Gcaud2682.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2682.t1
Unique NameGcaud2682.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12_length_86746_cov_4.301944contigNODE_12_length_86746_cov_4.301944:704..961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN320CT
Preferred nameNDUFS6
PFAMszf-CHCC
Max annot lvl2759|Eukaryota
KEGG koko:K03939
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006082,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006936,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0008137,GO:0008150,GO:0008152,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009653,GO:0009987,GO:0010257,GO:0010259,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032787,GO:0032981,GO:0032989,GO:0032990,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0035264,GO:0040007,GO:0042221,GO:0042493,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0050136,GO:0050896,GO:0055086,GO:0055114,GO:0061458,GO:0065003,GO:0070469,GO:0070584,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue1.26e-19
EggNOG OGsKOG3456@1|root,KOG3456@2759|Eukaryota
Descriptionmitochondrial electron transport, NADH to ubiquinone
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2682Gcaud2682Gracilaria caudata M_176_S67 malegeneNODE_12_length_86746_cov_4.301944 704..961 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2682.t1.start1Gcaud2682.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_12_length_86746_cov_4.301944 704..706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2682.t1.CDS1Gcaud2682.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 704..961 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2682.t1.exon1Gcaud2682.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 704..961 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2682.t1.stop1Gcaud2682.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_12_length_86746_cov_4.301944 959..961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2682.t1Gcaud2682.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_12_length_86746_cov_4.301944 704..961 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2682.t1 ID=Gcaud2682.t1|Name=Gcaud2682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=86bp
MHLPLGAVPADTDLEGVRSKWGSDAMEKIQSTRVIEVDGDVAICDGGGGP
LGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRKKSH*
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spliced messenger RNA

>Gcaud2682.t1 ID=Gcaud2682.t1|Name=Gcaud2682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:704..961+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcaccttccactgggggccgtgcccgccgataccgaccttgagggcgt
ccgatccaagtggggctccgacgccatggaaaagatccagagcacgcgtg
tcatcgaggttgacggcgatgTCGCCATTTGCGACGGCGGTGGTGGTCCC
CTGGGGCATCCGATCGAGTACATCAAACTGTACGTCTCCGATGAGGACGC
CGGCCCGCAGGTGTGCAAGTACTGCGGACTCAGGTTTGTGCGAAAGAAGA
GTCATTAG
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protein sequence of Gcaud2682.t1

>Gcaud2682.t1 ID=Gcaud2682.t1|Name=Gcaud2682.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=86bp
MHLPLGAVPADTDLEGVRSKWGSDAMEKIQSTRVIEVDGDVAICDGGGGP
LGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRKKSH*
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mRNA from alignment at NODE_12_length_86746_cov_4.301944:704..961+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2682.t1 ID=Gcaud2682.t1|Name=Gcaud2682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:704..961+ (Gracilaria caudata M_176_S67 male)
atgcaccttccactgggggccgtgcccgccgataccgaccttgagggcgt
ccgatccaagtggggctccgacgccatggaaaagatccagagcacgcgtg
tcatcgaggttgacggcgatgTCGCCATTTGCGACGGCGGTGGTGGTCCC
CTGGGGCATCCGATCGAGTACATCAAACTGTACGTCTCCGATGAGGACGC
CGGCCCGCAGGTGTGCAAGTACTGCGGACTCAGGTTTGTGCGAAAGAAGA
GTCATTAG
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Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:704..961+

>Gcaud2682.t1 ID=Gcaud2682.t1|Name=Gcaud2682.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=258bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:704..961+ (Gracilaria caudata M_176_S67 male)
atgcaccttccactgggggccgtgcccgccgataccgaccttgagggcgt
ccgatccaagtggggctccgacgccatggaaaagatccagagcacgcgtg
tcatcgaggttgacggcgatgTCGCCATTTGCGACGGCGGTGGTGGTCCC
CTGGGGCATCCGATCGAGTACATCAAACTGTACGTCTCCGATGAGGACGC
CGGCCCGCAGGTGTGCAAGTACTGCGGACTCAGGTTTGTGCGAAAGAAGA
GTCATTAG
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