Gcaud2682.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2682.t1
Unique NameGcaud2682.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length86
Homology
BLAST of Gcaud2682.t1 vs. uniprot
Match: A0A2V3IPR5_9FLOR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPR5_9FLOR)

HSP 1 Score: 150 bits (378), Expect = 2.300e-45
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 0
Query:    2 HLPLGAVPADTDLEGVRSKWGSDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRK 82
            HLPLG VP DTDL  VRSKWGSDAM+KIQ+T VIEVDGDVAIC+GGGG LGHPIEYIKL+VSDEDA PQVCKYCGL+FVRK
Sbjct:   27 HLPLGVVPDDTDLGSVRSKWGSDAMDKIQNTDVIEVDGDVAICNGGGGALGHPIEYIKLHVSDEDAAPQVCKYCGLKFVRK 107          
BLAST of Gcaud2682.t1 vs. uniprot
Match: R7QQI5_CHOCR (NADH-ubiquinone oxidoreductase subunit iron-sulfur protein 6 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQI5_CHOCR)

HSP 1 Score: 142 bits (359), Expect = 1.920e-42
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 0
Query:    1 MHLPLGAVPADTDLEGVRSKWGSDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRK 82
            MH PLG+VPA TD E VRSKWGSDAM+KIQ T   EVDGDVA C+GGGG LGHPIEYIKL VSDEDAGPQVCKYCGL+F+RK
Sbjct:   28 MHQPLGSVPAGTDPELVRSKWGSDAMDKIQETAATEVDGDVAACNGGGGALGHPIEYIKLLVSDEDAGPQVCKYCGLKFLRK 109          
BLAST of Gcaud2682.t1 vs. uniprot
Match: A0A485KN93_9STRA (Aste57867_9463 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KN93_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.020e-17
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = 0
Query:   23 SDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKL-YVSDEDAGPQVCKYCGLRFVRKKSH 85
            SDA  +I    VIEVD D A+CDGGGG LGHP+EYI L  VSDE   PQ CKYCGLRF  K  H
Sbjct:   58 SDAEIRIAQVPVIEVDSDTAVCDGGGGALGHPLEYIALNIVSDE---PQTCKYCGLRFKMKHHH 118          
BLAST of Gcaud2682.t1 vs. uniprot
Match: W4FPE3_9STRA (zf-CHCC domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPE3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.370e-17
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0
Query:   23 SDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKL-YVSDEDAGPQVCKYCGLRFVRKKSH 85
            SDA  +I    V+EVD DVA+CDGGGG LGHP+EYI L  VSD+   PQ CKYCGLR+ +K  H
Sbjct:   56 SDAELRIAQVPVVEVDSDVAVCDGGGGALGHPVEYIALNIVSDK---PQTCKYCGLRYKQKHHH 116          
BLAST of Gcaud2682.t1 vs. uniprot
Match: A0A6G0WCA7_9STRA (zf-CHCC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCA7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.710e-17
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 0
Query:   23 SDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRKKSH 85
            SDA  +I    V+EVD DVA+CDGGGG LGHP+EYI+L    ++  PQ CKYCGLR+  K  H
Sbjct:   51 SDAELRIAKVPVVEVDTDVAVCDGGGGALGHPLEYIQLNTVSKE--PQTCKYCGLRYKMKHHH 111          
BLAST of Gcaud2682.t1 vs. uniprot
Match: A0A024TS26_9STRA (zf-CHCC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TS26_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.110e-16
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0
Query:   23 SDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKLY-VSDEDAGPQVCKYCGLRFVRKKSH 85
            SDA   I    V+EVD DVA+CDGGGG LGHP+EYI L  VSD+   PQ CKYCGLR+ +K  H
Sbjct:   55 SDAEILIAQVPVVEVDSDVAVCDGGGGALGHPLEYIALNTVSDK---PQTCKYCGLRYKQKPHH 115          
BLAST of Gcaud2682.t1 vs. uniprot
Match: A0A7S2X4R7_PROMC (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2X4R7_PROMC)

