Gcaud3457.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3457.t1
Unique NameGcaud3457.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length90
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_133_length_45383_cov_4.895280contigNODE_133_length_45383_cov_4.895280:5684..6021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002501864.1
PFAMsPet100
Max annot lvl33090|Viridiplantae
KEGG koko:K18187
Evalue2.35e-06
EggNOG OGs2CYCQ@1|root,2S3KV@2759|Eukaryota,37W49@33090|Viridiplantae
DescriptionPet100
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3457Gcaud3457Gracilaria caudata M_176_S67 malegeneNODE_133_length_45383_cov_4.895280 5684..6021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3457.t1Gcaud3457.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_133_length_45383_cov_4.895280 5684..6021 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3457.t1.stop1Gcaud3457.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_133_length_45383_cov_4.895280 5684..5686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3457.t1.CDS1Gcaud3457.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_133_length_45383_cov_4.895280 5684..5821 -
Gcaud3457.t1.CDS2Gcaud3457.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_133_length_45383_cov_4.895280 5890..6021 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3457.t1.exon1Gcaud3457.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_133_length_45383_cov_4.895280 5684..5821 -
Gcaud3457.t1.exon2Gcaud3457.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_133_length_45383_cov_4.895280 5890..6021 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3457.t1.intron1Gcaud3457.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_133_length_45383_cov_4.895280 5822..5889 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3457.t1.start1Gcaud3457.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_133_length_45383_cov_4.895280 6019..6021 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3457.t1 ID=Gcaud3457.t1|Name=Gcaud3457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=90bp
MASGHAGRQWLEALKFSVYIVTPIAATVYLGTGAYPYLERIIHNTSYIVY
PPEGEAPPTSTKEIKRAREERIWKRQPHSIDSQMSEKVE*
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spliced messenger RNA

>Gcaud3457.t1 ID=Gcaud3457.t1|Name=Gcaud3457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=270bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:5684..6021- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCGGACATGCCGGGCGGCAATGGCTCGAAGCCTTGAAGTTCAG
CGTTTATATCGTTACGCCCATTGCCGCCACTGTTTATCTTGGGACTGGTG
CGTACCCATATTTGGAGAGGATCATTCACAATACTTCGTATATTGTCTAT
CCACCTGAAGGAGAGGCGCCTCCAACATCAACTAAGGAGATAAAGCGTGC
CAGAGAGGAAAGAATATGGAAGCGTCAACCACACTCAATCGACTCGCAGA
TGTCTGAAAAGGTAGAATAA
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protein sequence of Gcaud3457.t1

>Gcaud3457.t1 ID=Gcaud3457.t1|Name=Gcaud3457.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=90bp
MASGHAGRQWLEALKFSVYIVTPIAATVYLGTGAYPYLERIIHNTSYIVY
PPEGEAPPTSTKEIKRAREERIWKRQPHSIDSQMSEKVE*
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mRNA from alignment at NODE_133_length_45383_cov_4.895280:5684..6021-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3457.t1 ID=Gcaud3457.t1|Name=Gcaud3457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=338bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:5684..6021- (Gracilaria caudata M_176_S67 male)
ATGGCCAGCGGACATGCCGGGCGGCAATGGCTCGAAGCCTTGAAGTTCAG
CGTTTATATCGTTACGCCCATTGCCGCCACTGTTTATCTTGGGACTGGTG
CGTACCCATATTTGGAGAGGATCATTCACAATGTAAGTTACGATTCGAAC
GCTTTGCTGTGGCGCGTCCTGAGAGTGCTGACAATTCTCTCTTCTGCAAG
ACTTCGTATATTGTCTATCCACCTGAAGGAGAGGCGCCTCCAACATCAAC
TAAGGAGATAAAGCGTGCCAGAGAGGAAAGAATATGGAAGCGTCAACCAC
ACTCAATCGACTCGCAGATGTCTGAAAAGGTAGAATAA
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Coding sequence (CDS) from alignment at NODE_133_length_45383_cov_4.895280:5684..6021-

>Gcaud3457.t1 ID=Gcaud3457.t1|Name=Gcaud3457.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=270bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:5684..6021- (Gracilaria caudata M_176_S67 male)
ATGGCCAGCGGACATGCCGGGCGGCAATGGCTCGAAGCCTTGAAGTTCAG
CGTTTATATCGTTACGCCCATTGCCGCCACTGTTTATCTTGGGACTGGTG
CGTACCCATATTTGGAGAGGATCATTCACAATACTTCGTATATTGTCTAT
CCACCTGAAGGAGAGGCGCCTCCAACATCAACTAAGGAGATAAAGCGTGC
CAGAGAGGAAAGAATATGGAAGCGTCAACCACACTCAATCGACTCGCAGA
TGTCTGAAAAGGTAGAATAA
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