Gcaud2167.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2167.t1
Unique Name	Gcaud2167.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	233

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1305_length_11579_cov_8.061368	contig	NODE_1305_length_11579_cov_8.061368:5001..5699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6183.Smp_141630.1
Preferred name	SF3B1
PFAMs	SF3b1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K12828
KEGG Pathway	ko03040,map03040
KEGG Module	M00352
GOs	GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue	7.41e-87
EggNOG OGs	COG5181@1\|root,KOG0213@2759\|Eukaryota,38D0T@33154\|Opisthokonta,3BDRI@33208\|Metazoa,3CS7G@33213\|Bilateria
Description	Splicing factor 3b subunit
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03036,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2167	Gcaud2167	Gracilaria caudata M_176_S67 male	gene	NODE_1305_length_11579_cov_8.061368 5001..5699 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2167.t1.start1	Gcaud2167.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1305_length_11579_cov_8.061368 5001..5003 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2167.t1.CDS1	Gcaud2167.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1305_length_11579_cov_8.061368 5001..5699 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2167.t1.exon1	Gcaud2167.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1305_length_11579_cov_8.061368 5001..5699 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2167.t1.stop1	Gcaud2167.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1305_length_11579_cov_8.061368 5697..5699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2167.t1	Gcaud2167.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1305_length_11579_cov_8.061368 5001..5699 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1305_length_11579_cov_8.061368:5001..5699+
coding sequence from alignment at NODE_1305_length_11579_cov_8.061368:5001..5699+

mRNA sequence

>Gcaud2167.t1 ID=Gcaud2167.t1|Name=Gcaud2167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=233bp
MKPEDYKNFVDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQ
ISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVR
PQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDID
HQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTA
QQLAIIMGVALLPHLRQLFEIIQGGLQDEQVW*

spliced messenger RNA

>Gcaud2167.t1 ID=Gcaud2167.t1|Name=Gcaud2167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:5001..5699+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTGAGGACTACAAGAATTTTGTAGACAAGAACCCCAAGGATGA
GGCCCTCCCCCATGAAGAGCTGGTTGAACGAAAGCTAATGCGAATGCTAT
TGAAGGTTAAGAACGGTACGACTAATGTGAGAAAGGGAGCTTTGCGACAA
ATCTCAGAAAAGGCTCGTGATTTCGGAGCCGAACCTCTCCTGAAACAAAT
ACTCCCACTGCTAATGTCGCCAACCCTCGAGCACCAGGAGAGGCATCTTT
ACGCCAAAGTATTCGAGGGCATACTCCATAGACTGCGTGATCTCGTCCGT
CCTCAGGTCCGCCACATACTTGTTGTCCTTGAACACATGCTCGTCGAAGA
TGGCTACTACGCGAGGGTCGAAGGAAGAGAGATTATATCTAATCTCACCG
AAGCCGTTCGGTTGCCTGCTATGATATCTACCATGCGACCTGACATCGAT
CATCAAGACGAATTTCTGCATAACATAACAGATAGAGCGTTTGCTGTCGT
TACTTCAGCGCTTGGAATTCCGTCGATTTTTCCCCTGTTGAGAGCGGTTT
GTGGGAGCAAGAAGTCCTGGGAAGCGCGGCATACTGGTACCAAGACAGCA
CAACAACTAGCAATTATCATGGGTGTTGCACTGCTTCCACATTTGAGACA
ACTCTTTGAAATTATCCAAGGCGGTCTTCAAGATGAGCAAGTGTGGTAA

protein sequence of Gcaud2167.t1

>Gcaud2167.t1 ID=Gcaud2167.t1|Name=Gcaud2167.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=233bp
MKPEDYKNFVDKNPKDEALPHEELVERKLMRMLLKVKNGTTNVRKGALRQ
ISEKARDFGAEPLLKQILPLLMSPTLEHQERHLYAKVFEGILHRLRDLVR
PQVRHILVVLEHMLVEDGYYARVEGREIISNLTEAVRLPAMISTMRPDID
HQDEFLHNITDRAFAVVTSALGIPSIFPLLRAVCGSKKSWEARHTGTKTA
QQLAIIMGVALLPHLRQLFEIIQGGLQDEQVW*

