Gcaud2165.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2165.t1
Unique NameGcaud2165.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1305_length_11579_cov_8.061368contigNODE_1305_length_11579_cov_8.061368:1902..2219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2165Gcaud2165Gracilaria caudata M_176_S67 malegeneNODE_1305_length_11579_cov_8.061368 1902..2219 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2165.t1.stop1Gcaud2165.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1305_length_11579_cov_8.061368 1902..1904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2165.t1.CDS1Gcaud2165.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1305_length_11579_cov_8.061368 1902..2219 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2165.t1.exon1Gcaud2165.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1305_length_11579_cov_8.061368 1902..2219 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2165.t1.start1Gcaud2165.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1305_length_11579_cov_8.061368 2217..2219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2165.t1Gcaud2165.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1305_length_11579_cov_8.061368 1902..2219 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2165.t1 ID=Gcaud2165.t1|Name=Gcaud2165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=106bp
MATPEKKPSRKNKALHNMKQRLEDFQAVTEALKQKESRERSLLELVQSLK
NEIHQLCAEQMERSSKSRGTRRLGLRIRPHQLENLTREELCPMKTEIDNR
LSKMK*
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spliced messenger RNA

>Gcaud2165.t1 ID=Gcaud2165.t1|Name=Gcaud2165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:1902..2219- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACACCTGAAAAGAAACCATCTCGAAAGAATAAGGCCCTCCATAA
TATGAAGCAGCGCCTGGAGGATTTTCAGGCGGTCACAGAGGCTTTGAAAC
AGAAGGAAAGTAGAGAGCGATCCCTACTTGAGTTAGTGCAGAGCTTGAAG
AACGAAATTCATCAGCTTTGTGCTGAACAGATGGAGAGGTCCTCGAAGTC
GAGGGGCACCAGACGTCTTGGACTTCGCATACGGCCACATCAGTTGGAAA
ACTTGACTCGAGAAGAATTATGTCCCATGAAGACTGAAATTGATAATCGT
CTTAGTAAGATGAAGTAA
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protein sequence of Gcaud2165.t1

>Gcaud2165.t1 ID=Gcaud2165.t1|Name=Gcaud2165.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=106bp
MATPEKKPSRKNKALHNMKQRLEDFQAVTEALKQKESRERSLLELVQSLK
NEIHQLCAEQMERSSKSRGTRRLGLRIRPHQLENLTREELCPMKTEIDNR
LSKMK*
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mRNA from alignment at NODE_1305_length_11579_cov_8.061368:1902..2219-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2165.t1 ID=Gcaud2165.t1|Name=Gcaud2165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:1902..2219- (Gracilaria caudata M_176_S67 male)
ATGGCTACACCTGAAAAGAAACCATCTCGAAAGAATAAGGCCCTCCATAA
TATGAAGCAGCGCCTGGAGGATTTTCAGGCGGTCACAGAGGCTTTGAAAC
AGAAGGAAAGTAGAGAGCGATCCCTACTTGAGTTAGTGCAGAGCTTGAAG
AACGAAATTCATCAGCTTTGTGCTGAACAGATGGAGAGGTCCTCGAAGTC
GAGGGGCACCAGACGTCTTGGACTTCGCATACGGCCACATCAGTTGGAAA
ACTTGACTCGAGAAGAATTATGTCCCATGAAGACTGAAATTGATAATCGT
CTTAGTAAGATGAAGTAA
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Coding sequence (CDS) from alignment at NODE_1305_length_11579_cov_8.061368:1902..2219-

>Gcaud2165.t1 ID=Gcaud2165.t1|Name=Gcaud2165.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=318bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:1902..2219- (Gracilaria caudata M_176_S67 male)
ATGGCTACACCTGAAAAGAAACCATCTCGAAAGAATAAGGCCCTCCATAA
TATGAAGCAGCGCCTGGAGGATTTTCAGGCGGTCACAGAGGCTTTGAAAC
AGAAGGAAAGTAGAGAGCGATCCCTACTTGAGTTAGTGCAGAGCTTGAAG
AACGAAATTCATCAGCTTTGTGCTGAACAGATGGAGAGGTCCTCGAAGTC
GAGGGGCACCAGACGTCTTGGACTTCGCATACGGCCACATCAGTTGGAAA
ACTTGACTCGAGAAGAATTATGTCCCATGAAGACTGAAATTGATAATCGT
CTTAGTAAGATGAAGTAA
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