Gcaud2167.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2167.t1
Unique NameGcaud2167.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length233
Homology
BLAST of Gcaud2167.t1 vs. uniprot
Match: A0A2V3J4S3_9FLOR (Splicing factor 3B subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4S3_9FLOR)

HSP 1 Score: 358 bits (920), Expect = 1.330e-112
Identity = 183/233 (78.54%), Postives = 202/233 (86.70%), Query Frame = 0
Query:    1 MKPEDYKNF---VDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            MKPEDYKNF   +DKN KDE LP EE VERK+MR+LLK+KNGT NVRK A+RQISEKAR+FGAEPLLKQILPLLMSPTLEHQERHLY KV + ILH+L +LVRP VRHILVV+E ML++D YYARVEGREIISNL +A  LP MISTMRPDIDHQDEF+ N T RAFAVVTSALGIPS+ P LRAVCGSKKSWEARHTG KT QQ AI+MGVA+LPHL++L EIIQ GL DEQ
Sbjct:  391 MKPEDYKNFAKVLDKNSKDEDLPAEEQVERKIMRLLLKIKNGTPNVRKVAMRQISEKAREFGAEPLLKQILPLLMSPTLEHQERHLYVKVVDRILHKLGELVRPHVRHILVVIEPMLIDDDYYARVEGREIISNLAKAAGLPTMISTMRPDIDHQDEFVRNTTARAFAVVTSALGIPSMLPFLRAVCGSKKSWEARHTGIKTVQQTAILMGVAVLPHLKELVEIIQSGLLDEQ 623          
BLAST of Gcaud2167.t1 vs. uniprot
Match: R7Q2G9_CHOCR (Putative splicing factor 3b, subunit 1, SF3b1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2G9_CHOCR)

HSP 1 Score: 321 bits (822), Expect = 1.610e-98
Identity = 164/233 (70.39%), Postives = 191/233 (81.97%), Query Frame = 0
Query:    1 MKPEDYKNF---VDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            MKPEDY NF   +DKN  D+ +P E+ VER++MR+LLK+KNG  +VRK A+RQISEKARDFG   L  QILPLLMSPTLEHQERHLY KV + IL++L +LVRP V  ILVV+E ML++D YYARVEGREIISNL +A  LP MISTMRPDIDHQDEF+ N T RAFAVVTSALGIPS+   L+AVC SKK+WEARHTGTK  QQ+AI+MGVA+LPHLR+L EII+ GL DEQ
Sbjct:  405 MKPEDYTNFASILDKNAGDDDIPEEQRVERRIMRLLLKIKNGAPSVRKVAMRQISEKARDFGPARLFNQILPLLMSPTLEHQERHLYVKVIDRILYKLDNLVRPHVHKILVVIEPMLIDDDYYARVEGREIISNLAKAAGLPTMISTMRPDIDHQDEFVRNTTARAFAVVTSALGIPSMLKFLKAVCRSKKTWEARHTGTKVVQQIAILMGVAVLPHLRELVEIIEIGLTDEQ 637          
BLAST of Gcaud2167.t1 vs. uniprot
Match: A0A3M7PDF5_BRAPC (Splicing factor 3B subunit (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PDF5_BRAPC)

HSP 1 Score: 289 bits (739), Expect = 1.710e-95
Identity = 148/232 (63.79%), Postives = 184/232 (79.31%), Query Frame = 0
Query:    1 MKPED--YKNFVDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            MKP+D  Y N +  N  D++LP E+  ERK+M++LLK+KNGT  +RK ALRQI++KAR+FGA PL  QILPLLMSP+LE QERHL  KV + IL++L DLVRP V  ILVV+E +L+++ YYARVEGREIISNL +A  L  MISTMRPDID+ DE++ N T RAFAVV SALGIPS+ P L+AVC SKKSW+ARHTG K  QQ+AI+MG A+LPHL+ L E+I+ GL+DEQ
Sbjct:   26 MKPDDLQYFNKLLDNVDDDSLPPEQAKERKIMKLLLKIKNGTPPMRKSALRQITDKAREFGAGPLFNQILPLLMSPSLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIIQQIAILMGCAILPHLKSLVEVIEHGLEDEQ 257          
BLAST of Gcaud2167.t1 vs. uniprot
Match: A0A7R9PZN1_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9PZN1_9ACAR)

