Gcaud1954.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1954.t1
Unique Name	Gcaud1954.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	421

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1304_length_11589_cov_5.861106	contig	NODE_1304_length_11589_cov_5.861106:1434..2696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1954	Gcaud1954	Gracilaria caudata M_176_S67 male	gene	NODE_1304_length_11589_cov_5.861106 1434..2696 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1954.t1.start1	Gcaud1954.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1304_length_11589_cov_5.861106 1434..1436 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1954.t1.CDS1	Gcaud1954.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1304_length_11589_cov_5.861106 1434..2696 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1954.t1.exon1	Gcaud1954.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1304_length_11589_cov_5.861106 1434..2696 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1954.t1.stop1	Gcaud1954.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1304_length_11589_cov_5.861106 2694..2696 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1954.t1	Gcaud1954.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1304_length_11589_cov_5.861106 1434..2696 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1304_length_11589_cov_5.861106:1434..2696+
coding sequence from alignment at NODE_1304_length_11589_cov_5.861106:1434..2696+

mRNA sequence

>Gcaud1954.t1 ID=Gcaud1954.t1|Name=Gcaud1954.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=421bp
MLAYDARAIPLPPLRRIHRAPTRHTVIHLVRSPDVNLSSTNLILIARTDA
CSIPLIVSAIRRYLLPTRTRRIHDVSHPLQLLYKLVLCVPYFYRYIASPA
FFRQFWRLGTDVDASSSTLSAPLLLAAWARDLRKMARRNDPAATFWYVTA
RNMSKEQRLPRVPHKSFVYPVTTNILNRIAAPLTFLTHDETKRTLRLINQ
MNNGSNARWRRASRFVSSLSTSSSLSRLSSTSMCVHIPNTQQCVSVPTPA
PPARRACQEMSDKFLAVKRRHDQVACMRSRHADDLLLSDTSLATLGATSH
SSGVLRLSEKLKLCCDGGNCCVCVDEYFLDERHGITPSSFADLFVDGPLE
RRGAEEKIERQVLEAVESVGNTIKLPSNVDLEALHAKFRQAAAAATAKRS
RGAFRASRRNSSLLGKVSGR*

spliced messenger RNA

>Gcaud1954.t1 ID=Gcaud1954.t1|Name=Gcaud1954.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:1434..2696+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCTTATGATGCGCGCGCTATTCCATTGCCGCCTCTTCGTCGCAT
ACATCGCGCCCCCACGCGCCATACCGTCATTCACCTAGTGCGTTCACCGG
ACGTAAACCTATCGTCTACCAATCTCATCCTCATCGCCAGGACCGACGCG
TGTTCAATCCCATTAATCGTCAGTGCAATCCGTCGCTACTTACTTCCCAC
TCGTACTAGAAGGATTCATGATGTGTCCCACCCCCTGCAACTTCTATACA
AACTTGTATTATGCGTGCCCTACTTCTATCGCTACATTGCTTCTCCGGCG
TTTTTCAGACAGTTTTGGCGCCTCGGCACGGACGTGGACGCATCGTCTTC
CACCCTTTCTGCACCGCTTTTGCTCGCCGCGTGGGCGCGTGATTTGCGGA
AGATGGCGAGGAGAAATGACCCTGCTGCCACTTTCTGGTACGTGACGGCG
AGAAATATGTCCAAGGAACAACGCCTGCCCCGTGTACCTCACAAGTCGTT
TGTGTATCCCGTCACGACCAACATTCTCAACCGTATTGCTGCGCCGTTGA
CATTTCTCACCCACGATGAGACGAAGCGAACTTTGCGCTTGATAAATCAG
ATGAACAATGGATCGAACGCGCGTTGGAGACGCGCTAGTCGGTTTGTTTC
ATCTCTATCTACCTCTTCTTCGCTATCTAGATTGTCATCAACGTCAATGT
GCGTGCACATTCCGAACACTCAACAGTGCGTATCCGTTCCCACTCCTGCG
CCGCCGGCTAGAAGGGCTTGCCAGGAAATGAGTGACAAGTTTTTAGCGGT
GAAGAGGAGGCATGACCAAGTGGCGTGCATGCGATCACGGCATGCTGATG
ATTTACTACTGAGTGATACGAGCTTGGCAACATTGGGAGCCACTTCACAC
TCTTCTGGCGTGCTGAGGTTATCGGAGAAGTTGAAACTGTGTTGTGATGG
CGGGAATTGTTGTGTTTGTGTGGACGAATACTTTTTGGACGAGAGACATG
GCATCACTCCCAGCTCGTTCGCAGACTTATTTGTGGACGGCCCACTTGAG
CGCCGAGGGGCGGAGGAAAAGATTGAGAGACAGGTTCTGGAAGCGGTTGA
GAGTGTGGGCAACACTATCAAGCTGCCCAGTAATGTGGATCTAGAAGCGT
TGCACGCGAAGTTTCGTCAGGCGGCCGCGGCAGCTACCGCGAAAAGAAGC
AGGGGTGCTTTCAGGGCGTCGAGGAGAAACTCCTCGCTTCTTGGTAAGGT
TAGTGGTAGATAA

