Gcaud2500.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2500.t1
Unique NameGcaud2500.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1317_length_11484_cov_3.708769contigNODE_1317_length_11484_cov_3.708769:8857..9792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1461693.ATO10_06536
Preferred nameubiE
PFAMsUbie_methyltran
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00003,RC01253,RC01662
KEGG koko:K03183
KEGG ReactionR04990,R04993,R06859,R08774,R09736
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00116,M00117
Evalue1.77e-80
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1MX8I@1224|Proteobacteria,2TRWR@28211|Alphaproteobacteria
EC2.1.1.163,2.1.1.201
DescriptionMethyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2500Gcaud2500Gracilaria caudata M_176_S67 malegeneNODE_1317_length_11484_cov_3.708769 8857..9792 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2500.t1.stop1Gcaud2500.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1317_length_11484_cov_3.708769 8857..8859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2500.t1.CDS1Gcaud2500.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1317_length_11484_cov_3.708769 8857..9792 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2500.t1.exon1Gcaud2500.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1317_length_11484_cov_3.708769 8857..9792 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2500.t1.start1Gcaud2500.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1317_length_11484_cov_3.708769 9790..9792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2500.t1Gcaud2500.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1317_length_11484_cov_3.708769 8857..9792 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2500.t1 ID=Gcaud2500.t1|Name=Gcaud2500.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp
MCSRSLILIKLELATKRIPARSHPSSELGAVPIVAPKMMRRSSVALLRLT
RRGSSRSFAAGTATKKDEDDSTTHFGFSTIPTDDKQRRVSSVFSSVARNY
DLMNDLMSLGMHRVWKQEFVSQLAPTEHMSILDCAAGTGDIARLIRERAP
GASVTLADPNEDMLKQAAKRGPPGLDIVTADAQKLPFSDASFDAYTISFG
MRNVPRPKLALEEAFRVLKPRGRFLMLEFAAVSDPLLGRLYDTYSFNVIP
RIGQLVARDSDSYQYLVESIRAFPAQDEFSQMMKDCGFRHVTVTNYTCGI
AACYSAFKPAN*
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spliced messenger RNA

>Gcaud2500.t1 ID=Gcaud2500.t1|Name=Gcaud2500.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:8857..9792- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCCAGATCATTGATCCTTATCAAGCTGGAGCTCGCGACGAAGCG
AATCCCCGCTCGGAGCCATCCAAGTTCAGAGTTGGGAGCGGTTCCCATCG
TCGCTCCGAAGATGATGCGACGATCGTCTGTTGCTCTGCTTCGCCTCACG
AGGCGCGGCTCAAGTCGCAGTTTCGCCGCCGGAACAGCCACCAAGAAAGA
TGAAGATGACTCCACCACGCATTTCGGTTTCTCCACCATCCCAACCGACG
ATAAGCAACGTCGTGTCTCCTCCGTATTCAGTTCCGTCGCGCGCAACTAC
GATCTCATGAACGATCTCATGTCGCTCGGTATGCACCGCGTCTGGAAACA
AGAATTCGTCTCTCAGCTCGCACCCACCGAACACATGTCAATCCTGGATT
GCGCCGCGGGCACCGGCGATATTGCTCGTCTGATTCGAGAAAGGGCGCCC
GGAGCATCGGTAACGCTTGCTGATCCGAACGAAGACATGCTCAAACAGGC
TGCCAAACGCGGGCCTCCTGGGCTTGATATCGTCACTGCGGACGCGCAGA
AGCTGCCGTTCTCAGACGCGTCGTTTGATGCGTATACCATTTCGTTTGGC
ATGCGCAACGTGCCTCGTCCAAAGCTTGCTCTTGAGGAAGCTTTTCGCGT
TCTCAAGCCGCGCGGACGATTCCTGATGCTGGAATTCGCCGCTGTGAGTG
ATCCTTTATTAGGGCGGTTGTACGACACGTATTCGTTCAATGTTATCCCG
CGCATTGGGCAATTGGTGGCTCGGGACAGCGACTCTTATCAATACCTTGT
GGAATCCATTAGGGCGTTTCCAGCGCAGGATGAATTTTCTCAGATGATGA
AGGACTGCGGCTTTCGTCATGTTACTGTAACTAACTACACGTGCGGTATT
GCCGCGTGCTACTCTGCTTTCAAGCCAGCAAACTAG
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protein sequence of Gcaud2500.t1

