Gcaud3325.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3325.t1
Unique Name	Gcaud3325.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	315

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_135_length_45127_cov_4.991851	contig	NODE_135_length_45127_cov_4.991851:14977..15921 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6326.BUX.s01063.7
PFAMs	TTR-52
Max annot lvl	33208\|Metazoa
Evalue	5.83e-07
EggNOG OGs	2BY1G@1\|root,2SQN1@2759\|Eukaryota,3APH1@33154\|Opisthokonta,3C14R@33208\|Metazoa,3DH4G@33213\|Bilateria,40GIJ@6231\|Nematoda,1KZKR@119089\|Chromadorea
Description	Transthyretin-like family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3325	Gcaud3325	Gracilaria caudata M_176_S67 male	gene	NODE_135_length_45127_cov_4.991851 14977..15921 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3325.t1.stop1	Gcaud3325.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_135_length_45127_cov_4.991851 14977..14979 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3325.t1.CDS1	Gcaud3325.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_135_length_45127_cov_4.991851 14977..15921 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3325.t1.exon1	Gcaud3325.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_135_length_45127_cov_4.991851 14977..15921 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3325.t1.start1	Gcaud3325.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_135_length_45127_cov_4.991851 15919..15921 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3325.t1	Gcaud3325.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_135_length_45127_cov_4.991851 14977..15921 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_135_length_45127_cov_4.991851:14977..15921-
coding sequence from alignment at NODE_135_length_45127_cov_4.991851:14977..15921-

mRNA sequence

>Gcaud3325.t1 ID=Gcaud3325.t1|Name=Gcaud3325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=315bp
MNFLSAFRLFLTATLALVALASGYTVHASGRILCDGQPLKNSQITLMDED
VAFDDYMGTSTTNEQGYFRVSGSANDVAIRKRKRRPDVYIRVDYRHSSTK
ALFEVDRTAIRGGKEESGTKHNKRGNVDFGTLHFNTEMCRLYQRFYEATH
DFYDRVGYRVPFDLKIKAQAIIHGGTPYALYDTIRIPKGESVSTTTAKHE
LAHAVRHRYDGTMAHFLKDVVKYGYTRNHHCTKTTNLGFAFNEGWAEFWA
GETACGDANGSKRVEGNVAAALKRLQDTCGVRDHDMWEVLRRNRGKIHTY
YEFEREHGYLFGCT*

spliced messenger RNA

>Gcaud3325.t1 ID=Gcaud3325.t1|Name=Gcaud3325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=945bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:14977..15921- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTCCTCTCTGCTTTTCGTCTTTTCCTCACAGCTACTCTGGCCCT
TGTCGCTCTTGCTTCGGGGTACACAGTTCACGCCTCTGGGCGGATCTTGT
GTGATGGGCAGCCTCTCAAAAACTCTCAAATCACTCTGATGGACGAAGAT
GTTGCGTTTGACGACTACATGGGCACTTCAACAACCAATGAGCAGGGATA
CTTCAGGGTTTCCGGCTCGGCCAATGACGTAGCAATCAGGAAAAGAAAGC
GTCGGCCCGATGTTTACATCCGAGTAGATTACCGTCACTCTTCCACCAAA
GCGCTGTTCGAGGTGGATCGCACCGCTATTCGTGGCGGCAAAGAGGAGTC
GGGCACCAAGCACAACAAACGAGGAAACGTGGACTTTGGCACTCTGCATT
TCAACACCGAGATGTGTCGCCTCTACCAACGCTTCTACGAAGCAACTCAC
GACTTTTACGACCGTGTGGGTTACAGAGTGCCGTTCGACCTGAAGATCAA
GGCCCAGGCCATTATTCATGGCGGTACTCCGTACGCGCTGTACGACACGA
TTCGCATTCCGAAGGGTGAGTCTGTGTCTACCACCACCGCGAAACACGAA
CTTGCACACGCGGTTCGTCATCGGTACGACGGAACAATGGCACACTTCCT
GAAAGACGTGGTGAAGTACGGGTACACTCGCAACCATCACTGCACGAAGA
CGACCAACTTGGGGTTCGCGTTCAACGAGGGCTGGGCGGAATTCTGGGCG
GGCGAGACGGCGTGCGGTGATGCAAACGGGTCGAAGAGAGTGGAGGGTAA
TGTGGCGGCTGCTCTAAAAAGACTGCAGGACACTTGTGGAGTTAGGGACC
ATGATATGTGGGAAGTGCTGCGTCGCAATCGCGGCAAGATTCACACGTAC
TACGAGTTCGAGCGTGAGCATGGCTACTTGTTTGGATGCACTTGA

protein sequence of Gcaud3325.t1

>Gcaud3325.t1 ID=Gcaud3325.t1|Name=Gcaud3325.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=315bp
MNFLSAFRLFLTATLALVALASGYTVHASGRILCDGQPLKNSQITLMDED
VAFDDYMGTSTTNEQGYFRVSGSANDVAIRKRKRRPDVYIRVDYRHSSTK
ALFEVDRTAIRGGKEESGTKHNKRGNVDFGTLHFNTEMCRLYQRFYEATH
DFYDRVGYRVPFDLKIKAQAIIHGGTPYALYDTIRIPKGESVSTTTAKHE
LAHAVRHRYDGTMAHFLKDVVKYGYTRNHHCTKTTNLGFAFNEGWAEFWA
GETACGDANGSKRVEGNVAAALKRLQDTCGVRDHDMWEVLRRNRGKIHTY
YEFEREHGYLFGCT*

