Gcaud2166.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2166.t1
Unique Name	Gcaud2166.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1305_length_11579_cov_8.061368	contig	NODE_1305_length_11579_cov_8.061368:2229..3422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2166	Gcaud2166	Gracilaria caudata M_176_S67 male	gene	NODE_1305_length_11579_cov_8.061368 2229..3422 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2166.t1.stop1	Gcaud2166.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1305_length_11579_cov_8.061368 2229..2231 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2166.t1.CDS1	Gcaud2166.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1305_length_11579_cov_8.061368 2229..3422 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2166.t1.exon1	Gcaud2166.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1305_length_11579_cov_8.061368 2229..3422 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2166.t1.start1	Gcaud2166.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1305_length_11579_cov_8.061368 3420..3422 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2166.t1	Gcaud2166.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1305_length_11579_cov_8.061368 2229..3422 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1305_length_11579_cov_8.061368:2229..3422-
coding sequence from alignment at NODE_1305_length_11579_cov_8.061368:2229..3422-

mRNA sequence

>Gcaud2166.t1 ID=Gcaud2166.t1|Name=Gcaud2166.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=398bp
MDNRHPLAVATQIMASLRSQSPTPMPIRLIHHLPEFERLMRPVNPFEVLS
LSKKMFIERFRSNEPITVLEPLFKFDNVFVKLPCYILAGNHRLAGARDSL
THLVYAQVLNKDHVMPVYQAVKDLHMQAQNRPFSDELVRQMLFDALKFLV
VISNTRGLSPASYSALQQVLALRTMVYSDPGVPKPYSKDKKVYGGYKYLR
KRFFGREEICASDTHDRSNFLYNGSHCARHMNRQLLGCMRLIETDLSQPI
PFVGHETCVLDILVLLENHNLMPLVKDTHIGYAGELNSKQLIEIIEASVE
GLRSQNNMVASNGALKFSPLCTPFIKAVKVGSLTPTIIRLTSQPKRQAKR
VREEEEELGGKKIARNIKVPENVAQKKKYDFGDHNGETGSETLSGSI*

spliced messenger RNA

>Gcaud2166.t1 ID=Gcaud2166.t1|Name=Gcaud2166.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:2229..3422- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAACCGTCATCCTCTAGCAGTTGCGACCCAAATCATGGCCAGCCT
CCGTTCCCAGTCGCCTACACCAATGCCCATTCGATTAATACATCATTTGC
CGGAGTTCGAGAGGTTAATGAGACCGGTCAATCCATTTGAAGTACTGTCG
CTAAGCAAGAAGATGTTCATCGAACGATTTCGATCTAACGAACCTATAAC
AGTTCTAGAGCCACTTTTTAAATTTGACAACGTTTTCGTTAAGCTTCCCT
GTTATATTTTGGCCGGTAATCACCGTCTTGCTGGTGCAAGAGACTCCTTG
ACGCATTTAGTGTATGCTCAAGTTTTGAACAAAGACCACGTCATGCCTGT
CTATCAAGCTGTCAAAGACCTACATATGCAAGCTCAAAATAGGCCTTTCT
CAGACGAATTAGTCCGCCAAATGCTTTTCGATGCACTTAAGTTTCTTGTG
GTTATATCCAACACCCGTGGTTTGTCACCGGCCTCTTATTCTGCTTTGCA
GCAGGTACTTGCTCTACGCACTATGGTTTACAGTGACCCTGGAGTTCCCA
AGCCCTACTCGAAGGACAAAAAGGTGTACGGAGGATATAAGTACTTACGA
AAACGCTTTTTTGGAAGGGAAGAGATTTGTGCATCAGACACGCACGATCG
TAGTAACTTTCTATACAATGGTTCACATTGTGCTCGTCACATGAACAGAC
AGCTTTTGGGGTGTATGCGTCTGATTGAGACAGATCTGTCTCAGCCAATT
CCATTCGTTGGTCATGAAACCTGCGTGCTAGATATATTAGTCCTCCTGGA
AAACCACAATCTTATGCCTCTCGTCAAGGATACGCATATTGGATATGCAG
GAGAGCTGAACTCTAAGCAGCTTATTGAGATTATCGAAGCTTCTGTTGAG
GGACTTAGATCTCAAAACAATATGGTTGCAAGTAATGGAGCTTTGAAGTT
TTCCCCGCTTTGCACCCCATTCATTAAGGCAGTGAAAGTTGGTTCTCTTA
CCCCGACGATAATCAGGCTGACAAGTCAACCCAAGCGGCAAGCAAAACGA
GTGAGAGAGGAGGAGGAAGAACTTGGTGGGAAAAAAATTGCAAGAAACAT
CAAGGTCCCAGAGAATGTAGCGCAGAAGAAGAAATATGATTTTGGCGATC
ACAATGGCGAAACTGGTAGTGAGACTTTATCTGGGAGCATATGA

