Gcaud1212.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1212.t1
Unique Name	Gcaud1212.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	642

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1358_length_11186_cov_4.670302	contig	NODE_1358_length_11186_cov_4.670302:830..2755 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1212	Gcaud1212	Gracilaria caudata M_176_S67 male	gene	NODE_1358_length_11186_cov_4.670302 830..2755 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1212.t1.CDS1	Gcaud1212.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1358_length_11186_cov_4.670302 830..2755 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1212.t1.exon1	Gcaud1212.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1358_length_11186_cov_4.670302 830..2755 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1212.t1.start1	Gcaud1212.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1358_length_11186_cov_4.670302 2753..2755 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1212.t1	Gcaud1212.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1358_length_11186_cov_4.670302 830..2755 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1358_length_11186_cov_4.670302:830..2755-
coding sequence from alignment at NODE_1358_length_11186_cov_4.670302:830..2755-

mRNA sequence

>Gcaud1212.t1 ID=Gcaud1212.t1|Name=Gcaud1212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=642bp
MQRPLSKGCQQFLSVCREQYFVTALETNEKRHSLGQFPSRKEQMNLYVGL
HGMDIKETVHWRYNIENCKRQYDIDLYPLVKDGLTDIFIAGHRQHNLNIA
AQTLQGTRSFIPTFDYLARERIIPIAVSYKHGADEQLSLQRLFDGICALD
YFLEPGTRYVLWIDLVPSRGLIKRRQRQDASWLKRGLLPYQLFVVLCLDN
STSGRAREDYVNSFWLNIEGVLATLGSGMVMVGPDLKRNAVASWLFEDKT
SDIPIEYAQIVANDEEMQVAFRPGNTMDCDDSLKFLLQNAVKGAYDNTTA
RYKEDKDDLIRMANCVFHTGSGTDFGKVAYDLDYSDYDELFRTLSSDTNP
ESVWLPLHRSGRVFDSTMPGEHTMYPTYISSFVDPESSTCVPQWLPKHCR
YFRTPSEPAGVYDIWIHFQSHGKIVAVIAMAVIACGPGDTKRATSDGRLH
VKILQTKEIASKIADTRAYGVERVIDLWDCRVPILLRDVLRMLDGQALSL
TGVRRFLKHSEVECPELTSFFVSEKFESKLSDNAHAVVVGTAEDVEDTSD
IATIASDDVEQEDEDENDNGNRRMSPDTLGIWFKYFYRMRMIGDAGPYSD
NEEEQKGESSSNAGAAGLEREQQSTDGNNNRTESTTYRFHIE

