Gcaud1213.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1213.t1
Unique NameGcaud1213.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1358_length_11186_cov_4.670302contigNODE_1358_length_11186_cov_4.670302:4808..5279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1213Gcaud1213Gracilaria caudata M_176_S67 malegeneNODE_1358_length_11186_cov_4.670302 4808..5279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1213.t1Gcaud1213.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1358_length_11186_cov_4.670302 4808..5279 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1213.t1.start1Gcaud1213.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1358_length_11186_cov_4.670302 4808..4810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1213.t1.CDS1Gcaud1213.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1358_length_11186_cov_4.670302 4808..5024 +
Gcaud1213.t1.CDS2Gcaud1213.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1358_length_11186_cov_4.670302 5143..5279 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1213.t1.exon1Gcaud1213.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1358_length_11186_cov_4.670302 4808..5024 +
Gcaud1213.t1.exon2Gcaud1213.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1358_length_11186_cov_4.670302 5143..5279 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1213.t1.intron1Gcaud1213.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1358_length_11186_cov_4.670302 5025..5142 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1213.t1.stop1Gcaud1213.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1358_length_11186_cov_4.670302 5277..5279 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1213.t1 ID=Gcaud1213.t1|Name=Gcaud1213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=118bp
MGDGRSTVEEDAVSVARQFREQFGSKGRINTIAVGFSSTQALEAIDTASD
GSVFEVDQFIDVLDVIAERVFTSRIPRKGDRLASIRCLTETNSFTEMPEK
SVPPPDVLEPESVGVHM*
back to top

spliced messenger RNA

>Gcaud1213.t1 ID=Gcaud1213.t1|Name=Gcaud1213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=354bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:4808..5279+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGACGGTCGAAGTACAGTTGAAGAGGATGCAGTAAGCGTGGCGCG
GCAGTTCAGGGAGCAGTTTGGATCCAAAGGAAGAATTAACACCATTGCTG
TGGGCTTTTCGAGTACGCAAGCGCTTGAAGCGATTGACACAGCTAGTGAT
GGTTCTGTTTTCGAAGTTGACCAATTCATTGACGTGTTGGATGTCATAGC
TGAGCGCGTATTCACTTCACGTATTCCCCGCAAGGGCGACCGTCTCGCCT
CAATTCGGTGCCTCACTGAAACAAACTCCTTCACAGAAATGCCTGAAAAG
AGCGTTCCACCACCCGATGTGTTGGAGCCTGAGTCCGTGGGAGTGCATAT
GTGA
back to top

protein sequence of Gcaud1213.t1

>Gcaud1213.t1 ID=Gcaud1213.t1|Name=Gcaud1213.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=118bp
MGDGRSTVEEDAVSVARQFREQFGSKGRINTIAVGFSSTQALEAIDTASD
GSVFEVDQFIDVLDVIAERVFTSRIPRKGDRLASIRCLTETNSFTEMPEK
SVPPPDVLEPESVGVHM*
back to top

mRNA from alignment at NODE_1358_length_11186_cov_4.670302:4808..5279+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1213.t1 ID=Gcaud1213.t1|Name=Gcaud1213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=472bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:4808..5279+ (Gracilaria caudata M_176_S67 male)
ATGGGTGACGGTCGAAGTACAGTTGAAGAGGATGCAGTAAGCGTGGCGCG
GCAGTTCAGGGAGCAGTTTGGATCCAAAGGAAGAATTAACACCATTGCTG
TGGGCTTTTCGAGTACGCAAGCGCTTGAAGCGATTGACACAGCTAGTGAT
GGTTCTGTTTTCGAAGTTGACCAATTCATTGACGTGTTGGATGTCATAGC
TGAGCGCGTATTCACTTGTGAGTCTAGCAGCAACTGAACAGCGTATATCA
TACAACAGCGGTAGTTTGGTAATGATGTTGAAAATAAGTTATTTTCTCTA
ACCCTCTACTTGTGTACTTCTGTGATCGAATGCAGCACGTATTCCCCGCA
AGGGCGACCGTCTCGCCTCAATTCGGTGCCTCACTGAAACAAACTCCTTC
ACAGAAATGCCTGAAAAGAGCGTTCCACCACCCGATGTGTTGGAGCCTGA
GTCCGTGGGAGTGCATATGTGA
back to top

Coding sequence (CDS) from alignment at NODE_1358_length_11186_cov_4.670302:4808..5279+

>Gcaud1213.t1 ID=Gcaud1213.t1|Name=Gcaud1213.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=354bp|location=Sequence derived from alignment at NODE_1358_length_11186_cov_4.670302:4808..5279+ (Gracilaria caudata M_176_S67 male)
ATGGGTGACGGTCGAAGTACAGTTGAAGAGGATGCAGTAAGCGTGGCGCG
GCAGTTCAGGGAGCAGTTTGGATCCAAAGGAAGAATTAACACCATTGCTG
TGGGCTTTTCGAGTACGCAAGCGCTTGAAGCGATTGACACAGCTAGTGAT
GGTTCTGTTTTCGAAGTTGACCAATTCATTGACGTGTTGGATGTCATAGC
TGAGCGCGTATTCACTTCACGTATTCCCCGCAAGGGCGACCGTCTCGCCT
CAATTCGGTGCCTCACTGAAACAAACTCCTTCACAGAAATGCCTGAAAAG
AGCGTTCCACCACCCGATGTGTTGGAGCCTGAGTCCGTGGGAGTGCATAT
GTGA
back to top