Gcaud2170.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2170.t1
Unique NameGcaud2170.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1305_length_11579_cov_8.061368contigNODE_1305_length_11579_cov_8.061368:7584..8319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1120956.JHZK01000008_gene561
PFAMsCreatininase
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00615
KEGG koko:K01470
KEGG ReactionR01884
KEGG Pathwayko00330,map00330
Evalue4.4e-23
EggNOG OGsCOG1402@1|root,COG1402@2|Bacteria,1MXR9@1224|Proteobacteria,2TUFR@28211|Alphaproteobacteria,1JNZA@119043|Rhodobiaceae
EC3.5.2.10
DescriptionCreatinine amidohydrolase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2170Gcaud2170Gracilaria caudata M_176_S67 malegeneNODE_1305_length_11579_cov_8.061368 7584..8319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2170.t1Gcaud2170.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1305_length_11579_cov_8.061368 7584..8319 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2170.t1.stop1Gcaud2170.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1305_length_11579_cov_8.061368 7584..7586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2170.t1.CDS1Gcaud2170.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1305_length_11579_cov_8.061368 7584..7984 -
Gcaud2170.t1.CDS2Gcaud2170.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1305_length_11579_cov_8.061368 8142..8319 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2170.t1.exon1Gcaud2170.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1305_length_11579_cov_8.061368 7584..7984 -
Gcaud2170.t1.exon2Gcaud2170.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1305_length_11579_cov_8.061368 8142..8319 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2170.t1.intron1Gcaud2170.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1305_length_11579_cov_8.061368 7985..8141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2170.t1.start1Gcaud2170.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1305_length_11579_cov_8.061368 8317..8319 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2170.t1 ID=Gcaud2170.t1|Name=Gcaud2170.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=193bp
MQLAILPLGSTESHGPHLPLGTDAIQESELEDKATEGLLDIATLPLGSFG
ASFEHTGFPAVSFNVQAMLAKAYGELVDRNLSSDEILNGIHGGLIETSVM
LHLHPELVRVDLLRDFRTRPELHSHLEPYGTVVLYGWYMEDLCRDGAVGN
AEASTVELRSQIFKRSVMELRAVIEDMIKSDLKELLVVKSNS*
back to top

spliced messenger RNA

>Gcaud2170.t1 ID=Gcaud2170.t1|Name=Gcaud2170.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=579bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:7584..8319- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTAGCAATATTGCCACTGGGGTCGACAGAATCACATGGTCCTCA
TCTTCCGCTCGGCACAGACGCAATCCAGGAATCAGAACTCGAGGATAAAG
CCACTGAAGGGCTGCTGGACATTGCCACTCTACCACTAGGCTCTTTTGGG
GCCAGTTTCGAGCATACCGGGTTCCCCGCCGTCAGTTTCAATGTTCAAGC
AATGCTGGCTAAAGCCTACGGTGAGCTTGTTGACAGGAATTTGAGTTCAG
ATGAAATACTAAACGGCATTCATGGAGGTTTGATTGAAACGTCTGTTATG
CTGCATTTGCATCCCGAATTAGTTCGGGTTGATCTTCTACGCGACTTCAG
GACGAGACCGGAACTTCACTCTCACCTGGAACCGTACGGAACCGTTGTGC
TTTATGGGTGGTATATGGAGGACCTTTGCAGGGATGGAGCGGTTGGGAAT
GCCGAAGCGTCAACCGTTGAGCTCCGTTCACAAATCTTTAAACGAAGCGT
GATGGAGCTAAGAGCGGTTATCGAAGACATGATAAAAAGTGATCTGAAGG
AACTTCTGGTGGTGAAAAGCAATAGTTAA
back to top