protein sequence of Gcaud2166.t1

>Gcaud2166.t1 ID=Gcaud2166.t1|Name=Gcaud2166.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=398bp
MDNRHPLAVATQIMASLRSQSPTPMPIRLIHHLPEFERLMRPVNPFEVLS
LSKKMFIERFRSNEPITVLEPLFKFDNVFVKLPCYILAGNHRLAGARDSL
THLVYAQVLNKDHVMPVYQAVKDLHMQAQNRPFSDELVRQMLFDALKFLV
VISNTRGLSPASYSALQQVLALRTMVYSDPGVPKPYSKDKKVYGGYKYLR
KRFFGREEICASDTHDRSNFLYNGSHCARHMNRQLLGCMRLIETDLSQPI
PFVGHETCVLDILVLLENHNLMPLVKDTHIGYAGELNSKQLIEIIEASVE
GLRSQNNMVASNGALKFSPLCTPFIKAVKVGSLTPTIIRLTSQPKRQAKR
VREEEEELGGKKIARNIKVPENVAQKKKYDFGDHNGETGSETLSGSI*

mRNA from alignment at NODE_1305_length_11579_cov_8.061368:2229..3422-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2166.t1 ID=Gcaud2166.t1|Name=Gcaud2166.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:2229..3422- (Gracilaria caudata M_176_S67 male)
ATGGATAACCGTCATCCTCTAGCAGTTGCGACCCAAATCATGGCCAGCCT
CCGTTCCCAGTCGCCTACACCAATGCCCATTCGATTAATACATCATTTGC
CGGAGTTCGAGAGGTTAATGAGACCGGTCAATCCATTTGAAGTACTGTCG
CTAAGCAAGAAGATGTTCATCGAACGATTTCGATCTAACGAACCTATAAC
AGTTCTAGAGCCACTTTTTAAATTTGACAACGTTTTCGTTAAGCTTCCCT
GTTATATTTTGGCCGGTAATCACCGTCTTGCTGGTGCAAGAGACTCCTTG
ACGCATTTAGTGTATGCTCAAGTTTTGAACAAAGACCACGTCATGCCTGT
CTATCAAGCTGTCAAAGACCTACATATGCAAGCTCAAAATAGGCCTTTCT
CAGACGAATTAGTCCGCCAAATGCTTTTCGATGCACTTAAGTTTCTTGTG
GTTATATCCAACACCCGTGGTTTGTCACCGGCCTCTTATTCTGCTTTGCA
GCAGGTACTTGCTCTACGCACTATGGTTTACAGTGACCCTGGAGTTCCCA
AGCCCTACTCGAAGGACAAAAAGGTGTACGGAGGATATAAGTACTTACGA
AAACGCTTTTTTGGAAGGGAAGAGATTTGTGCATCAGACACGCACGATCG
TAGTAACTTTCTATACAATGGTTCACATTGTGCTCGTCACATGAACAGAC
AGCTTTTGGGGTGTATGCGTCTGATTGAGACAGATCTGTCTCAGCCAATT
CCATTCGTTGGTCATGAAACCTGCGTGCTAGATATATTAGTCCTCCTGGA
AAACCACAATCTTATGCCTCTCGTCAAGGATACGCATATTGGATATGCAG
GAGAGCTGAACTCTAAGCAGCTTATTGAGATTATCGAAGCTTCTGTTGAG
GGACTTAGATCTCAAAACAATATGGTTGCAAGTAATGGAGCTTTGAAGTT
TTCCCCGCTTTGCACCCCATTCATTAAGGCAGTGAAAGTTGGTTCTCTTA
CCCCGACGATAATCAGGCTGACAAGTCAACCCAAGCGGCAAGCAAAACGA
GTGAGAGAGGAGGAGGAAGAACTTGGTGGGAAAAAAATTGCAAGAAACAT
CAAGGTCCCAGAGAATGTAGCGCAGAAGAAGAAATATGATTTTGGCGATC
ACAATGGCGAAACTGGTAGTGAGACTTTATCTGGGAGCATATGA

