGGAGGCGCT
GTGGAGTCCGCCGGACTCGCAGTACAGCCGCGTGACGGCCACGCGCGTGT
GCGTGGCGCGCGGGCGTTGGCTGGTGGAGGTGGAGTTCGGCTATCCACCC
AGCGGCTTCCACTCGTACGTGGAGCCGGAGCGGAAGACGGTGGGCACGGT
GGCGACGAGGGAGGCGGCTGTGCGCAAGGCCAGGACGGCGATGGGCTCCC
GGTGGGGCTTGGAGTGGACGGAGCTGTGCGAGACGGGGGAGCTGACGGTT
GTGCGCGACGAGACGGAGCGGTGGGAGGCGCGGTGGGTGGCGGGCGACTC
GGAGTACGCGCACGTGCTGGCGCGGCGGCTGGCCGGCTCGGGTGCGTGA

Coding sequence (CDS) from alignment at NODE_136_length_44848_cov_4.574435:8218..10266-

>Gcaud2675.t1 ID=Gcaud2675.t1|Name=Gcaud2675.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1527bp|location=Sequence derived from alignment at NODE_136_length_44848_cov_4.574435:8218..10266- (Gracilaria caudata M_176_S67 male)
ATGGCTCCCAGGAAAGCCGCCACCGCGTCGAGGGAGCCGAAGCTCGTACG
GCGCGTCGTGAAAACCGTCACCACGGAGCAGTTGTTCGGCGGTGACAGTG
GCGGCGAGTCCAAACGAACCGTTACCACCGAAGTCATCGAAGAGACGTTG
GATGGTGGCGGACCGCTTTTACCAAAGGTTTCGAAGACCATTCAGAAGAA
GAGCAAGTCTGCGGGCGTTGCTGCAAGAAGGAAGAAGACCGCCTCTGCGA
CGAGTAAAGCTTCGAAGCAGACGAGCAAGACTGCTGCTGGCGCGGCAAAG
GCGAAGGCAAAAGCGAGGGGCGTGACCACCAAGTCGGAGGTCAACACGAA
CGGGGTGGTCAAGTGCGAAGTGGATGATGTGGTGAACGCGCGTTTGTTGA
ACGAAGCATATCAGGCGGGTATGCAGGCTGCACAGCAGGAGATGAACCAG
CTCGCTCTCGAGTACTACGGCGTTGCACCGCAGCAGATGGTCCCCCCGCT
GCACGGCGCGTGCGCAAGCCTTCCCAGTGTTGTCCAAGCCCCTGGTGTGG
CAGGAAGCGCAGGCGCTAATGTGGCGAGTGGCTCGCACGCTGCGAGTGCA
ACGCAAGCGAGGGCGTCCATGACCGTCGCTCCCACCACGCGCGCTAGACG
CGTCAAACAAACGGCGCGCAAGTCAAGCGGTATGCCACAGGCTGCAAAGG
CCGAGGCGATTCACGCCGGCCTCTTCGCTCCACCGCCCAAGTCCACGGGC
ATCAAGCTCGAACATGTGCCCGACGGTGCACGTGCGGCGGCACCAGCGCG
GCAGGCACGGCGAGTCAAGCAGACGGCGCGCAAGTCTACCGGCATGGCGA
TCAACTGGATGGACGCAGCACCCTCTGCAAGCACTCGCGCAGCACGGCAA
GTCGTGGCAAACGCCGGCGTTCAACGCGGCGCGAAATCGAGCGCTAGCGG
CGGCGGTGACTTCGTGTGGACGCTGGTTCACGAGCAAGGATTCTTTCCGG
ACGGCTTCCACTCGTACATGGAGCCCACAAATCGCAATCTTGGAGAGTTC
GGCACTCGCGGCGAAGCTGTGAGGGTTGGCAAGACCAACGTGGGAAACGA
GGACTACCCGTGGGAAGATCTTGTGCAAGGCGGCGATCTGCAAATTGTGT
GCGACAACGCGACGAAGTGGGAGGCGCTGTGGAGTCCGCCGGACTCGCAG
TACAGCCGCGTGACGGCCACGCGCGTGTGCGTGGCGCGCGGGCGTTGGCT
GGTGGAGGTGGAGTTCGGCTATCCACCCAGCGGCTTCCACTCGTACGTGG
AGCCGGAGCGGAAGACGGTGGGCACGGTGGCGACGAGGGAGGCGGCTGTG
CGCAAGGCCAGGACGGCGATGGGCTCCCGGTGGGGCTTGGAGTGGACGGA
GCTGTGCGAGACGGGGGAGCTGACGGTTGTGCGCGACGAGACGGAGCGGT
GGGAGGCGCGGTGGGTGGCGGGCGACTCGGAGTACGCGCACGTGCTGGCG
CGGCGGCTGGCCGGCTCGGGTGCGTGA