Gcaud1451.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1451.t1
Unique Name	Gcaud1451.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	475

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1295_length_11728_cov_4.118158	contig	NODE_1295_length_11728_cov_4.118158:3022..4446 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706511.1
PFAMs	SHMT
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00022,RC00112,RC01583,RC02958
KEGG ko	ko:K00600
KEGG Reaction	R00945,R09099
KEGG Pathway	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG Module	M00140,M00141,M00346,M00532
GOs	GO:0003674,GO:0003824,GO:0004372,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013
Evalue	4.09e-253
EggNOG OGs	COG0112@1\|root,KOG2467@2759\|Eukaryota
EC	2.1.2.1
Description	glycine hydroxymethyltransferase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1451	Gcaud1451	Gracilaria caudata M_176_S67 male	gene	NODE_1295_length_11728_cov_4.118158 3022..4446 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1451.t1.start1	Gcaud1451.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1295_length_11728_cov_4.118158 3022..3024 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1451.t1.CDS1	Gcaud1451.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1295_length_11728_cov_4.118158 3022..4446 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1451.t1.exon1	Gcaud1451.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1295_length_11728_cov_4.118158 3022..4446 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1451.t1.stop1	Gcaud1451.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1295_length_11728_cov_4.118158 4444..4446 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1451.t1	Gcaud1451.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1295_length_11728_cov_4.118158 3022..4446 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1295_length_11728_cov_4.118158:3022..4446+
coding sequence from alignment at NODE_1295_length_11728_cov_4.118158:3022..4446+

mRNA sequence

>Gcaud1451.t1 ID=Gcaud1451.t1|Name=Gcaud1451.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MAECYVNGHYNDAFAGFDGNRPVDQVDPELYELLRREKQRQYEGVELIAS
ENFTSRAVMEVLGSSLTNKYSEGLPGARYYGGNEVIDDIERLVQKRALEC
FGLDPAAWGVNVQPYSGSTANFALYTAVLNPHDRIMGLDLPSGGHLTHGF
YTAKRKISATSVYFESLPYKVDEKTGYIDYDKLEESALLFRPKMLICGAS
AYPRDWDFDRLRKIADKCGALLMCDMAHISGLVATGHASSPFKLCDFVTS
TTHKSLRGPRQGLIFYRRGPILDADGNHTGNEYKWESKVNMAVFPGCQGG
PHNNTIGALAVALKEAMQPDFKQYCKQVCANARTLGEQLVKKGYSLVTGG
TENHLVLWDLRPHGVGGSKVEKVCDLAHITLNKNAVAGDTSALNPGGVRI
GAPAMTSRGLVENDFVQIAEFLDRAVTLAISIQKETGTKMKDFTPAAEKD
PGVKALREEVIEFSKAFPMPGGIL*

spliced messenger RNA

>Gcaud1451.t1 ID=Gcaud1451.t1|Name=Gcaud1451.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:3022..4446+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGTGCTACGTGAACGGCCATTACAACGACGCTTTTGCCGGCTT
TGACGGCAATCGTCCCGTGGACCAAGTCGATCCGGAGCTGTACGAGCTTC
TTCGCCGCGAGAAGCAGCGCCAGTATGAGGGTGTCGAGCTGATCGCCAGC
GAGAACTTTACGTCTCGCGCCGTCATGGAGGTGCTCGGCTCGTCGTTGAC
CAACAAGTACTCGGAGGGCCTTCCTGGTGCGCGTTACTACGGTGGAAACG
AAGTCATCGATGACATTGAACGTCTGGTGCAGAAGCGTGCACTCGAGTGC
TTTGGTTTGGATCCCGCTGCCTGGGGCGTCAACGTGCAGCCGTACTCCGG
CTCCACCGCCAACTTTGCGCTCTACACCGCCGTATTGAACCCGCACGACC
GTATCATGGGCCTTGATCTTCCGTCCGGCGGTCATCTCACGCACGGTTTC
TACACGGCGAAGAGAAAGATCTCGGCCACCAGTGTGTACTTTGAATCGCT
TCCGTACAAGGTGGATGAGAAGACTGGATACATTGACTACGACAAGCTGG
AGGAAAGTGCGCTGCTGTTCCGTCCCAAAATGCTCATCTGTGGCGCCAGC
GCGTATCCTCGCGACTGGGACTTTGATCGTCTGCGCAAGATTGCAGACAA
GTGTGGCGCACTGCTCATGTGCGACATGGCTCATATCTCCGGCCTGGTGG
CCACTGGACATGCGTCCAGCCCGTTCAAGTTGTGTGACTTTGTGACGTCC
ACCACGCACAAGAGCTTGCGCGGTCCGCGCCAAGGTCTGATCTTCTACCG
TCGCGGGCCCATTCTGGATGCGGACGGCAACCACACTGGAAACGAGTACA
AATGGGAGAGCAAGGTGAACATGGCCGTGTTCCCGGGCTGCCAGGGCGGC
CCGCACAACAACACAATCGGCGCTCTGGCGGTGGCATTGAAGGAGGCCAT
GCAGCCGGATTTCAAGCAGTACTGCAAACAGGTGTGCGCCAACGCGCGCA
CGCTCGGGGAGCAGCTTGTGAAGAAGGGATATTCGCTGGTGACGGGCGGC
ACGGAGAACCACCTGGTGCTGTGGGATCTCCGCCCGCACGGCGTGGGCGG
CTCCAAGGTGGAGAAGGTGTGCGACCTTGCCCACATCACGCTGAACAAGA
ACGCGGTGGCCGGCGACACGTCGGCGTTGAACCCCGGAGGCGTGCGCATC
GGCGCGCCCGCGATGACGTCGCGCGGGCTGGTGGAGAACGACTTTGTGCA
GATCGCGGAGTTTCTGGACAGGGCGGTGACGCTGGCGATCAGCATCCAGA
AGGAGACTGGCACGAAGATGAAGGACTTTACGCCGGCGGCCGAGAAGGAC
CCGGGCGTGAAGGCGCTTCGTGAGGAGGTGATTGAGTTTTCCAAGGCGTT
CCCGATGCCCGGTGGAATTCTCTAG