HSP 1 Score: 283 bits (724), Expect = 5.050e-92
Identity = 149/233 (63.95%), Postives = 183/233 (78.54%), Query Frame = 0
Query:    1 MKPEDYKNFVDK---NPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            +KPED + F DK   +  +++L  +E  ERK+M++LLK+KNGT  +RK ALRQI++KAR+FGA PL  QILPLLMSPTLE QERHL  KV + IL++L DLVRP V  ILVV+E +L+++ YYARVEGREIISNL +A  L  MISTMRPDID+ DE++ N T RAFAVV SALGIPS+ P L+AVC SKKSW+ARHTG K  QQ+AI+MG A+LPHLR L EII+ GL DEQ
Sbjct:   73 LKPEDIQYF-DKLLTDVDEDSLSPDEQKERKIMKLLLKIKNGTPPMRKSALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQ 304          
BLAST of Gcaud2167.t1 vs. uniprot
Match: A0A448WQH7_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WQH7_9PLAT)

HSP 1 Score: 280 bits (715), Expect = 9.630e-91
Identity = 142/209 (67.94%), Postives = 169/209 (80.86%), Query Frame = 0
Query:   22 EELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            EE  ERK+M +LLK+KNGT  +RK ALRQI++KAR+FGA PL KQILPLLMSPTLE QERHL  KV + IL++L DLVRP V  ILVV+E +L+++ YYARVEGREIISNL +A  L  MISTMRPDID+ DE++ N T RAFAVV SALGIPS+ P L+AVC SKKSW+ARHTG K  QQ++I+MG A+LPHLR L EII+ GL DEQ
Sbjct:    4 EESRERKIMTLLLKIKNGTPPMRKSALRQITDKAREFGAGPLFKQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQISILMGCAILPHLRSLVEIIEHGLVDEQ 212          
BLAST of Gcaud2167.t1 vs. uniprot
Match: A0A2R7VTB4_ONCFA (SF3b1 domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7VTB4_ONCFA)

HSP 1 Score: 284 bits (726), Expect = 1.620e-90
Identity = 150/234 (64.10%), Postives = 183/234 (78.21%), Query Frame = 0
Query:    1 MKPEDYKNF----VDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            +KPED + F    VD +  +++L  EE  ERK+MR+LLK+KNGT  +RK ALRQI++KAR+FGA PL  QILPLLMSPTLE QERHL  KV + IL++L DLVRP V  ILVV+E +L+++ YYARVEGREIISNL +A  L  MISTMRPDID+ DE++ N T RAFAVV SALGIPS+ P L+AVC SKKSW+ARHTG K  QQ+AI+MG A+LPHL+ L EII+ GL DEQ
Sbjct:   53 LKPEDAQYFDKLLVDVD--EDSLSPEEQKERKIMRLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCRSKKSWQARHTGIKIVQQIAILMGCAILPHLKSLVEIIEHGLVDEQ 284          
BLAST of Gcaud2167.t1 vs. uniprot
Match: U6E0C6_NEOVI (Splicing factor 3B subunit 1 (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6E0C6_NEOVI)

HSP 1 Score: 283 bits (724), Expect = 2.020e-90
Identity = 149/234 (63.68%), Postives = 181/234 (77.35%), Query Frame = 0
Query:    1 MKPEDYKNF----VDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            +KP+D + F    VD +  +  L  EE  ERK+M++LLK+KNGT  +RK ALRQI++KAR+FGA PL  QILPLLMSPTLE QERHL  KV + IL++L DLVRP V  ILVV+E +L+++ YYARVEGREIISNL +A  L  MISTMRPDID+ DE++ N T RAFAVV SALGIPS+ P L+AVC SKKSW+ARHTG K  QQ+AI+MG A+LPHLR L EII+ GL DEQ
Sbjct:  131 LKPDDIQYFDKLLVDVD--ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQ 362          
BLAST of Gcaud2167.t1 vs. uniprot
Match: A0A7S3T4Y7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T4Y7_9SPIT)

HSP 1 Score: 280 bits (716), Expect = 5.920e-90
Identity = 143/233 (61.37%), Postives = 181/233 (77.68%), Query Frame = 0
Query:    1 MKPEDYKNFVDKNPKD---EALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            +KPEDY+ F     +D   E +  EE  ERK+M++LLKVKNGT  +RK ALRQ+++KAR+FGA PL  QILPLLMSPTLE QERHL  KV + +L++L DLVRP V  ILVV+E +L+++ YYARVEGREII+NL +A  L  MI+TMRPDID+ DE++ N T RAF+VV SALG+P++ P L+AVC SKKSW+ARHTG K  QQ+AI+MG ++LPHLR L EII+ GL DEQ
Sbjct:  111 VKPEDYQYFAPLLKEDDEIEDMTPEEARERKIMKLLLKVKNGTPPMRKQALRQLTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIIANLAKAAGLATMIATMRPDIDNVDEYVRNTTARAFSVVASALGVPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCSVLPHLRSLVEIIEAGLGDEQ 343          
BLAST of Gcaud2167.t1 vs. uniprot
Match: A0A5J5CDI2_9PERO (SF3b1 domain-containing protein n=3 Tax=Etheostoma spectabile TaxID=54343 RepID=A0A5J5CDI2_9PERO)

