Gcaud1955.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1955.t1
Unique Name	Gcaud1955.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	230

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1304_length_11589_cov_5.861106	contig	NODE_1304_length_11589_cov_5.861106:3778..4467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705737.1
Max annot lvl	2759\|Eukaryota
Evalue	3.96e-41
EggNOG OGs	2DZIP@1\|root,2S72C@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1955	Gcaud1955	Gracilaria caudata M_176_S67 male	gene	NODE_1304_length_11589_cov_5.861106 3778..4467 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1955.t1.start1	Gcaud1955.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1304_length_11589_cov_5.861106 3778..3780 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1955.t1.CDS1	Gcaud1955.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1304_length_11589_cov_5.861106 3778..4467 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1955.t1.exon1	Gcaud1955.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1304_length_11589_cov_5.861106 3778..4467 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1955.t1.stop1	Gcaud1955.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1304_length_11589_cov_5.861106 4465..4467 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1955.t1	Gcaud1955.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1304_length_11589_cov_5.861106 3778..4467 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1304_length_11589_cov_5.861106:3778..4467+
coding sequence from alignment at NODE_1304_length_11589_cov_5.861106:3778..4467+

mRNA sequence

>Gcaud1955.t1 ID=Gcaud1955.t1|Name=Gcaud1955.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=230bp
MAKGEPATNLDLSYTSTAPSQFITPSEAAHHQVQPAISPFPTHSPSPPPP
AEDNRFVFLDKLPKVVWNVDPTIKLKLRKYFYPLGVTRLSLGADLDLRHK
KLSFKWSWRDRIIGGRLEFHEDKISLTKTFNIDTRTKLDVKAAFDIHSRK
TLFSLNVRPFLGILPYDRPPAGLSVRQKIPVDKRLQIEFQGRLSVPEAKI
SNDSVSAFSLGEGNFVFDLEELNFRFLVQ*

spliced messenger RNA

>Gcaud1955.t1 ID=Gcaud1955.t1|Name=Gcaud1955.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=690bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:3778..4467+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAAGGTGAGCCAGCTACCAATCTAGACTTGTCCTACACTTCCAC
AGCGCCCTCACAATTTATCACACCTTCCGAAGCTGCTCACCATCAAGTGC
AACCTGCTATCTCGCCGTTCCCAACACATTCACCATCTCCACCACCGCCT
GCCGAAGACAACCGCTTCGTCTTTCTTGATAAATTGCCCAAAGTAGTATG
GAACGTTGACCCGACCATCAAGCTCAAGCTTCGCAAATACTTTTATCCAC
TTGGCGTCACCAGACTCTCATTGGGCGCCGACCTCGACCTCCGACACAAG
AAGCTTTCGTTCAAATGGTCATGGCGCGACCGCATCATTGGCGGTCGTCT
AGAGTTCCATGAGGATAAAATCAGCCTCACCAAGACCTTCAACATCGATA
CTAGGACCAAGCTTGATGTAAAGGCTGCTTTTGATATTCACTCGCGCAAG
ACGCTGTTCTCACTTAATGTGCGACCGTTTCTTGGCATTCTCCCGTATGA
TCGACCGCCGGCGGGTCTGAGTGTGCGACAAAAGATTCCAGTTGACAAGC
GGCTGCAGATTGAATTTCAGGGACGACTAAGTGTCCCAGAAGCTAAGATT
TCCAACGACAGTGTGTCCGCCTTCTCTCTGGGCGAAGGCAATTTCGTATT
CGATCTGGAAGAGCTCAACTTTCGATTCTTAGTACAATGA

protein sequence of Gcaud1955.t1

>Gcaud1955.t1 ID=Gcaud1955.t1|Name=Gcaud1955.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=230bp
MAKGEPATNLDLSYTSTAPSQFITPSEAAHHQVQPAISPFPTHSPSPPPP
AEDNRFVFLDKLPKVVWNVDPTIKLKLRKYFYPLGVTRLSLGADLDLRHK
KLSFKWSWRDRIIGGRLEFHEDKISLTKTFNIDTRTKLDVKAAFDIHSRK
TLFSLNVRPFLGILPYDRPPAGLSVRQKIPVDKRLQIEFQGRLSVPEAKI
SNDSVSAFSLGEGNFVFDLEELNFRFLVQ*

