Gcaud1957.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1957.t1
Unique NameGcaud1957.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length260
Homology
BLAST of Gcaud1957.t1 vs. uniprot
Match: A0A2V3J1K3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1K3_9FLOR)

HSP 1 Score: 308 bits (789), Expect = 8.360e-103
Identity = 141/258 (54.65%), Postives = 189/258 (73.26%), Query Frame = 0
Query:    2 MCKIETCSRAIPVNGTLPTSLELGGTASCVMSDMIQCVKRMDNVAAAASTTETVEPVQYRQVQFGQASASHMFNVTSFVDSNNVILPEKDMHKQWPDHERLRNRFIHVRVYENAERSETFLCAIYNGYTWPSDGLGNGATSVQIEGLSGQTLSWRACDDSSECTGAPAPTLSAQHVYVDNLSDGWCVSPLERNGNGIRVAFSEVNGMYGIEFQSLESETEYLWADPPQYGMIGGVDSNGFSVGGSASFIINLNGIPLP 259
            MC IE+CS  +  +G+L +SL++G TASCV+S  +QCV+ + ++    + T++  P ++RQVQFGQ S SHMFN+++FVD+ N +  +  +H  WP   RL NRFIH+R+YENA R++T+LCAIYNGYT P DG   G   V+IEGL GQ LSW ACDDS+ECTG P+ TL+A+H ++D+ +DGWCV P+E NGN IRV FS V GM G+E Q+   +  Y W +PPQYGM G VD++G SVGGSAS I+NL GIP+P
Sbjct:    1 MCSIESCSHNVAADGSLSSSLQIGSTASCVLSQNVQCVRLVGDLFF--NNTQST-PAEFRQVQFGQPSVSHMFNLSTFVDTGNQLRIDNSLHDAWPTETRLTNRFIHIRLYENAARNDTYLCAIYNGYTVPPDGRRRGFIDVEIEGLGGQNLSWVACDDSAECTGGPSSTLTAEHTFLDHATDGWCVGPVENNGNAIRVTFSNVEGMLGLELQAPGFQQTYRWTEPPQYGMAGAVDADGLSVGGSASLIVNLAGIPVP 255          
BLAST of Gcaud1957.t1 vs. uniprot
Match: A0A2V3J4H0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4H0_9FLOR)

HSP 1 Score: 281 bits (718), Expect = 2.040e-92
Identity = 134/228 (58.77%), Postives = 165/228 (72.37%), Query Frame = 0
Query:   32 MSDMIQCVKRMDNVAAAASTTETVEPVQYRQVQFGQASASHMFNVTSFVDSNNVILPEKDMHKQWPDHERLRNRFIHVRVYENAERSETFLCAIYNGYTWPSDGLGNGATSVQIEGLSGQTLSWRACDDSSECTGAPAPTLSAQHVYVDNLSDGWCVSPLERNGNGIRVAFSEVNGMYGIEFQSLESETEYLWADPPQYGMIGGVDSNGFSVGGSASFIINLNGIPLP 259
            MS  IQCV+R+  V       +   P +YRQ+QFGQ S SHM+N+T+FVD+ NVI  +  MH  WP + RLRNRFIH+R+YEN  R+ET+LCAIYN Y  PSDG  +G+  VQIEG++GQ LSW ACDD  ECTG P+ TLSA H + DN++DGWC+SPLE NGN +RV FS V  M+GIE QS  S+ EYLW +P Q+GM G  DSNGFSV G+ASF IN  GIP+P
Sbjct:    1 MSQNIQCVRRVGEVPVENFPPQ---PTEYRQLQFGQPSISHMYNLTAFVDTENVITIQSSMHGTWPSYLRLRNRFIHIRLYENQARNETYLCAIYNAYHLPSDGKRSGSVDVQIEGIAGQNLSWVACDDLGECTGGPSSTLSATHSFDDNVTDGWCISPLESNGNSVRVTFSNVEAMFGIEIQSPGSQFEYLWGEPLQHGMTGIADSNGFSVAGTASFTINPAGIPVP 225          
The following BLAST results are available for this feature:
BLAST of Gcaud1957.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1K3_9FLOR8.360e-10354.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J4H0_9FLOR2.040e-9258.77Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1304_length_11589_cov_5.861106contigNODE_1304_length_11589_cov_5.861106:7067..7846 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1957.t1Gcaud1957.t1Gracilaria caudata M_176_S67 malemRNANODE_1304_length_11589_cov_5.861106 7067..7846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1957.t1 ID=Gcaud1957.t1|Name=Gcaud1957.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=260bp
MMCKIETCSRAIPVNGTLPTSLELGGTASCVMSDMIQCVKRMDNVAAAAS
TTETVEPVQYRQVQFGQASASHMFNVTSFVDSNNVILPEKDMHKQWPDHE
RLRNRFIHVRVYENAERSETFLCAIYNGYTWPSDGLGNGATSVQIEGLSG
QTLSWRACDDSSECTGAPAPTLSAQHVYVDNLSDGWCVSPLERNGNGIRV
AFSEVNGMYGIEFQSLESETEYLWADPPQYGMIGGVDSNGFSVGGSASFI
INLNGIPLP*
back to top