mRNA from alignment at NODE_135_length_45127_cov_4.991851:14977..15921-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3325.t1 ID=Gcaud3325.t1|Name=Gcaud3325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=945bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:14977..15921- (Gracilaria caudata M_176_S67 male)
ATGAACTTCCTCTCTGCTTTTCGTCTTTTCCTCACAGCTACTCTGGCCCT
TGTCGCTCTTGCTTCGGGGTACACAGTTCACGCCTCTGGGCGGATCTTGT
GTGATGGGCAGCCTCTCAAAAACTCTCAAATCACTCTGATGGACGAAGAT
GTTGCGTTTGACGACTACATGGGCACTTCAACAACCAATGAGCAGGGATA
CTTCAGGGTTTCCGGCTCGGCCAATGACGTAGCAATCAGGAAAAGAAAGC
GTCGGCCCGATGTTTACATCCGAGTAGATTACCGTCACTCTTCCACCAAA
GCGCTGTTCGAGGTGGATCGCACCGCTATTCGTGGCGGCAAAGAGGAGTC
GGGCACCAAGCACAACAAACGAGGAAACGTGGACTTTGGCACTCTGCATT
TCAACACCGAGATGTGTCGCCTCTACCAACGCTTCTACGAAGCAACTCAC
GACTTTTACGACCGTGTGGGTTACAGAGTGCCGTTCGACCTGAAGATCAA
GGCCCAGGCCATTATTCATGGCGGTACTCCGTACGCGCTGTACGACACGA
TTCGCATTCCGAAGGGTGAGTCTGTGTCTACCACCACCGCGAAACACGAA
CTTGCACACGCGGTTCGTCATCGGTACGACGGAACAATGGCACACTTCCT
GAAAGACGTGGTGAAGTACGGGTACACTCGCAACCATCACTGCACGAAGA
CGACCAACTTGGGGTTCGCGTTCAACGAGGGCTGGGCGGAATTCTGGGCG
GGCGAGACGGCGTGCGGTGATGCAAACGGGTCGAAGAGAGTGGAGGGTAA
TGTGGCGGCTGCTCTAAAAAGACTGCAGGACACTTGTGGAGTTAGGGACC
ATGATATGTGGGAAGTGCTGCGTCGCAATCGCGGCAAGATTCACACGTAC
TACGAGTTCGAGCGTGAGCATGGCTACTTGTTTGGATGCACTTGA

Coding sequence (CDS) from alignment at NODE_135_length_45127_cov_4.991851:14977..15921-

>Gcaud3325.t1 ID=Gcaud3325.t1|Name=Gcaud3325.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=945bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:14977..15921- (Gracilaria caudata M_176_S67 male)
ATGAACTTCCTCTCTGCTTTTCGTCTTTTCCTCACAGCTACTCTGGCCCT
TGTCGCTCTTGCTTCGGGGTACACAGTTCACGCCTCTGGGCGGATCTTGT
GTGATGGGCAGCCTCTCAAAAACTCTCAAATCACTCTGATGGACGAAGAT
GTTGCGTTTGACGACTACATGGGCACTTCAACAACCAATGAGCAGGGATA
CTTCAGGGTTTCCGGCTCGGCCAATGACGTAGCAATCAGGAAAAGAAAGC
GTCGGCCCGATGTTTACATCCGAGTAGATTACCGTCACTCTTCCACCAAA
GCGCTGTTCGAGGTGGATCGCACCGCTATTCGTGGCGGCAAAGAGGAGTC
GGGCACCAAGCACAACAAACGAGGAAACGTGGACTTTGGCACTCTGCATT
TCAACACCGAGATGTGTCGCCTCTACCAACGCTTCTACGAAGCAACTCAC
GACTTTTACGACCGTGTGGGTTACAGAGTGCCGTTCGACCTGAAGATCAA
GGCCCAGGCCATTATTCATGGCGGTACTCCGTACGCGCTGTACGACACGA
TTCGCATTCCGAAGGGTGAGTCTGTGTCTACCACCACCGCGAAACACGAA
CTTGCACACGCGGTTCGTCATCGGTACGACGGAACAATGGCACACTTCCT
GAAAGACGTGGTGAAGTACGGGTACACTCGCAACCATCACTGCACGAAGA
CGACCAACTTGGGGTTCGCGTTCAACGAGGGCTGGGCGGAATTCTGGGCG
GGCGAGACGGCGTGCGGTGATGCAAACGGGTCGAAGAGAGTGGAGGGTAA
TGTGGCGGCTGCTCTAAAAAGACTGCAGGACACTTGTGGAGTTAGGGACC
ATGATATGTGGGAAGTGCTGCGTCGCAATCGCGGCAAGATTCACACGTAC
TACGAGTTCGAGCGTGAGCATGGCTACTTGTTTGGATGCACTTGA