spliced messenger RNA

>Gcaud1212.t1 ID=Gcaud1212.t1|Name=Gcaud1212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:830..2755- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACGACCGCTTTCAAAGGGATGTCAACAGTTTCTGAGCGTGTGCCG
CGAGCAGTACTTTGTGACCGCTCTCGAAACCAACGAGAAGCGACATAGTC
TCGGGCAATTTCCATCCAGGAAAGAACAGATGAATCTCTACGTTGGCCTT
CATGGAATGGACATTAAGGAAACTGTACACTGGCGTTACAACATTGAAAA
CTGTAAACGACAATACGACATCGATCTGTACCCGTTGGTGAAGGATGGTC
TCACAGACATTTTCATCGCCGGACATCGCCAACATAACCTCAACATCGCG
GCGCAGACACTTCAGGGAACTCGCAGCTTTATTCCTACCTTTGATTACCT
CGCTCGAGAACGAATTATACCTATTGCTGTTTCTTACAAGCACGGAGCGG
ATGAGCAGCTGAGCCTGCAAAGACTGTTCGATGGAATCTGTGCCTTAGAC
TACTTCCTAGAACCAGGTACGAGGTATGTGTTGTGGATAGACCTTGTCCC
GTCCAGAGGTTTAATCAAGCGCAGGCAAAGACAAGACGCTTCGTGGTTGA
AACGCGGCCTGCTTCCCTACCAGCTGTTTGTCGTGCTTTGTTTGGACAAT
TCCACTTCAGGCCGCGCCCGAGAAGATTACGTGAACAGCTTTTGGCTCAA
TATCGAGGGCGTGCTGGCAACGCTTGGTTCTGGTATGGTCATGGTTGGTC
CCGATCTCAAGAGAAACGCTGTGGCTTCATGGTTATTCGAAGACAAGACA
TCTGACATTCCTATCGAGTACGCGCAGATTGTGGCAAATGACGAAGAAAT
GCAAGTCGCCTTTCGTCCAGGAAACACCATGGACTGCGATGATTCGCTTA
AGTTTTTGTTGCAGAATGCAGTTAAAGGAGCTTACGATAATACGACCGCG
AGGTATAAAGAGGACAAAGATGATCTGATCCGCATGGCTAACTGTGTATT
TCACACTGGATCTGGCACGGACTTTGGCAAAGTTGCTTATGACCTCGACT
ATTCAGACTATGATGAACTCTTTCGAACACTTTCTTCTGATACAAATCCA
GAGAGTGTTTGGCTCCCGCTGCACAGATCAGGACGCGTCTTTGACAGCAC
AATGCCTGGAGAGCATACAATGTACCCAACATACATATCGTCATTTGTCG
ACCCGGAATCAAGTACTTGCGTCCCTCAGTGGCTACCAAAGCATTGTCGA
TACTTCCGCACTCCTTCTGAGCCAGCTGGAGTGTACGACATTTGGATTCA
TTTTCAGAGCCATGGAAAGATCGTCGCGGTCATTGCCATGGCTGTTATAG
CCTGTGGACCGGGGGATACAAAGCGAGCAACTTCGGATGGAAGACTTCAC
GTCAAGATATTGCAAACAAAAGAAATAGCTTCCAAAATTGCCGACACGAG
AGCTTACGGTGTAGAGCGAGTGATTGATCTTTGGGACTGCAGAGTGCCGA
TCTTGCTTAGAGATGTGTTAAGGATGCTGGACGGACAGGCCCTTAGCTTG
ACAGGGGTGAGGCGATTTCTGAAGCACAGCGAGGTAGAATGCCCTGAGCT
TACCAGTTTCTTTGTTTCAGAGAAATTTGAGTCTAAGCTGAGTGATAACG
CGCATGCAGTTGTCGTGGGTACAGCCGAAGACGTGGAAGACACTTCAGAT
ATCGCGACAATTGCTTCCGATGACGTCGAACAGGAGGACGAAGATGAGAA
TGACAATGGAAATAGGAGAATGTCCCCTGACACGTTAGGTATATGGTTCA
AGTACTTCTATAGGATGAGAATGATTGGAGACGCTGGACCATACTCTGAC
AATGAGGAAGAGCAGAAAGGAGAGTCTTCATCAAACGCAGGAGCAGCTGG
ACTAGAACGCGAACAACAGTCAACTGATGGGAACAACAACAGAACCGAAA
GTACAACATATCGATTTCACATCGAG

protein sequence of Gcaud1212.t1

>Gcaud1212.t1 ID=Gcaud1212.t1|Name=Gcaud1212.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=642bp
MQRPLSKGCQQFLSVCREQYFVTALETNEKRHSLGQFPSRKEQMNLYVGL
HGMDIKETVHWRYNIENCKRQYDIDLYPLVKDGLTDIFIAGHRQHNLNIA
AQTLQGTRSFIPTFDYLARERIIPIAVSYKHGADEQLSLQRLFDGICALD
YFLEPGTRYVLWIDLVPSRGLIKRRQRQDASWLKRGLLPYQLFVVLCLDN
STSGRAREDYVNSFWLNIEGVLATLGSGMVMVGPDLKRNAVASWLFEDKT
SDIPIEYAQIVANDEEMQVAFRPGNTMDCDDSLKFLLQNAVKGAYDNTTA
RYKEDKDDLIRMANCVFHTGSGTDFGKVAYDLDYSDYDELFRTLSSDTNP
ESVWLPLHRSGRVFDSTMPGEHTMYPTYISSFVDPESSTCVPQWLPKHCR
YFRTPSEPAGVYDIWIHFQSHGKIVAVIAMAVIACGPGDTKRATSDGRLH
VKILQTKEIASKIADTRAYGVERVIDLWDCRVPILLRDVLRMLDGQALSL
TGVRRFLKHSEVECPELTSFFVSEKFESKLSDNAHAVVVGTAEDVEDTSD
IATIASDDVEQEDEDENDNGNRRMSPDTLGIWFKYFYRMRMIGDAGPYSD
NEEEQKGESSSNAGAAGLEREQQSTDGNNNRTESTTYRFHIE