protein sequence of Gcaud1954.t1

>Gcaud1954.t1 ID=Gcaud1954.t1|Name=Gcaud1954.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=421bp
MLAYDARAIPLPPLRRIHRAPTRHTVIHLVRSPDVNLSSTNLILIARTDA
CSIPLIVSAIRRYLLPTRTRRIHDVSHPLQLLYKLVLCVPYFYRYIASPA
FFRQFWRLGTDVDASSSTLSAPLLLAAWARDLRKMARRNDPAATFWYVTA
RNMSKEQRLPRVPHKSFVYPVTTNILNRIAAPLTFLTHDETKRTLRLINQ
MNNGSNARWRRASRFVSSLSTSSSLSRLSSTSMCVHIPNTQQCVSVPTPA
PPARRACQEMSDKFLAVKRRHDQVACMRSRHADDLLLSDTSLATLGATSH
SSGVLRLSEKLKLCCDGGNCCVCVDEYFLDERHGITPSSFADLFVDGPLE
RRGAEEKIERQVLEAVESVGNTIKLPSNVDLEALHAKFRQAAAAATAKRS
RGAFRASRRNSSLLGKVSGR*

mRNA from alignment at NODE_1304_length_11589_cov_5.861106:1434..2696+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1954.t1 ID=Gcaud1954.t1|Name=Gcaud1954.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:1434..2696+ (Gracilaria caudata M_176_S67 male)
ATGTTGGCTTATGATGCGCGCGCTATTCCATTGCCGCCTCTTCGTCGCAT
ACATCGCGCCCCCACGCGCCATACCGTCATTCACCTAGTGCGTTCACCGG
ACGTAAACCTATCGTCTACCAATCTCATCCTCATCGCCAGGACCGACGCG
TGTTCAATCCCATTAATCGTCAGTGCAATCCGTCGCTACTTACTTCCCAC
TCGTACTAGAAGGATTCATGATGTGTCCCACCCCCTGCAACTTCTATACA
AACTTGTATTATGCGTGCCCTACTTCTATCGCTACATTGCTTCTCCGGCG
TTTTTCAGACAGTTTTGGCGCCTCGGCACGGACGTGGACGCATCGTCTTC
CACCCTTTCTGCACCGCTTTTGCTCGCCGCGTGGGCGCGTGATTTGCGGA
AGATGGCGAGGAGAAATGACCCTGCTGCCACTTTCTGGTACGTGACGGCG
AGAAATATGTCCAAGGAACAACGCCTGCCCCGTGTACCTCACAAGTCGTT
TGTGTATCCCGTCACGACCAACATTCTCAACCGTATTGCTGCGCCGTTGA
CATTTCTCACCCACGATGAGACGAAGCGAACTTTGCGCTTGATAAATCAG
ATGAACAATGGATCGAACGCGCGTTGGAGACGCGCTAGTCGGTTTGTTTC
ATCTCTATCTACCTCTTCTTCGCTATCTAGATTGTCATCAACGTCAATGT
GCGTGCACATTCCGAACACTCAACAGTGCGTATCCGTTCCCACTCCTGCG
CCGCCGGCTAGAAGGGCTTGCCAGGAAATGAGTGACAAGTTTTTAGCGGT
GAAGAGGAGGCATGACCAAGTGGCGTGCATGCGATCACGGCATGCTGATG
ATTTACTACTGAGTGATACGAGCTTGGCAACATTGGGAGCCACTTCACAC
TCTTCTGGCGTGCTGAGGTTATCGGAGAAGTTGAAACTGTGTTGTGATGG
CGGGAATTGTTGTGTTTGTGTGGACGAATACTTTTTGGACGAGAGACATG
GCATCACTCCCAGCTCGTTCGCAGACTTATTTGTGGACGGCCCACTTGAG
CGCCGAGGGGCGGAGGAAAAGATTGAGAGACAGGTTCTGGAAGCGGTTGA
GAGTGTGGGCAACACTATCAAGCTGCCCAGTAATGTGGATCTAGAAGCGT
TGCACGCGAAGTTTCGTCAGGCGGCCGCGGCAGCTACCGCGAAAAGAAGC
AGGGGTGCTTTCAGGGCGTCGAGGAGAAACTCCTCGCTTCTTGGTAAGGT
TAGTGGTAGATAA

