Gcaud7480.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7480.t2
Unique NameGcaud7480.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1333_length_11336_cov_4.600178contigNODE_1333_length_11336_cov_4.600178:8682..9614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7260.FBpp0247035
Preferred nameORC3
PFAMsORC3_N
Max annot lvl33208|Metazoa
KEGG koko:K02605
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000781,GO:0000784,GO:0000808,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005664,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006270,GO:0006725,GO:0006807,GO:0006928,GO:0007049,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007610,GO:0007611,GO:0007612,GO:0007631,GO:0007635,GO:0008150,GO:0008152,GO:0008283,GO:0008306,GO:0008355,GO:0009058,GO:0009059,GO:0009888,GO:0009987,GO:0010631,GO:0016043,GO:0016477,GO:0016604,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030536,GO:0030537,GO:0030707,GO:0030855,GO:0031261,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0032993,GO:0033260,GO:0034622,GO:0034641,GO:0034645,GO:0036387,GO:0036388,GO:0040011,GO:0042048,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051674,GO:0051704,GO:0060429,GO:0061351,GO:0065003,GO:0065004,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090130,GO:0090132,GO:0090304,GO:0097159,GO:0098687,GO:1901360,GO:1901363,GO:1901576,GO:1902299,GO:1903047,GO:1990837
Evalue9.64e-17
EggNOG OGsKOG2538@1|root,KOG2538@2759|Eukaryota,38GJJ@33154|Opisthokonta,3BDXG@33208|Metazoa,3CWXM@33213|Bilateria,41V1B@6656|Arthropoda,3SIN1@50557|Insecta,451KQ@7147|Diptera,45WX8@7214|Drosophilidae
DescriptionDNA binding. It is involved in the biological process described with DNA replication
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7480Gcaud7480Gracilaria caudata M_176_S67 malegeneNODE_1333_length_11336_cov_4.600178 7599..9614 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7480.t2.start1Gcaud7480.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1333_length_11336_cov_4.600178 8682..8684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7480.t2.CDS1Gcaud7480.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1333_length_11336_cov_4.600178 8682..9614 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7480.t2.exon1Gcaud7480.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_1333_length_11336_cov_4.600178 8682..9614 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7480.t2.stop1Gcaud7480.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1333_length_11336_cov_4.600178 9612..9614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7480.t2Gcaud7480.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_1333_length_11336_cov_4.600178 8682..9614 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7480.t2 ID=Gcaud7480.t2|Name=Gcaud7480.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=311bp
MYDIKPHSESSGEIHNMETMDDLSVNVFRAFLVEHDTGEIKFDRFFSPLF
VMMRKAGKPMIRSTLTTIIQEISRSLEVTHDDEMRSLSGEAENLLKELNS
ISDVQNNPPQRKWPHGATTARYAKGGGAARNLRQQMIAAVANEVQSSDPL
VPFRKKLESIILRMSKLIKSLKDSPLCEIVLVSDIAELRSFSGGMGGPVE
PRSSMFTAMRQPHKILGSISPCSHPDTAVAYRILAEGGRLVGLYDWYNSF
ASVIVAAATKQDNSGNVKIAQVRPAELQSRFARACSELEVLGVMKYTNRK
ADHVARLVFE*
back to top

spliced messenger RNA

>Gcaud7480.t2 ID=Gcaud7480.t2|Name=Gcaud7480.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_1333_length_11336_cov_4.600178:8682..9614+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGATATCAAACCACATTCGGAAAGTTCGGGTGAAATTCATAACAT
GGAAACAATGGACGACCTGAGCGTCAATGTGTTCAGAGCGTTCCTTGTAG
AACACGATACTGGTGAGATCAAATTCGATCGCTTTTTCAGTCCTTTGTTC
GTAATGATGCGAAAGGCAGGCAAACCAATGATTCGAAGCACACTAACAAC
AATTATACAAGAGATATCTCGTTCTTTGGAAGTCACCCATGACGATGAGA
TGAGGTCGCTGAGTGGAGAAGCAGAGAACCTTCTGAAAGAGTTGAACAGT
ATTTCTGACGTGCAAAACAACCCCCCGCAAAGAAAATGGCCGCATGGGGC
CACTACAGCTAGGTATGCGAAAGGGGGTGGCGCCGCCAGAAATCTTAGGC
AGCAGATGATTGCGGCCGTGGCCAATGAAGTACAAAGCTCCGATCCCTTG
GTACCATTTCGAAAGAAGTTGGAGTCTATCATTCTGCGCATGTCCAAACT
GATCAAGTCATTGAAAGATAGTCCACTTTGTGAAATAGTACTGGTGTCAG
ATATTGCCGAATTGCGGTCCTTTTCCGGAGGAATGGGAGGTCCAGTTGAG
CCAAGGTCTTCAATGTTCACGGCGATGCGACAACCACACAAGATACTGGG
ATCCATTTCGCCTTGTTCCCATCCCGACACAGCAGTTGCATACAGAATTC
TAGCCGAAGGTGGGCGATTAGTCGGTCTGTACGATTGGTACAACAGCTTT
GCCTCCGTCATAGTTGCGGCAGCAACGAAACAGGATAATAGCGGGAACGT
TAAGATCGCGCAGGTCCGTCCAGCCGAGCTTCAATCTCGTTTTGCAAGAG
CATGTTCTGAATTGGAGGTTTTAGGTGTGATGAAATACACAAACCGCAAA
GCAGATCATGTTGCCAGACTCGTTTTCGAGTAA
back to top