mRNA from alignment at NODE_1358_length_11186_cov_4.670302:830..2755-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1212.t1 ID=Gcaud1212.t1|Name=Gcaud1212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:830..2755- (Gracilaria caudata M_176_S67 male)
ATGCAACGACCGCTTTCAAAGGGATGTCAACAGTTTCTGAGCGTGTGCCG
CGAGCAGTACTTTGTGACCGCTCTCGAAACCAACGAGAAGCGACATAGTC
TCGGGCAATTTCCATCCAGGAAAGAACAGATGAATCTCTACGTTGGCCTT
CATGGAATGGACATTAAGGAAACTGTACACTGGCGTTACAACATTGAAAA
CTGTAAACGACAATACGACATCGATCTGTACCCGTTGGTGAAGGATGGTC
TCACAGACATTTTCATCGCCGGACATCGCCAACATAACCTCAACATCGCG
GCGCAGACACTTCAGGGAACTCGCAGCTTTATTCCTACCTTTGATTACCT
CGCTCGAGAACGAATTATACCTATTGCTGTTTCTTACAAGCACGGAGCGG
ATGAGCAGCTGAGCCTGCAAAGACTGTTCGATGGAATCTGTGCCTTAGAC
TACTTCCTAGAACCAGGTACGAGGTATGTGTTGTGGATAGACCTTGTCCC
GTCCAGAGGTTTAATCAAGCGCAGGCAAAGACAAGACGCTTCGTGGTTGA
AACGCGGCCTGCTTCCCTACCAGCTGTTTGTCGTGCTTTGTTTGGACAAT
TCCACTTCAGGCCGCGCCCGAGAAGATTACGTGAACAGCTTTTGGCTCAA
TATCGAGGGCGTGCTGGCAACGCTTGGTTCTGGTATGGTCATGGTTGGTC
CCGATCTCAAGAGAAACGCTGTGGCTTCATGGTTATTCGAAGACAAGACA
TCTGACATTCCTATCGAGTACGCGCAGATTGTGGCAAATGACGAAGAAAT
GCAAGTCGCCTTTCGTCCAGGAAACACCATGGACTGCGATGATTCGCTTA
AGTTTTTGTTGCAGAATGCAGTTAAAGGAGCTTACGATAATACGACCGCG
AGGTATAAAGAGGACAAAGATGATCTGATCCGCATGGCTAACTGTGTATT
TCACACTGGATCTGGCACGGACTTTGGCAAAGTTGCTTATGACCTCGACT
ATTCAGACTATGATGAACTCTTTCGAACACTTTCTTCTGATACAAATCCA
GAGAGTGTTTGGCTCCCGCTGCACAGATCAGGACGCGTCTTTGACAGCAC
AATGCCTGGAGAGCATACAATGTACCCAACATACATATCGTCATTTGTCG
ACCCGGAATCAAGTACTTGCGTCCCTCAGTGGCTACCAAAGCATTGTCGA
TACTTCCGCACTCCTTCTGAGCCAGCTGGAGTGTACGACATTTGGATTCA
TTTTCAGAGCCATGGAAAGATCGTCGCGGTCATTGCCATGGCTGTTATAG
CCTGTGGACCGGGGGATACAAAGCGAGCAACTTCGGATGGAAGACTTCAC
GTCAAGATATTGCAAACAAAAGAAATAGCTTCCAAAATTGCCGACACGAG
AGCTTACGGTGTAGAGCGAGTGATTGATCTTTGGGACTGCAGAGTGCCGA
TCTTGCTTAGAGATGTGTTAAGGATGCTGGACGGACAGGCCCTTAGCTTG
ACAGGGGTGAGGCGATTTCTGAAGCACAGCGAGGTAGAATGCCCTGAGCT
TACCAGTTTCTTTGTTTCAGAGAAATTTGAGTCTAAGCTGAGTGATAACG
CGCATGCAGTTGTCGTGGGTACAGCCGAAGACGTGGAAGACACTTCAGAT
ATCGCGACAATTGCTTCCGATGACGTCGAACAGGAGGACGAAGATGAGAA
TGACAATGGAAATAGGAGAATGTCCCCTGACACGTTAGGTATATGGTTCA
AGTACTTCTATAGGATGAGAATGATTGGAGACGCTGGACCATACTCTGAC
AATGAGGAAGAGCAGAAAGGAGAGTCTTCATCAAACGCAGGAGCAGCTGG
ACTAGAACGCGAACAACAGTCAACTGATGGGAACAACAACAGAACCGAAA
GTACAACATATCGATTTCACATCGAG

Coding sequence (CDS) from alignment at NODE_1358_length_11186_cov_4.670302:830..2755-

