Gcaud236.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud236.t1
Unique Name	Gcaud236.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1316_length_11484_cov_5.657158	contig	NODE_1316_length_11484_cov_5.657158:5537..7246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud236	Gcaud236	Gracilaria caudata M_176_S67 male	gene	NODE_1316_length_11484_cov_5.657158 5537..7246 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud236.t1	Gcaud236.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1316_length_11484_cov_5.657158 5537..7246 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud236.t1.start1	Gcaud236.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1316_length_11484_cov_5.657158 5537..5539 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud236.t1.CDS1	Gcaud236.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1316_length_11484_cov_5.657158 5537..6347 +
Gcaud236.t1.CDS2	Gcaud236.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1316_length_11484_cov_5.657158 6663..7246 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud236.t1.exon1	Gcaud236.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1316_length_11484_cov_5.657158 5537..6347 +
Gcaud236.t1.exon2	Gcaud236.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1316_length_11484_cov_5.657158 6663..7246 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud236.t1.intron1	Gcaud236.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1316_length_11484_cov_5.657158 6348..6662 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud236.t1.stop1	Gcaud236.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1316_length_11484_cov_5.657158 7244..7246 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1316_length_11484_cov_5.657158:5537..7246+
coding sequence from alignment at NODE_1316_length_11484_cov_5.657158:5537..7246+

mRNA sequence

>Gcaud236.t1 ID=Gcaud236.t1|Name=Gcaud236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp
MSSNQGESEKDATVRQTILANLEAPRLQGVATKHFTAFQKRRDLYEKQLA
EKNREPGVNVTPTSFKASIDDTLLDIFITAGWIDAASVEEITEEQLQNCV
RERANFEPEGDDLSRIRYLIRKVKMDDSIKDPEQRVWTLHYKYVTTLHSH
GLRDLPKTKPHIAIKHILKVIKPKRLRERMQDIVEWKKDEHFEKKDFGAF
MRELARQAKKLEEKRGPDRISESEDESEHDDSSRSTEKESRKFERSKNSK
DKRSGKKRGRNDQGGRDSKGEIFDQILLAKPALQLQKLDPPHLYNGIAKN
GEPITCTDEISLDIQLRIRHGTRLALRSMLWKVGEAAIDQVIIGREVLQS
IGCDNRAILAAACDKNDGVINIPTAMAEDAKKRNAAEAGAICTVMREGLY
HSSAMEGDDGLEDSKVYIDLGDDEPGVLDEALQKLIAEAEANGMSETGVE
ELTEMIQEFKPVFG*

spliced messenger RNA

>Gcaud236.t1 ID=Gcaud236.t1|Name=Gcaud236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at NODE_1316_length_11484_cov_5.657158:5537..7246+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGTAACCAGGGCGAGTCTGAAAAGGACGCAACAGTCCGCCAGAC
GATCTTGGCTAACCTTGAAGCACCACGACTACAGGGAGTAGCGACAAAAC
ACTTCACAGCGTTCCAAAAGCGGCGTGATCTGTATGAAAAACAGTTGGCC
GAAAAGAACCGTGAACCAGGTGTAAATGTCACTCCAACGTCCTTCAAGGC
TTCAATCGATGATACCTTGCTTGATATCTTTATCACTGCAGGGTGGATCG
ATGCTGCCTCTGTTGAGGAAATCACAGAGGAGCAGTTGCAGAACTGCGTA
CGCGAGAGGGCTAATTTTGAGCCAGAAGGTGATGACCTCTCGCGTATCCG
CTATCTCATCCGTAAGGTCAAGATGGATGACTCCATAAAGGACCCGGAGC
AGCGCGTGTGGACATTACACTACAAGTATGTCACCACCCTGCACTCTCAT
GGACTCCGTGATCTTCCAAAGACGAAACCACACATCGCAATTAAGCACAT
TCTAAAGGTGATCAAACCGAAGAGGCTTCGTGAGCGTATGCAGGATATTG
TCGAATGGAAGAAGGACGAACATTTCGAGAAGAAAGATTTCGGCGCGTTC
ATGAGAGAGTTGGCTAGACAAGCCAAGAAGCTCGAAGAGAAGCGTGGACC
AGACAGAATCAGTGAGAGCGAGGACGAAAGCGAGCATGATGATTCGTCGC
GCTCTACCGAGAAGGAGTCACGCAAGTTCGAGCGATCCAAGAACAGCAAG
GACAAAAGGAGTGGAAAGAAGAGAGGCCGAAACGATCAAGGAGGAAGAGA
CAGCAAGGGGGAGATATTTGACCAAATCCTATTGGCCAAACCAGCGCTGC
AGCTCCAAAAGTTGGACCCGCCCCATTTGTATAATGGCATAGCAAAGAAT
GGCGAGCCGATTACGTGCACTGATGAGATTTCGCTGGACATTCAGCTAAG
AATCCGTCACGGTACGAGGCTTGCGCTGCGCTCAATGCTGTGGAAGGTAG
GAGAGGCTGCGATTGACCAAGTAATCATAGGCCGGGAAGTCCTTCAGTCC
ATTGGGTGCGACAACCGGGCTATCTTAGCAGCTGCATGCGATAAGAACGA
TGGAGTTATCAACATTCCAACCGCAATGGCAGAAGACGCAAAGAAGCGTA
ATGCCGCTGAGGCCGGTGCCATCTGTACCGTAATGCGGGAAGGCCTCTAC
CATAGCAGTGCCATGGAAGGAGACGATGGTTTGGAAGACAGCAAGGTATA
CATTGACCTTGGTGACGATGAACCAGGAGTTCTCGATGAGGCTTTGCAAA
AGCTCATCGCCGAGGCAGAAGCGAATGGTATGTCCGAGACAGGGGTTGAA
GAACTCACAGAAATGAttcaagaattcaaaccggttttcggttaa