mRNA from alignment at NODE_1304_length_11589_cov_5.861106:3778..4467+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1955.t1 ID=Gcaud1955.t1|Name=Gcaud1955.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=690bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:3778..4467+ (Gracilaria caudata M_176_S67 male)
ATGGCGAAAGGTGAGCCAGCTACCAATCTAGACTTGTCCTACACTTCCAC
AGCGCCCTCACAATTTATCACACCTTCCGAAGCTGCTCACCATCAAGTGC
AACCTGCTATCTCGCCGTTCCCAACACATTCACCATCTCCACCACCGCCT
GCCGAAGACAACCGCTTCGTCTTTCTTGATAAATTGCCCAAAGTAGTATG
GAACGTTGACCCGACCATCAAGCTCAAGCTTCGCAAATACTTTTATCCAC
TTGGCGTCACCAGACTCTCATTGGGCGCCGACCTCGACCTCCGACACAAG
AAGCTTTCGTTCAAATGGTCATGGCGCGACCGCATCATTGGCGGTCGTCT
AGAGTTCCATGAGGATAAAATCAGCCTCACCAAGACCTTCAACATCGATA
CTAGGACCAAGCTTGATGTAAAGGCTGCTTTTGATATTCACTCGCGCAAG
ACGCTGTTCTCACTTAATGTGCGACCGTTTCTTGGCATTCTCCCGTATGA
TCGACCGCCGGCGGGTCTGAGTGTGCGACAAAAGATTCCAGTTGACAAGC
GGCTGCAGATTGAATTTCAGGGACGACTAAGTGTCCCAGAAGCTAAGATT
TCCAACGACAGTGTGTCCGCCTTCTCTCTGGGCGAAGGCAATTTCGTATT
CGATCTGGAAGAGCTCAACTTTCGATTCTTAGTACAATGA

Coding sequence (CDS) from alignment at NODE_1304_length_11589_cov_5.861106:3778..4467+

>Gcaud1955.t1 ID=Gcaud1955.t1|Name=Gcaud1955.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=690bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:3778..4467+ (Gracilaria caudata M_176_S67 male)
ATGGCGAAAGGTGAGCCAGCTACCAATCTAGACTTGTCCTACACTTCCAC
AGCGCCCTCACAATTTATCACACCTTCCGAAGCTGCTCACCATCAAGTGC
AACCTGCTATCTCGCCGTTCCCAACACATTCACCATCTCCACCACCGCCT
GCCGAAGACAACCGCTTCGTCTTTCTTGATAAATTGCCCAAAGTAGTATG
GAACGTTGACCCGACCATCAAGCTCAAGCTTCGCAAATACTTTTATCCAC
TTGGCGTCACCAGACTCTCATTGGGCGCCGACCTCGACCTCCGACACAAG
AAGCTTTCGTTCAAATGGTCATGGCGCGACCGCATCATTGGCGGTCGTCT
AGAGTTCCATGAGGATAAAATCAGCCTCACCAAGACCTTCAACATCGATA
CTAGGACCAAGCTTGATGTAAAGGCTGCTTTTGATATTCACTCGCGCAAG
ACGCTGTTCTCACTTAATGTGCGACCGTTTCTTGGCATTCTCCCGTATGA
TCGACCGCCGGCGGGTCTGAGTGTGCGACAAAAGATTCCAGTTGACAAGC
GGCTGCAGATTGAATTTCAGGGACGACTAAGTGTCCCAGAAGCTAAGATT
TCCAACGACAGTGTGTCCGCCTTCTCTCTGGGCGAAGGCAATTTCGTATT
CGATCTGGAAGAGCTCAACTTTCGATTCTTAGTACAATGA