HSP 1 Score: 76.3 bits (186), Expect = 6.350e-16
Identity = 39/65 (60.00%), Postives = 43/65 (66.15%), Query Frame = 0
Query:   19 SKWGSDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRKK 83
            +K  SDA   I  T V  VDG VA+CDGGGG LGHPIEYIKL     D  P  CKYCGLR++ KK
Sbjct:   67 AKHRSDAENLIAQTDVTVVDGPVALCDGGGGSLGHPIEYIKLDNRTPDI-PTECKYCGLRYIMKK 130          
BLAST of Gcaud2682.t1 vs. uniprot
Match: A0A484EAT9_BRELC (zf-CHCC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAT9_BRELC)

HSP 1 Score: 75.5 bits (184), Expect = 8.980e-16
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 0
Query:   23 SDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRK 82
            SDA ++I    ++EV G +A+CDGGGG LGHP+EYI+L    ++  PQ CKYCG+R++ K
Sbjct:   52 SDAEQRIAQVPIVEVAGSIAVCDGGGGALGHPVEYIQLDTRKQNT-PQTCKYCGIRYMMK 110          
BLAST of Gcaud2682.t1 vs. uniprot
Match: A0A0P1AD53_PLAHL (NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AD53_PLAHL)

HSP 1 Score: 74.3 bits (181), Expect = 2.620e-15
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 0
Query:   23 SDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRKKSH 85
            SDA ++I    ++E+  +VA+CDGGGG LGHP+EYI+L   + +  PQ CKYCG+RF  K+ +
Sbjct:   53 SDAEQRIAQVPIVELASNVAVCDGGGGALGHPVEYIQLDTREHNT-PQTCKYCGIRFKMKEGY 114          
BLAST of Gcaud2682.t1 vs. uniprot
Match: A0A7S3JV71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV71_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.290e-15
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 0
Query:   23 SDAMEKIQSTRVIEVDGDVAICDGGGGPLGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRKKSH 85
            S+A E I     I+V GD+A+C+GGGG LGHP+EYI+L   D    P VC YCGLRF++  SH
Sbjct:   49 SNAEELINKVEPIKVKGDMAVCNGGGGALGHPLEYIQLNTVDPTK-PAVCLYCGLRFIKDTSH 110          
The following BLAST results are available for this feature:
BLAST of Gcaud2682.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPR5_9FLOR2.300e-4585.19NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
R7QQI5_CHOCR1.920e-4280.49NADH-ubiquinone oxidoreductase subunit iron-sulfur... [more]
A0A485KN93_9STRA1.020e-1764.06Aste57867_9463 protein n=1 Tax=Aphanomyces stellat... [more]
W4FPE3_9STRA1.370e-1760.94zf-CHCC domain-containing protein n=4 Tax=Aphanomy... [more]
A0A6G0WCA7_9STRA6.710e-1757.14zf-CHCC domain-containing protein n=1 Tax=Aphanomy... [more]
A0A024TS26_9STRA1.110e-1660.94zf-CHCC domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S2X4R7_PROMC6.350e-1660.00Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A484EAT9_BRELC8.980e-1651.67zf-CHCC domain-containing protein n=1 Tax=Bremia l... [more]
A0A0P1AD53_PLAHL2.620e-1549.21NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subu... [more]
A0A7S3JV71_9STRA4.290e-1553.97Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019401Zinc finger, CHCC-typePFAMPF10276zf-CHCCcoord: 40..79
e-value: 3.4E-14
score: 52.6
NoneNo IPR availableGENE3D2.60.260.40q5lls5 like domainscoord: 27..82
e-value: 1.4E-17
score: 65.1
NoneNo IPR availablePANTHERPTHR13156NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNITcoord: 24..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12_length_86746_cov_4.301944contigNODE_12_length_86746_cov_4.301944:704..961 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2682.t1Gcaud2682.t1Gracilaria caudata M_176_S67 malemRNANODE_12_length_86746_cov_4.301944 704..961 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2682.t1 ID=Gcaud2682.t1|Name=Gcaud2682.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=86bp
MHLPLGAVPADTDLEGVRSKWGSDAMEKIQSTRVIEVDGDVAICDGGGGP
LGHPIEYIKLYVSDEDAGPQVCKYCGLRFVRKKSH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019401Znf_CHCC