protein sequence of Gcaud236.t1

>Gcaud236.t1 ID=Gcaud236.t1|Name=Gcaud236.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=465bp
MSSNQGESEKDATVRQTILANLEAPRLQGVATKHFTAFQKRRDLYEKQLA
EKNREPGVNVTPTSFKASIDDTLLDIFITAGWIDAASVEEITEEQLQNCV
RERANFEPEGDDLSRIRYLIRKVKMDDSIKDPEQRVWTLHYKYVTTLHSH
GLRDLPKTKPHIAIKHILKVIKPKRLRERMQDIVEWKKDEHFEKKDFGAF
MRELARQAKKLEEKRGPDRISESEDESEHDDSSRSTEKESRKFERSKNSK
DKRSGKKRGRNDQGGRDSKGEIFDQILLAKPALQLQKLDPPHLYNGIAKN
GEPITCTDEISLDIQLRIRHGTRLALRSMLWKVGEAAIDQVIIGREVLQS
IGCDNRAILAAACDKNDGVINIPTAMAEDAKKRNAAEAGAICTVMREGLY
HSSAMEGDDGLEDSKVYIDLGDDEPGVLDEALQKLIAEAEANGMSETGVE
ELTEMIQEFKPVFG*

mRNA from alignment at NODE_1316_length_11484_cov_5.657158:5537..7246+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud236.t1 ID=Gcaud236.t1|Name=Gcaud236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at NODE_1316_length_11484_cov_5.657158:5537..7246+ (Gracilaria caudata M_176_S67 male)
ATGAGCAGTAACCAGGGCGAGTCTGAAAAGGACGCAACAGTCCGCCAGAC
GATCTTGGCTAACCTTGAAGCACCACGACTACAGGGAGTAGCGACAAAAC
ACTTCACAGCGTTCCAAAAGCGGCGTGATCTGTATGAAAAACAGTTGGCC
GAAAAGAACCGTGAACCAGGTGTAAATGTCACTCCAACGTCCTTCAAGGC
TTCAATCGATGATACCTTGCTTGATATCTTTATCACTGCAGGGTGGATCG
ATGCTGCCTCTGTTGAGGAAATCACAGAGGAGCAGTTGCAGAACTGCGTA
CGCGAGAGGGCTAATTTTGAGCCAGAAGGTGATGACCTCTCGCGTATCCG
CTATCTCATCCGTAAGGTCAAGATGGATGACTCCATAAAGGACCCGGAGC
AGCGCGTGTGGACATTACACTACAAGTATGTCACCACCCTGCACTCTCAT
GGACTCCGTGATCTTCCAAAGACGAAACCACACATCGCAATTAAGCACAT
TCTAAAGGTGATCAAACCGAAGAGGCTTCGTGAGCGTATGCAGGATATTG
TCGAATGGAAGAAGGACGAACATTTCGAGAAGAAAGATTTCGGCGCGTTC
ATGAGAGAGTTGGCTAGACAAGCCAAGAAGCTCGAAGAGAAGCGTGGACC
AGACAGAATCAGTGAGAGCGAGGACGAAAGCGAGCATGATGATTCGTCGC
GCTCTACCGAGAAGGAGTCACGCAAGTTCGAGCGATCCAAGAACAGCAAG
GACAAAAGGAGTGGAAAGAAGAGAGGCCGAAACGATCAAGGAGGAAGAGA
CAGCAAGGGGGGTAGCTctaagaagcggaagcgagacctacctctctgtc
tcaatccagattgtggcgagcaccactatgtcaagaactgtaagaacact
tccgaagagcagaagacgaagctgctcaaggagttcaaagcgcagaagaa
gcgcgacgccaagaacaaagacaatgacagtggctcgacaaagggcagag
ttaaccgcatcgcggcagaccgtattgactcccactcgtcgttgttcagc
ggcttcttctgtgacggagccgtcgaggttgtggtcatggcggatcaagg
ttcagatgtgaatctcatcccGAGAGAGATATTTGACCAAATCCTATTGG
CCAAACCAGCGCTGCAGCTCCAAAAGTTGGACCCGCCCCATTTGTATAAT
GGCATAGCAAAGAATGGCGAGCCGATTACGTGCACTGATGAGATTTCGCT
GGACATTCAGCTAAGAATCCGTCACGGTACGAGGCTTGCGCTGCGCTCAA
TGCTGTGGAAGGTAGGAGAGGCTGCGATTGACCAAGTAATCATAGGCCGG
GAAGTCCTTCAGTCCATTGGGTGCGACAACCGGGCTATCTTAGCAGCTGC
ATGCGATAAGAACGATGGAGTTATCAACATTCCAACCGCAATGGCAGAAG
ACGCAAAGAAGCGTAATGCCGCTGAGGCCGGTGCCATCTGTACCGTAATG
CGGGAAGGCCTCTACCATAGCAGTGCCATGGAAGGAGACGATGGTTTGGA
AGACAGCAAGGTATACATTGACCTTGGTGACGATGAACCAGGAGTTCTCG
ATGAGGCTTTGCAAAAGCTCATCGCCGAGGCAGAAGCGAATGGTATGTCC
GAGACAGGGGTTGAAGAACTCACAGAAATGAttcaagaattcaaaccggt
tttcggttaa