protein sequence of Gcaud1451.t1

>Gcaud1451.t1 ID=Gcaud1451.t1|Name=Gcaud1451.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MAECYVNGHYNDAFAGFDGNRPVDQVDPELYELLRREKQRQYEGVELIAS
ENFTSRAVMEVLGSSLTNKYSEGLPGARYYGGNEVIDDIERLVQKRALEC
FGLDPAAWGVNVQPYSGSTANFALYTAVLNPHDRIMGLDLPSGGHLTHGF
YTAKRKISATSVYFESLPYKVDEKTGYIDYDKLEESALLFRPKMLICGAS
AYPRDWDFDRLRKIADKCGALLMCDMAHISGLVATGHASSPFKLCDFVTS
TTHKSLRGPRQGLIFYRRGPILDADGNHTGNEYKWESKVNMAVFPGCQGG
PHNNTIGALAVALKEAMQPDFKQYCKQVCANARTLGEQLVKKGYSLVTGG
TENHLVLWDLRPHGVGGSKVEKVCDLAHITLNKNAVAGDTSALNPGGVRI
GAPAMTSRGLVENDFVQIAEFLDRAVTLAISIQKETGTKMKDFTPAAEKD
PGVKALREEVIEFSKAFPMPGGIL*

mRNA from alignment at NODE_1295_length_11728_cov_4.118158:3022..4446+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1451.t1 ID=Gcaud1451.t1|Name=Gcaud1451.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:3022..4446+ (Gracilaria caudata M_176_S67 male)
ATGGCGGAGTGCTACGTGAACGGCCATTACAACGACGCTTTTGCCGGCTT
TGACGGCAATCGTCCCGTGGACCAAGTCGATCCGGAGCTGTACGAGCTTC
TTCGCCGCGAGAAGCAGCGCCAGTATGAGGGTGTCGAGCTGATCGCCAGC
GAGAACTTTACGTCTCGCGCCGTCATGGAGGTGCTCGGCTCGTCGTTGAC
CAACAAGTACTCGGAGGGCCTTCCTGGTGCGCGTTACTACGGTGGAAACG
AAGTCATCGATGACATTGAACGTCTGGTGCAGAAGCGTGCACTCGAGTGC
TTTGGTTTGGATCCCGCTGCCTGGGGCGTCAACGTGCAGCCGTACTCCGG
CTCCACCGCCAACTTTGCGCTCTACACCGCCGTATTGAACCCGCACGACC
GTATCATGGGCCTTGATCTTCCGTCCGGCGGTCATCTCACGCACGGTTTC
TACACGGCGAAGAGAAAGATCTCGGCCACCAGTGTGTACTTTGAATCGCT
TCCGTACAAGGTGGATGAGAAGACTGGATACATTGACTACGACAAGCTGG
AGGAAAGTGCGCTGCTGTTCCGTCCCAAAATGCTCATCTGTGGCGCCAGC
GCGTATCCTCGCGACTGGGACTTTGATCGTCTGCGCAAGATTGCAGACAA
GTGTGGCGCACTGCTCATGTGCGACATGGCTCATATCTCCGGCCTGGTGG
CCACTGGACATGCGTCCAGCCCGTTCAAGTTGTGTGACTTTGTGACGTCC
ACCACGCACAAGAGCTTGCGCGGTCCGCGCCAAGGTCTGATCTTCTACCG
TCGCGGGCCCATTCTGGATGCGGACGGCAACCACACTGGAAACGAGTACA
AATGGGAGAGCAAGGTGAACATGGCCGTGTTCCCGGGCTGCCAGGGCGGC
CCGCACAACAACACAATCGGCGCTCTGGCGGTGGCATTGAAGGAGGCCAT
GCAGCCGGATTTCAAGCAGTACTGCAAACAGGTGTGCGCCAACGCGCGCA
CGCTCGGGGAGCAGCTTGTGAAGAAGGGATATTCGCTGGTGACGGGCGGC
ACGGAGAACCACCTGGTGCTGTGGGATCTCCGCCCGCACGGCGTGGGCGG
CTCCAAGGTGGAGAAGGTGTGCGACCTTGCCCACATCACGCTGAACAAGA
ACGCGGTGGCCGGCGACACGTCGGCGTTGAACCCCGGAGGCGTGCGCATC
GGCGCGCCCGCGATGACGTCGCGCGGGCTGGTGGAGAACGACTTTGTGCA
GATCGCGGAGTTTCTGGACAGGGCGGTGACGCTGGCGATCAGCATCCAGA
AGGAGACTGGCACGAAGATGAAGGACTTTACGCCGGCGGCCGAGAAGGAC
CCGGGCGTGAAGGCGCTTCGTGAGGAGGTGATTGAGTTTTCCAAGGCGTT
CCCGATGCCCGGTGGAATTCTCTAG