>Gcaud2500.t1 ID=Gcaud2500.t1|Name=Gcaud2500.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=312bp
MCSRSLILIKLELATKRIPARSHPSSELGAVPIVAPKMMRRSSVALLRLT
RRGSSRSFAAGTATKKDEDDSTTHFGFSTIPTDDKQRRVSSVFSSVARNY
DLMNDLMSLGMHRVWKQEFVSQLAPTEHMSILDCAAGTGDIARLIRERAP
GASVTLADPNEDMLKQAAKRGPPGLDIVTADAQKLPFSDASFDAYTISFG
MRNVPRPKLALEEAFRVLKPRGRFLMLEFAAVSDPLLGRLYDTYSFNVIP
RIGQLVARDSDSYQYLVESIRAFPAQDEFSQMMKDCGFRHVTVTNYTCGI
AACYSAFKPAN*
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mRNA from alignment at NODE_1317_length_11484_cov_3.708769:8857..9792-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2500.t1 ID=Gcaud2500.t1|Name=Gcaud2500.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:8857..9792- (Gracilaria caudata M_176_S67 male)
ATGTGCTCCAGATCATTGATCCTTATCAAGCTGGAGCTCGCGACGAAGCG
AATCCCCGCTCGGAGCCATCCAAGTTCAGAGTTGGGAGCGGTTCCCATCG
TCGCTCCGAAGATGATGCGACGATCGTCTGTTGCTCTGCTTCGCCTCACG
AGGCGCGGCTCAAGTCGCAGTTTCGCCGCCGGAACAGCCACCAAGAAAGA
TGAAGATGACTCCACCACGCATTTCGGTTTCTCCACCATCCCAACCGACG
ATAAGCAACGTCGTGTCTCCTCCGTATTCAGTTCCGTCGCGCGCAACTAC
GATCTCATGAACGATCTCATGTCGCTCGGTATGCACCGCGTCTGGAAACA
AGAATTCGTCTCTCAGCTCGCACCCACCGAACACATGTCAATCCTGGATT
GCGCCGCGGGCACCGGCGATATTGCTCGTCTGATTCGAGAAAGGGCGCCC
GGAGCATCGGTAACGCTTGCTGATCCGAACGAAGACATGCTCAAACAGGC
TGCCAAACGCGGGCCTCCTGGGCTTGATATCGTCACTGCGGACGCGCAGA
AGCTGCCGTTCTCAGACGCGTCGTTTGATGCGTATACCATTTCGTTTGGC
ATGCGCAACGTGCCTCGTCCAAAGCTTGCTCTTGAGGAAGCTTTTCGCGT
TCTCAAGCCGCGCGGACGATTCCTGATGCTGGAATTCGCCGCTGTGAGTG
ATCCTTTATTAGGGCGGTTGTACGACACGTATTCGTTCAATGTTATCCCG
CGCATTGGGCAATTGGTGGCTCGGGACAGCGACTCTTATCAATACCTTGT
GGAATCCATTAGGGCGTTTCCAGCGCAGGATGAATTTTCTCAGATGATGA
AGGACTGCGGCTTTCGTCATGTTACTGTAACTAACTACACGTGCGGTATT
GCCGCGTGCTACTCTGCTTTCAAGCCAGCAAACTAG
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Coding sequence (CDS) from alignment at NODE_1317_length_11484_cov_3.708769:8857..9792-

>Gcaud2500.t1 ID=Gcaud2500.t1|Name=Gcaud2500.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=936bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:8857..9792- (Gracilaria caudata M_176_S67 male)
ATGTGCTCCAGATCATTGATCCTTATCAAGCTGGAGCTCGCGACGAAGCG
AATCCCCGCTCGGAGCCATCCAAGTTCAGAGTTGGGAGCGGTTCCCATCG
TCGCTCCGAAGATGATGCGACGATCGTCTGTTGCTCTGCTTCGCCTCACG
AGGCGCGGCTCAAGTCGCAGTTTCGCCGCCGGAACAGCCACCAAGAAAGA
TGAAGATGACTCCACCACGCATTTCGGTTTCTCCACCATCCCAACCGACG
ATAAGCAACGTCGTGTCTCCTCCGTATTCAGTTCCGTCGCGCGCAACTAC
GATCTCATGAACGATCTCATGTCGCTCGGTATGCACCGCGTCTGGAAACA
AGAATTCGTCTCTCAGCTCGCACCCACCGAACACATGTCAATCCTGGATT
GCGCCGCGGGCACCGGCGATATTGCTCGTCTGATTCGAGAAAGGGCGCCC
GGAGCATCGGTAACGCTTGCTGATCCGAACGAAGACATGCTCAAACAGGC
TGCCAAACGCGGGCCTCCTGGGCTTGATATCGTCACTGCGGACGCGCAGA
AGCTGCCGTTCTCAGACGCGTCGTTTGATGCGTATACCATTTCGTTTGGC
ATGCGCAACGTGCCTCGTCCAAAGCTTGCTCTTGAGGAAGCTTTTCGCGT
TCTCAAGCCGCGCGGACGATTCCTGATGCTGGAATTCGCCGCTGTGAGTG
ATCCTTTATTAGGGCGGTTGTACGACACGTATTCGTTCAATGTTATCCCG
CGCATTGGGCAATTGGTGGCTCGGGACAGCGACTCTTATCAATACCTTGT
GGAATCCATTAGGGCGTTTCCAGCGCAGGATGAATTTTCTCAGATGATGA
AGGACTGCGGCTTTCGTCATGTTACTGTAACTAACTACACGTGCGGTATT
GCCGCGTGCTACTCTGCTTTCAAGCCAGCAAACTAG
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