Coding sequence (CDS) from alignment at NODE_1316_length_11484_cov_5.657158:5537..7246+

>Gcaud236.t1 ID=Gcaud236.t1|Name=Gcaud236.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1395bp|location=Sequence derived from alignment at NODE_1316_length_11484_cov_5.657158:5537..7246+ (Gracilaria caudata M_176_S67 male)
ATGAGCAGTAACCAGGGCGAGTCTGAAAAGGACGCAACAGTCCGCCAGAC
GATCTTGGCTAACCTTGAAGCACCACGACTACAGGGAGTAGCGACAAAAC
ACTTCACAGCGTTCCAAAAGCGGCGTGATCTGTATGAAAAACAGTTGGCC
GAAAAGAACCGTGAACCAGGTGTAAATGTCACTCCAACGTCCTTCAAGGC
TTCAATCGATGATACCTTGCTTGATATCTTTATCACTGCAGGGTGGATCG
ATGCTGCCTCTGTTGAGGAAATCACAGAGGAGCAGTTGCAGAACTGCGTA
CGCGAGAGGGCTAATTTTGAGCCAGAAGGTGATGACCTCTCGCGTATCCG
CTATCTCATCCGTAAGGTCAAGATGGATGACTCCATAAAGGACCCGGAGC
AGCGCGTGTGGACATTACACTACAAGTATGTCACCACCCTGCACTCTCAT
GGACTCCGTGATCTTCCAAAGACGAAACCACACATCGCAATTAAGCACAT
TCTAAAGGTGATCAAACCGAAGAGGCTTCGTGAGCGTATGCAGGATATTG
TCGAATGGAAGAAGGACGAACATTTCGAGAAGAAAGATTTCGGCGCGTTC
ATGAGAGAGTTGGCTAGACAAGCCAAGAAGCTCGAAGAGAAGCGTGGACC
AGACAGAATCAGTGAGAGCGAGGACGAAAGCGAGCATGATGATTCGTCGC
GCTCTACCGAGAAGGAGTCACGCAAGTTCGAGCGATCCAAGAACAGCAAG
GACAAAAGGAGTGGAAAGAAGAGAGGCCGAAACGATCAAGGAGGAAGAGA
CAGCAAGGGGGAGATATTTGACCAAATCCTATTGGCCAAACCAGCGCTGC
AGCTCCAAAAGTTGGACCCGCCCCATTTGTATAATGGCATAGCAAAGAAT
GGCGAGCCGATTACGTGCACTGATGAGATTTCGCTGGACATTCAGCTAAG
AATCCGTCACGGTACGAGGCTTGCGCTGCGCTCAATGCTGTGGAAGGTAG
GAGAGGCTGCGATTGACCAAGTAATCATAGGCCGGGAAGTCCTTCAGTCC
ATTGGGTGCGACAACCGGGCTATCTTAGCAGCTGCATGCGATAAGAACGA
TGGAGTTATCAACATTCCAACCGCAATGGCAGAAGACGCAAAGAAGCGTA
ATGCCGCTGAGGCCGGTGCCATCTGTACCGTAATGCGGGAAGGCCTCTAC
CATAGCAGTGCCATGGAAGGAGACGATGGTTTGGAAGACAGCAAGGTATA
CATTGACCTTGGTGACGATGAACCAGGAGTTCTCGATGAGGCTTTGCAAA
AGCTCATCGCCGAGGCAGAAGCGAATGGTATGTCCGAGACAGGGGTTGAA
GAACTCACAGAAATGAttcaagaattcaaaccggttttcggttaa