Coding sequence (CDS) from alignment at NODE_1295_length_11728_cov_4.118158:3022..4446+

>Gcaud1451.t1 ID=Gcaud1451.t1|Name=Gcaud1451.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:3022..4446+ (Gracilaria caudata M_176_S67 male)
ATGGCGGAGTGCTACGTGAACGGCCATTACAACGACGCTTTTGCCGGCTT
TGACGGCAATCGTCCCGTGGACCAAGTCGATCCGGAGCTGTACGAGCTTC
TTCGCCGCGAGAAGCAGCGCCAGTATGAGGGTGTCGAGCTGATCGCCAGC
GAGAACTTTACGTCTCGCGCCGTCATGGAGGTGCTCGGCTCGTCGTTGAC
CAACAAGTACTCGGAGGGCCTTCCTGGTGCGCGTTACTACGGTGGAAACG
AAGTCATCGATGACATTGAACGTCTGGTGCAGAAGCGTGCACTCGAGTGC
TTTGGTTTGGATCCCGCTGCCTGGGGCGTCAACGTGCAGCCGTACTCCGG
CTCCACCGCCAACTTTGCGCTCTACACCGCCGTATTGAACCCGCACGACC
GTATCATGGGCCTTGATCTTCCGTCCGGCGGTCATCTCACGCACGGTTTC
TACACGGCGAAGAGAAAGATCTCGGCCACCAGTGTGTACTTTGAATCGCT
TCCGTACAAGGTGGATGAGAAGACTGGATACATTGACTACGACAAGCTGG
AGGAAAGTGCGCTGCTGTTCCGTCCCAAAATGCTCATCTGTGGCGCCAGC
GCGTATCCTCGCGACTGGGACTTTGATCGTCTGCGCAAGATTGCAGACAA
GTGTGGCGCACTGCTCATGTGCGACATGGCTCATATCTCCGGCCTGGTGG
CCACTGGACATGCGTCCAGCCCGTTCAAGTTGTGTGACTTTGTGACGTCC
ACCACGCACAAGAGCTTGCGCGGTCCGCGCCAAGGTCTGATCTTCTACCG
TCGCGGGCCCATTCTGGATGCGGACGGCAACCACACTGGAAACGAGTACA
AATGGGAGAGCAAGGTGAACATGGCCGTGTTCCCGGGCTGCCAGGGCGGC
CCGCACAACAACACAATCGGCGCTCTGGCGGTGGCATTGAAGGAGGCCAT
GCAGCCGGATTTCAAGCAGTACTGCAAACAGGTGTGCGCCAACGCGCGCA
CGCTCGGGGAGCAGCTTGTGAAGAAGGGATATTCGCTGGTGACGGGCGGC
ACGGAGAACCACCTGGTGCTGTGGGATCTCCGCCCGCACGGCGTGGGCGG
CTCCAAGGTGGAGAAGGTGTGCGACCTTGCCCACATCACGCTGAACAAGA
ACGCGGTGGCCGGCGACACGTCGGCGTTGAACCCCGGAGGCGTGCGCATC
GGCGCGCCCGCGATGACGTCGCGCGGGCTGGTGGAGAACGACTTTGTGCA
GATCGCGGAGTTTCTGGACAGGGCGGTGACGCTGGCGATCAGCATCCAGA
AGGAGACTGGCACGAAGATGAAGGACTTTACGCCGGCGGCCGAGAAGGAC
CCGGGCGTGAAGGCGCTTCGTGAGGAGGTGATTGAGTTTTCCAAGGCGTT
CCCGATGCCCGGTGGAATTCTCTAG