protein sequence of Gcaud7480.t2

>Gcaud7480.t2 ID=Gcaud7480.t2|Name=Gcaud7480.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=311bp
MYDIKPHSESSGEIHNMETMDDLSVNVFRAFLVEHDTGEIKFDRFFSPLF
VMMRKAGKPMIRSTLTTIIQEISRSLEVTHDDEMRSLSGEAENLLKELNS
ISDVQNNPPQRKWPHGATTARYAKGGGAARNLRQQMIAAVANEVQSSDPL
VPFRKKLESIILRMSKLIKSLKDSPLCEIVLVSDIAELRSFSGGMGGPVE
PRSSMFTAMRQPHKILGSISPCSHPDTAVAYRILAEGGRLVGLYDWYNSF
ASVIVAAATKQDNSGNVKIAQVRPAELQSRFARACSELEVLGVMKYTNRK
ADHVARLVFE*
back to top

mRNA from alignment at NODE_1333_length_11336_cov_4.600178:8682..9614+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7480.t2 ID=Gcaud7480.t2|Name=Gcaud7480.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_1333_length_11336_cov_4.600178:8682..9614+ (Gracilaria caudata M_176_S67 male)
ATGTATGATATCAAACCACATTCGGAAAGTTCGGGTGAAATTCATAACAT
GGAAACAATGGACGACCTGAGCGTCAATGTGTTCAGAGCGTTCCTTGTAG
AACACGATACTGGTGAGATCAAATTCGATCGCTTTTTCAGTCCTTTGTTC
GTAATGATGCGAAAGGCAGGCAAACCAATGATTCGAAGCACACTAACAAC
AATTATACAAGAGATATCTCGTTCTTTGGAAGTCACCCATGACGATGAGA
TGAGGTCGCTGAGTGGAGAAGCAGAGAACCTTCTGAAAGAGTTGAACAGT
ATTTCTGACGTGCAAAACAACCCCCCGCAAAGAAAATGGCCGCATGGGGC
CACTACAGCTAGGTATGCGAAAGGGGGTGGCGCCGCCAGAAATCTTAGGC
AGCAGATGATTGCGGCCGTGGCCAATGAAGTACAAAGCTCCGATCCCTTG
GTACCATTTCGAAAGAAGTTGGAGTCTATCATTCTGCGCATGTCCAAACT
GATCAAGTCATTGAAAGATAGTCCACTTTGTGAAATAGTACTGGTGTCAG
ATATTGCCGAATTGCGGTCCTTTTCCGGAGGAATGGGAGGTCCAGTTGAG
CCAAGGTCTTCAATGTTCACGGCGATGCGACAACCACACAAGATACTGGG
ATCCATTTCGCCTTGTTCCCATCCCGACACAGCAGTTGCATACAGAATTC
TAGCCGAAGGTGGGCGATTAGTCGGTCTGTACGATTGGTACAACAGCTTT
GCCTCCGTCATAGTTGCGGCAGCAACGAAACAGGATAATAGCGGGAACGT
TAAGATCGCGCAGGTCCGTCCAGCCGAGCTTCAATCTCGTTTTGCAAGAG
CATGTTCTGAATTGGAGGTTTTAGGTGTGATGAAATACACAAACCGCAAA
GCAGATCATGTTGCCAGACTCGTTTTCGAGTAA
back to top

Coding sequence (CDS) from alignment at NODE_1333_length_11336_cov_4.600178:8682..9614+

>Gcaud7480.t2 ID=Gcaud7480.t2|Name=Gcaud7480.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=933bp|location=Sequence derived from alignment at NODE_1333_length_11336_cov_4.600178:8682..9614+ (Gracilaria caudata M_176_S67 male)
ATGTATGATATCAAACCACATTCGGAAAGTTCGGGTGAAATTCATAACAT
GGAAACAATGGACGACCTGAGCGTCAATGTGTTCAGAGCGTTCCTTGTAG
AACACGATACTGGTGAGATCAAATTCGATCGCTTTTTCAGTCCTTTGTTC
GTAATGATGCGAAAGGCAGGCAAACCAATGATTCGAAGCACACTAACAAC
AATTATACAAGAGATATCTCGTTCTTTGGAAGTCACCCATGACGATGAGA
TGAGGTCGCTGAGTGGAGAAGCAGAGAACCTTCTGAAAGAGTTGAACAGT
ATTTCTGACGTGCAAAACAACCCCCCGCAAAGAAAATGGCCGCATGGGGC
CACTACAGCTAGGTATGCGAAAGGGGGTGGCGCCGCCAGAAATCTTAGGC
AGCAGATGATTGCGGCCGTGGCCAATGAAGTACAAAGCTCCGATCCCTTG
GTACCATTTCGAAAGAAGTTGGAGTCTATCATTCTGCGCATGTCCAAACT
GATCAAGTCATTGAAAGATAGTCCACTTTGTGAAATAGTACTGGTGTCAG
ATATTGCCGAATTGCGGTCCTTTTCCGGAGGAATGGGAGGTCCAGTTGAG
CCAAGGTCTTCAATGTTCACGGCGATGCGACAACCACACAAGATACTGGG
ATCCATTTCGCCTTGTTCCCATCCCGACACAGCAGTTGCATACAGAATTC
TAGCCGAAGGTGGGCGATTAGTCGGTCTGTACGATTGGTACAACAGCTTT
GCCTCCGTCATAGTTGCGGCAGCAACGAAACAGGATAATAGCGGGAACGT
TAAGATCGCGCAGGTCCGTCCAGCCGAGCTTCAATCTCGTTTTGCAAGAG
CATGTTCTGAATTGGAGGTTTTAGGTGTGATGAAATACACAAACCGCAAA
GCAGATCATGTTGCCAGACTCGTTTTCGAGTAA
back to top