HSP 1 Score: 283 bits (723), Expect = 9.250e-89
Identity = 149/233 (63.95%), Postives = 180/233 (77.25%), Query Frame = 0
Query:    1 MKPEDYKNFVDK---NPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            +KP+D + F DK      +  L  EE  ERK+M++LLK+KNGT  +RK ALRQI++KAR+FGA PL  QILPLLMSPTLE QERHL  KV + IL++L DLVRP V  ILVV+E +L+++ YYARVEGREIISNL +A  L  MISTMRPDID+ DE++ N T RAFAVV SALGIPS+ P L+AVC SKKSW+ARHTG K  QQ+AI+MG A+LPHLR L EII+ GL DEQ
Sbjct:  327 LKPDDIQYF-DKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQ 558          
BLAST of Gcaud2167.t1 vs. uniprot
Match: A0A2P4SI70_BAMTH (SF3b1 domain-containing protein (Fragment) n=1 Tax=Bambusicola thoracicus TaxID=9083 RepID=A0A2P4SI70_BAMTH)

HSP 1 Score: 283 bits (724), Expect = 1.310e-88
Identity = 149/234 (63.68%), Postives = 181/234 (77.35%), Query Frame = 0
Query:    1 MKPEDYKNF----VDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVRPQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDIDHQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTAQQLAIIMGVALLPHLRQLFEIIQGGLQDEQ 230
            +KP+D + F    VD +  +  L  EE  ERK+M++LLK+KNGT  +RK ALRQI++KAR+FGA PL  QILPLLMSPTLE QERHL  KV + IL++L DLVRP V  ILVV+E +L+++ YYARVEGREIISNL +A  L  MISTMRPDID+ DE++ N T RAFAVV SALGIPS+ P L+AVC SKKSW+ARHTG K  QQ+AI+MG A+LPHLR L EII+ GL DEQ
Sbjct:  244 LKPDDIQYFDKLLVDVD--ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQ 475          
The following BLAST results are available for this feature:
BLAST of Gcaud2167.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4S3_9FLOR1.330e-11278.54Splicing factor 3B subunit 1 n=1 Tax=Gracilariopsi... [more]
R7Q2G9_CHOCR1.610e-9870.39Putative splicing factor 3b, subunit 1, SF3b1 n=1 ... [more]
A0A3M7PDF5_BRAPC1.710e-9563.79Splicing factor 3B subunit (Fragment) n=1 Tax=Brac... [more]
A0A7R9PZN1_9ACAR5.050e-9263.95Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
A0A448WQH7_9PLAT9.630e-9167.94Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
A0A2R7VTB4_ONCFA1.620e-9064.10SF3b1 domain-containing protein n=1 Tax=Oncopeltus... [more]
U6E0C6_NEOVI2.020e-9063.68Splicing factor 3B subunit 1 (Fragment) n=1 Tax=Ne... [more]
A0A7S3T4Y7_9SPIT5.920e-9061.37Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A5J5CDI2_9PERO9.250e-8963.95SF3b1 domain-containing protein n=3 Tax=Etheostoma... [more]
A0A2P4SI70_BAMTH1.310e-8863.68SF3b1 domain-containing protein (Fragment) n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 7..231
e-value: 8.8E-8
score: 32.8
IPR038737Splicing factor 3B subunit 1-likePANTHERPTHR12097SPLICING FACTOR 3B, SUBUNIT 1-RELATEDcoord: 1..230
NoneNo IPR availablePANTHERPTHR12097:SF1BNAA06G23400D PROTEINcoord: 1..230
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 27..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1305_length_11579_cov_8.061368contigNODE_1305_length_11579_cov_8.061368:5001..5699 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2167.t1Gcaud2167.t1Gracilaria caudata M_176_S67 malemRNANODE_1305_length_11579_cov_8.061368 5001..5699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2167.t1 ID=Gcaud2167.t1|Name=Gcaud2167.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=233bp
MKPEDYKNFVDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQ
ISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVR
PQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDID
HQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTA
QQLAIIMGVALLPHLRQLFEIIQGGLQDEQVW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR038737SF3b_su1-like
IPR016024ARM-type_fold