Coding sequence (CDS) from alignment at NODE_1304_length_11589_cov_5.861106:1434..2696+

>Gcaud1954.t1 ID=Gcaud1954.t1|Name=Gcaud1954.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1263bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:1434..2696+ (Gracilaria caudata M_176_S67 male)
ATGTTGGCTTATGATGCGCGCGCTATTCCATTGCCGCCTCTTCGTCGCAT
ACATCGCGCCCCCACGCGCCATACCGTCATTCACCTAGTGCGTTCACCGG
ACGTAAACCTATCGTCTACCAATCTCATCCTCATCGCCAGGACCGACGCG
TGTTCAATCCCATTAATCGTCAGTGCAATCCGTCGCTACTTACTTCCCAC
TCGTACTAGAAGGATTCATGATGTGTCCCACCCCCTGCAACTTCTATACA
AACTTGTATTATGCGTGCCCTACTTCTATCGCTACATTGCTTCTCCGGCG
TTTTTCAGACAGTTTTGGCGCCTCGGCACGGACGTGGACGCATCGTCTTC
CACCCTTTCTGCACCGCTTTTGCTCGCCGCGTGGGCGCGTGATTTGCGGA
AGATGGCGAGGAGAAATGACCCTGCTGCCACTTTCTGGTACGTGACGGCG
AGAAATATGTCCAAGGAACAACGCCTGCCCCGTGTACCTCACAAGTCGTT
TGTGTATCCCGTCACGACCAACATTCTCAACCGTATTGCTGCGCCGTTGA
CATTTCTCACCCACGATGAGACGAAGCGAACTTTGCGCTTGATAAATCAG
ATGAACAATGGATCGAACGCGCGTTGGAGACGCGCTAGTCGGTTTGTTTC
ATCTCTATCTACCTCTTCTTCGCTATCTAGATTGTCATCAACGTCAATGT
GCGTGCACATTCCGAACACTCAACAGTGCGTATCCGTTCCCACTCCTGCG
CCGCCGGCTAGAAGGGCTTGCCAGGAAATGAGTGACAAGTTTTTAGCGGT
GAAGAGGAGGCATGACCAAGTGGCGTGCATGCGATCACGGCATGCTGATG
ATTTACTACTGAGTGATACGAGCTTGGCAACATTGGGAGCCACTTCACAC
TCTTCTGGCGTGCTGAGGTTATCGGAGAAGTTGAAACTGTGTTGTGATGG
CGGGAATTGTTGTGTTTGTGTGGACGAATACTTTTTGGACGAGAGACATG
GCATCACTCCCAGCTCGTTCGCAGACTTATTTGTGGACGGCCCACTTGAG
CGCCGAGGGGCGGAGGAAAAGATTGAGAGACAGGTTCTGGAAGCGGTTGA
GAGTGTGGGCAACACTATCAAGCTGCCCAGTAATGTGGATCTAGAAGCGT
TGCACGCGAAGTTTCGTCAGGCGGCCGCGGCAGCTACCGCGAAAAGAAGC
AGGGGTGCTTTCAGGGCGTCGAGGAGAAACTCCTCGCTTCTTGGTAAGGT
TAGTGGTAGATAA