mRNA from alignment at NODE_1305_length_11579_cov_8.061368:5001..5699+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2167.t1 ID=Gcaud2167.t1|Name=Gcaud2167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:5001..5699+ (Gracilaria caudata M_176_S67 male)
ATGAAGCCTGAGGACTACAAGAATTTTGTAGACAAGAACCCCAAGGATGA
GGCCCTCCCCCATGAAGAGCTGGTTGAACGAAAGCTAATGCGAATGCTAT
TGAAGGTTAAGAACGGTACGACTAATGTGAGAAAGGGAGCTTTGCGACAA
ATCTCAGAAAAGGCTCGTGATTTCGGAGCCGAACCTCTCCTGAAACAAAT
ACTCCCACTGCTAATGTCGCCAACCCTCGAGCACCAGGAGAGGCATCTTT
ACGCCAAAGTATTCGAGGGCATACTCCATAGACTGCGTGATCTCGTCCGT
CCTCAGGTCCGCCACATACTTGTTGTCCTTGAACACATGCTCGTCGAAGA
TGGCTACTACGCGAGGGTCGAAGGAAGAGAGATTATATCTAATCTCACCG
AAGCCGTTCGGTTGCCTGCTATGATATCTACCATGCGACCTGACATCGAT
CATCAAGACGAATTTCTGCATAACATAACAGATAGAGCGTTTGCTGTCGT
TACTTCAGCGCTTGGAATTCCGTCGATTTTTCCCCTGTTGAGAGCGGTTT
GTGGGAGCAAGAAGTCCTGGGAAGCGCGGCATACTGGTACCAAGACAGCA
CAACAACTAGCAATTATCATGGGTGTTGCACTGCTTCCACATTTGAGACA
ACTCTTTGAAATTATCCAAGGCGGTCTTCAAGATGAGCAAGTGTGGTAA

Coding sequence (CDS) from alignment at NODE_1305_length_11579_cov_8.061368:5001..5699+

>Gcaud2167.t1 ID=Gcaud2167.t1|Name=Gcaud2167.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=699bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:5001..5699+ (Gracilaria caudata M_176_S67 male)
ATGAAGCCTGAGGACTACAAGAATTTTGTAGACAAGAACCCCAAGGATGA
GGCCCTCCCCCATGAAGAGCTGGTTGAACGAAAGCTAATGCGAATGCTAT
TGAAGGTTAAGAACGGTACGACTAATGTGAGAAAGGGAGCTTTGCGACAA
ATCTCAGAAAAGGCTCGTGATTTCGGAGCCGAACCTCTCCTGAAACAAAT
ACTCCCACTGCTAATGTCGCCAACCCTCGAGCACCAGGAGAGGCATCTTT
ACGCCAAAGTATTCGAGGGCATACTCCATAGACTGCGTGATCTCGTCCGT
CCTCAGGTCCGCCACATACTTGTTGTCCTTGAACACATGCTCGTCGAAGA
TGGCTACTACGCGAGGGTCGAAGGAAGAGAGATTATATCTAATCTCACCG
AAGCCGTTCGGTTGCCTGCTATGATATCTACCATGCGACCTGACATCGAT
CATCAAGACGAATTTCTGCATAACATAACAGATAGAGCGTTTGCTGTCGT
TACTTCAGCGCTTGGAATTCCGTCGATTTTTCCCCTGTTGAGAGCGGTTT
GTGGGAGCAAGAAGTCCTGGGAAGCGCGGCATACTGGTACCAAGACAGCA
CAACAACTAGCAATTATCATGGGTGTTGCACTGCTTCCACATTTGAGACA
ACTCTTTGAAATTATCCAAGGCGGTCTTCAAGATGAGCAAGTGTGGTAA