protein sequence of Gcaud2170.t1

>Gcaud2170.t1 ID=Gcaud2170.t1|Name=Gcaud2170.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=193bp
MQLAILPLGSTESHGPHLPLGTDAIQESELEDKATEGLLDIATLPLGSFG
ASFEHTGFPAVSFNVQAMLAKAYGELVDRNLSSDEILNGIHGGLIETSVM
LHLHPELVRVDLLRDFRTRPELHSHLEPYGTVVLYGWYMEDLCRDGAVGN
AEASTVELRSQIFKRSVMELRAVIEDMIKSDLKELLVVKSNS*
back to top

mRNA from alignment at NODE_1305_length_11579_cov_8.061368:7584..8319-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2170.t1 ID=Gcaud2170.t1|Name=Gcaud2170.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=736bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:7584..8319- (Gracilaria caudata M_176_S67 male)
ATGCAGCTAGCAATATTGCCACTGGGGTCGACAGAATCACATGGTCCTCA
TCTTCCGCTCGGCACAGACGCAATCCAGGAATCAGAACTCGAGGATAAAG
CCACTGAAGGGCTGCTGGACATTGCCACTCTACCACTAGGCTCTTTTGGG
GCCAGTTTCGAGCATACCGGGTTCCCCGGTACGATTGCGGATTCTTAACG
GCTTCTGGGGCGACATAACGAAGAGCGTAGTTCGGTGAGGGGTGAAAAAA
CTGCTGTTCGTGAACAGCCATGGGGGTCAGACCAGCAACGTCCAAATCAT
CATTTGCAATGCTAGATTCGAGCACAACGTGTTAGCCGTCAGTTTCAATG
TTCAAGCAATGCTGGCTAAAGCCTACGGTGAGCTTGTTGACAGGAATTTG
AGTTCAGATGAAATACTAAACGGCATTCATGGAGGTTTGATTGAAACGTC
TGTTATGCTGCATTTGCATCCCGAATTAGTTCGGGTTGATCTTCTACGCG
ACTTCAGGACGAGACCGGAACTTCACTCTCACCTGGAACCGTACGGAACC
GTTGTGCTTTATGGGTGGTATATGGAGGACCTTTGCAGGGATGGAGCGGT
TGGGAATGCCGAAGCGTCAACCGTTGAGCTCCGTTCACAAATCTTTAAAC
GAAGCGTGATGGAGCTAAGAGCGGTTATCGAAGACATGATAAAAAGTGAT
CTGAAGGAACTTCTGGTGGTGAAAAGCAATAGTTAA
back to top

Coding sequence (CDS) from alignment at NODE_1305_length_11579_cov_8.061368:7584..8319-

>Gcaud2170.t1 ID=Gcaud2170.t1|Name=Gcaud2170.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=579bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:7584..8319- (Gracilaria caudata M_176_S67 male)
ATGCAGCTAGCAATATTGCCACTGGGGTCGACAGAATCACATGGTCCTCA
TCTTCCGCTCGGCACAGACGCAATCCAGGAATCAGAACTCGAGGATAAAG
CCACTGAAGGGCTGCTGGACATTGCCACTCTACCACTAGGCTCTTTTGGG
GCCAGTTTCGAGCATACCGGGTTCCCCGCCGTCAGTTTCAATGTTCAAGC
AATGCTGGCTAAAGCCTACGGTGAGCTTGTTGACAGGAATTTGAGTTCAG
ATGAAATACTAAACGGCATTCATGGAGGTTTGATTGAAACGTCTGTTATG
CTGCATTTGCATCCCGAATTAGTTCGGGTTGATCTTCTACGCGACTTCAG
GACGAGACCGGAACTTCACTCTCACCTGGAACCGTACGGAACCGTTGTGC
TTTATGGGTGGTATATGGAGGACCTTTGCAGGGATGGAGCGGTTGGGAAT
GCCGAAGCGTCAACCGTTGAGCTCCGTTCACAAATCTTTAAACGAAGCGT
GATGGAGCTAAGAGCGGTTATCGAAGACATGATAAAAAGTGATCTGAAGG
AACTTCTGGTGGTGAAAAGCAATAGTTAA
back to top