Coding sequence (CDS) from alignment at NODE_1305_length_11579_cov_8.061368:2229..3422-

>Gcaud2166.t1 ID=Gcaud2166.t1|Name=Gcaud2166.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1194bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:2229..3422- (Gracilaria caudata M_176_S67 male)
ATGGATAACCGTCATCCTCTAGCAGTTGCGACCCAAATCATGGCCAGCCT
CCGTTCCCAGTCGCCTACACCAATGCCCATTCGATTAATACATCATTTGC
CGGAGTTCGAGAGGTTAATGAGACCGGTCAATCCATTTGAAGTACTGTCG
CTAAGCAAGAAGATGTTCATCGAACGATTTCGATCTAACGAACCTATAAC
AGTTCTAGAGCCACTTTTTAAATTTGACAACGTTTTCGTTAAGCTTCCCT
GTTATATTTTGGCCGGTAATCACCGTCTTGCTGGTGCAAGAGACTCCTTG
ACGCATTTAGTGTATGCTCAAGTTTTGAACAAAGACCACGTCATGCCTGT
CTATCAAGCTGTCAAAGACCTACATATGCAAGCTCAAAATAGGCCTTTCT
CAGACGAATTAGTCCGCCAAATGCTTTTCGATGCACTTAAGTTTCTTGTG
GTTATATCCAACACCCGTGGTTTGTCACCGGCCTCTTATTCTGCTTTGCA
GCAGGTACTTGCTCTACGCACTATGGTTTACAGTGACCCTGGAGTTCCCA
AGCCCTACTCGAAGGACAAAAAGGTGTACGGAGGATATAAGTACTTACGA
AAACGCTTTTTTGGAAGGGAAGAGATTTGTGCATCAGACACGCACGATCG
TAGTAACTTTCTATACAATGGTTCACATTGTGCTCGTCACATGAACAGAC
AGCTTTTGGGGTGTATGCGTCTGATTGAGACAGATCTGTCTCAGCCAATT
CCATTCGTTGGTCATGAAACCTGCGTGCTAGATATATTAGTCCTCCTGGA
AAACCACAATCTTATGCCTCTCGTCAAGGATACGCATATTGGATATGCAG
GAGAGCTGAACTCTAAGCAGCTTATTGAGATTATCGAAGCTTCTGTTGAG
GGACTTAGATCTCAAAACAATATGGTTGCAAGTAATGGAGCTTTGAAGTT
TTCCCCGCTTTGCACCCCATTCATTAAGGCAGTGAAAGTTGGTTCTCTTA
CCCCGACGATAATCAGGCTGACAAGTCAACCCAAGCGGCAAGCAAAACGA
GTGAGAGAGGAGGAGGAAGAACTTGGTGGGAAAAAAATTGCAAGAAACAT
CAAGGTCCCAGAGAATGTAGCGCAGAAGAAGAAATATGATTTTGGCGATC
ACAATGGCGAAACTGGTAGTGAGACTTTATCTGGGAGCATATGA