Gcaud1332.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1332.t1
Unique NameGcaud1332.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1334_length_11334_cov_4.317709contigNODE_1334_length_11334_cov_4.317709:101..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog158500.BV97_04547
Max annot lvl204457|Sphingomonadales
Evalue2.93e-07
EggNOG OGs28PWG@1|root,2ZCGU@2|Bacteria,1RJCD@1224|Proteobacteria,2UARK@28211|Alphaproteobacteria,2K5NQ@204457|Sphingomonadales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1332Gcaud1332Gracilaria caudata M_176_S67 malegeneNODE_1334_length_11334_cov_4.317709 101..499 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1332.t1.stop1Gcaud1332.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1334_length_11334_cov_4.317709 101..103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1332.t1.CDS1Gcaud1332.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1334_length_11334_cov_4.317709 101..499 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1332.t1.exon1Gcaud1332.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1334_length_11334_cov_4.317709 101..499 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1332.t1.start1Gcaud1332.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1334_length_11334_cov_4.317709 497..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1332.t1Gcaud1332.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1334_length_11334_cov_4.317709 101..499 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1332.t1 ID=Gcaud1332.t1|Name=Gcaud1332.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=133bp
MDPHTWKQIDKHRSIIEVGLRGSAYSQRNTYTWEDGRKQVKVFGGRAIDG
VLEIENKALKGRAHGIGGNDLLFIAELKGTAISMYEVIRMLGDDKRARVW
QMSDGEKITAVVHIDEERVSKDDVFFDVGDAY*
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spliced messenger RNA

>Gcaud1332.t1 ID=Gcaud1332.t1|Name=Gcaud1332.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=399bp|location=Sequence derived from alignment at NODE_1334_length_11334_cov_4.317709:101..499- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCTCACACATGGAAGCAAATTGACAAACACCGTAGTATTATCGA
AGTCGGACTTCGGGGGAGTGCCTATTCGCAGCGCAATACGTATACATGGG
AAGATGGACGCAAACAAGTCAAAGTGTTTGGGGGCCGAGCGATAGATGGT
GTTCTGGAGATTGAGAACAAAGCGCTGAAGGGACGTGCACACGGTATTGG
CGGAAACGATTTGCTGTTCATTGCAGAACTTAAGGGAACTGCGATTTCAA
TGTATGAGGTGATTCGGATGCTGGGTGATGATAAACGAGCGAGGGTGTGG
CAAATGAGCGATGGTGAGAAGATAACTGCGGTTGTACATATTGATGAGGA
GAGGGTTTCCAAAGATGACGTTTTCTTTGATGTTGGTGATGCGTACTGA
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protein sequence of Gcaud1332.t1

>Gcaud1332.t1 ID=Gcaud1332.t1|Name=Gcaud1332.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=133bp
MDPHTWKQIDKHRSIIEVGLRGSAYSQRNTYTWEDGRKQVKVFGGRAIDG
VLEIENKALKGRAHGIGGNDLLFIAELKGTAISMYEVIRMLGDDKRARVW
QMSDGEKITAVVHIDEERVSKDDVFFDVGDAY*
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mRNA from alignment at NODE_1334_length_11334_cov_4.317709:101..499-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1332.t1 ID=Gcaud1332.t1|Name=Gcaud1332.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=399bp|location=Sequence derived from alignment at NODE_1334_length_11334_cov_4.317709:101..499- (Gracilaria caudata M_176_S67 male)
ATGGACCCTCACACATGGAAGCAAATTGACAAACACCGTAGTATTATCGA
AGTCGGACTTCGGGGGAGTGCCTATTCGCAGCGCAATACGTATACATGGG
AAGATGGACGCAAACAAGTCAAAGTGTTTGGGGGCCGAGCGATAGATGGT
GTTCTGGAGATTGAGAACAAAGCGCTGAAGGGACGTGCACACGGTATTGG
CGGAAACGATTTGCTGTTCATTGCAGAACTTAAGGGAACTGCGATTTCAA
TGTATGAGGTGATTCGGATGCTGGGTGATGATAAACGAGCGAGGGTGTGG
CAAATGAGCGATGGTGAGAAGATAACTGCGGTTGTACATATTGATGAGGA
GAGGGTTTCCAAAGATGACGTTTTCTTTGATGTTGGTGATGCGTACTGA
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Coding sequence (CDS) from alignment at NODE_1334_length_11334_cov_4.317709:101..499-

>Gcaud1332.t1 ID=Gcaud1332.t1|Name=Gcaud1332.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=399bp|location=Sequence derived from alignment at NODE_1334_length_11334_cov_4.317709:101..499- (Gracilaria caudata M_176_S67 male)
ATGGACCCTCACACATGGAAGCAAATTGACAAACACCGTAGTATTATCGA
AGTCGGACTTCGGGGGAGTGCCTATTCGCAGCGCAATACGTATACATGGG
AAGATGGACGCAAACAAGTCAAAGTGTTTGGGGGCCGAGCGATAGATGGT
GTTCTGGAGATTGAGAACAAAGCGCTGAAGGGACGTGCACACGGTATTGG
CGGAAACGATTTGCTGTTCATTGCAGAACTTAAGGGAACTGCGATTTCAA
TGTATGAGGTGATTCGGATGCTGGGTGATGATAAACGAGCGAGGGTGTGG
CAAATGAGCGATGGTGAGAAGATAACTGCGGTTGTACATATTGATGAGGA
GAGGGTTTCCAAAGATGACGTTTTCTTTGATGTTGGTGATGCGTACTGA
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