>Gcaud1212.t1 ID=Gcaud1212.t1|Name=Gcaud1212.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1926bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:830..2755- (Gracilaria caudata M_176_S67 male)
ATGCAACGACCGCTTTCAAAGGGATGTCAACAGTTTCTGAGCGTGTGCCG
CGAGCAGTACTTTGTGACCGCTCTCGAAACCAACGAGAAGCGACATAGTC
TCGGGCAATTTCCATCCAGGAAAGAACAGATGAATCTCTACGTTGGCCTT
CATGGAATGGACATTAAGGAAACTGTACACTGGCGTTACAACATTGAAAA
CTGTAAACGACAATACGACATCGATCTGTACCCGTTGGTGAAGGATGGTC
TCACAGACATTTTCATCGCCGGACATCGCCAACATAACCTCAACATCGCG
GCGCAGACACTTCAGGGAACTCGCAGCTTTATTCCTACCTTTGATTACCT
CGCTCGAGAACGAATTATACCTATTGCTGTTTCTTACAAGCACGGAGCGG
ATGAGCAGCTGAGCCTGCAAAGACTGTTCGATGGAATCTGTGCCTTAGAC
TACTTCCTAGAACCAGGTACGAGGTATGTGTTGTGGATAGACCTTGTCCC
GTCCAGAGGTTTAATCAAGCGCAGGCAAAGACAAGACGCTTCGTGGTTGA
AACGCGGCCTGCTTCCCTACCAGCTGTTTGTCGTGCTTTGTTTGGACAAT
TCCACTTCAGGCCGCGCCCGAGAAGATTACGTGAACAGCTTTTGGCTCAA
TATCGAGGGCGTGCTGGCAACGCTTGGTTCTGGTATGGTCATGGTTGGTC
CCGATCTCAAGAGAAACGCTGTGGCTTCATGGTTATTCGAAGACAAGACA
TCTGACATTCCTATCGAGTACGCGCAGATTGTGGCAAATGACGAAGAAAT
GCAAGTCGCCTTTCGTCCAGGAAACACCATGGACTGCGATGATTCGCTTA
AGTTTTTGTTGCAGAATGCAGTTAAAGGAGCTTACGATAATACGACCGCG
AGGTATAAAGAGGACAAAGATGATCTGATCCGCATGGCTAACTGTGTATT
TCACACTGGATCTGGCACGGACTTTGGCAAAGTTGCTTATGACCTCGACT
ATTCAGACTATGATGAACTCTTTCGAACACTTTCTTCTGATACAAATCCA
GAGAGTGTTTGGCTCCCGCTGCACAGATCAGGACGCGTCTTTGACAGCAC
AATGCCTGGAGAGCATACAATGTACCCAACATACATATCGTCATTTGTCG
ACCCGGAATCAAGTACTTGCGTCCCTCAGTGGCTACCAAAGCATTGTCGA
TACTTCCGCACTCCTTCTGAGCCAGCTGGAGTGTACGACATTTGGATTCA
TTTTCAGAGCCATGGAAAGATCGTCGCGGTCATTGCCATGGCTGTTATAG
CCTGTGGACCGGGGGATACAAAGCGAGCAACTTCGGATGGAAGACTTCAC
GTCAAGATATTGCAAACAAAAGAAATAGCTTCCAAAATTGCCGACACGAG
AGCTTACGGTGTAGAGCGAGTGATTGATCTTTGGGACTGCAGAGTGCCGA
TCTTGCTTAGAGATGTGTTAAGGATGCTGGACGGACAGGCCCTTAGCTTG
ACAGGGGTGAGGCGATTTCTGAAGCACAGCGAGGTAGAATGCCCTGAGCT
TACCAGTTTCTTTGTTTCAGAGAAATTTGAGTCTAAGCTGAGTGATAACG
CGCATGCAGTTGTCGTGGGTACAGCCGAAGACGTGGAAGACACTTCAGAT
ATCGCGACAATTGCTTCCGATGACGTCGAACAGGAGGACGAAGATGAGAA
TGACAATGGAAATAGGAGAATGTCCCCTGACACGTTAGGTATATGGTTCA
AGTACTTCTATAGGATGAGAATGATTGGAGACGCTGGACCATACTCTGAC
AATGAGGAAGAGCAGAAAGGAGAGTCTTCATCAAACGCAGGAGCAGCTGG
ACTAGAACGCGAACAACAGTCAACTGATGGGAACAACAACAGAACCGAAA
GTACAACATATCGATTTCACATCGAG