Gcaud7956.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7956.t1
Unique NameGcaud7956.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length407
Homology
BLAST of Gcaud7956.t1 vs. uniprot
Match: A0A2V3J1X8_9FLOR (PAPA-1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1X8_9FLOR)

HSP 1 Score: 409 bits (1050), Expect = 7.790e-138
Identity = 269/405 (66.42%), Postives = 300/405 (74.07%), Query Frame = 0
Query:    4 IESFSSDEVNKLPAVPRIRRSSGAKPPVPRGGRSGRKSGKRESTIAEKKPVVQSSRRRIGKRSPREEFLTSEDDGNDSSHFVVRRTSRRTQKTRKVIEDEDCE-------EDGEDAVNDSRDESS---GKEDNELGVEMTGEEXXXXXXXXXXXXXXXXXXXASRVK-RRNTIKESSSESKDGSRDYAGNENGDAHEDSNYFTNESGDGESGEIIKGHKDILAQLEADGN-NESEGFLSDSSEELKRTKSRRLTSRQRAMQGEDVKLEFTKLNSPKAKKKDIPQEDWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLTQNEMRDGCMRYVSNKNGSTLSIPKDTDVPPYLSKSLKASYPPVCKRDPKTGKRVL 396
            +ESFSSDEVNKLPAVPR+RRSSGAKPP PR  RS  KS KRES+IAEK+P+ QS+RRRI KRS RE+ + SE + ND SH VVRRTSRR QKTRKVIE            ED +D+     +ESS   G E            XXXXXXXXXXXXX      + R K RR TI+ESSS+ +  S             D     NES + E  EIIKG  DILAQLE +GN N+SE F S+SSEE+K  KSRRLTSRQRA+QGE+VKLE++KL SPK KKK++ QE+WDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRL QNEMRDGCMRYVSNKNG TLSIPKD   P YL +SLKA YPP C+RDPKTGKR+L
Sbjct:    1 MESFSSDEVNKLPAVPRVRRSSGAKPPAPRSSRSASKSSKRESSIAEKRPIRQSARRRISKRSFREDSVNSEYEDNDESHVVVRRTSRRIQKTRKVIEXXXXXXXXIVHTEDKDDSETKEENESSPGIGDEXXXXXXXXXXXXXXXXXXXXXXXXXKSASIYSRRAKKRRKTIRESSSDGRGNSXXXXXXXXXXXXXD---LGNESAEAEGVEIIKGQNDILAQLEEEGNDNDSEDFKSESSEEVKPMKSRRLTSRQRALQGENVKLEYSKLESPKTKKKEV-QEEWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLAQNEMRDGCMRYVSNKNGITLSIPKDASTPSYLGRSLKAVYPPKCERDPKTGKRLL 401          
BLAST of Gcaud7956.t1 vs. uniprot
Match: R7QG84_CHOCR (PAPA-1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG84_CHOCR)

HSP 1 Score: 206 bits (525), Expect = 2.770e-59
Identity = 121/196 (61.73%), Postives = 147/196 (75.00%), Query Frame = 0
Query:  206 IIKGHKDILAQLEA-----DGNNESEGFLSDSSEELKRTK-SRRLTSRQRAMQGEDVKLEFTKLNSPKAKKKDIPQEDWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLTQNEMRDGCMRYVSNKNGSTLSIPKDTDVPPYLSKSLKASYPPVCKRDPKTGKRV 395
            +  G   ILA+LE      DG   S+   SD S   K TK + RLT RQRAMQGE+VKLE+TKL SPKAKK   P+E W +DEE ELK+QQ+ARLRQM+ EKRN+EKRAAMVDKVLRGVTSKRKK T+A+E R A+V  RL++NEMR GC+R+VSN  G++LSIP++ D P YL +SLKA YP  C RDP+TGKR+
Sbjct:  186 VNAGRDKILAELEEAEAMDDG---SDPLDSDDSVVEKGTKKTERLTRRQRAMQGENVKLEYTKLESPKAKKAAPPEEAWSNDEEAELKKQQRARLRQMIHEKRNKEKRAAMVDKVLRGVTSKRKKLTMASEERVAKVGTRLSKNEMRKGCIRFVSNPTGTSLSIPEEDDAPAYLQESLKAVYPKPCLRDPRTGKRI 378          
BLAST of Gcaud7956.t1 vs. uniprot
Match: A0A1X6PFD6_PORUM (PAPA-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFD6_PORUM)

HSP 1 Score: 87.0 bits (214), Expect = 3.530e-15
Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 0
Query:  276 EDWDHD---EEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLTQNEMRDGCMRYVSNKNGSTLSIPKDTDVPPYLSKSLKASYPP-VCKRDPKTGKRV 395
            ED D D   EE  L+++Q ARLR++  EK+ +EKR A +++VLRGVT+KRKK   A+EA  A     L  N  R G +R++SN+ G +LS      +PP ++  L    PP  C  DPKTGKRV
Sbjct:  248 EDGDGDADAEEAVLRKEQVARLRRITHEKKRQEKRVATIERVLRGVTTKRKKAVAASEAVVADARDSLAVNRPRPGAVRHISNRGGESLSFVAGDALPPLVAVGLPRRAPPRPCTWDPKTGKRV 371          
BLAST of Gcaud7956.t1 vs. uniprot
Match: A0A7S0T9H4_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T9H4_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 1.040e-7
Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = 0
Query:  244 LTSRQRAMQGED----VKLEFTKLNSPKAKKKDIPQEDWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLTQNEMRDGCMRYVSNKNGSTLSIPKD---TDVPPYLSKSLK------ASYPPVCKRDPKTGKRVLPNGST 401
            +T+RQRAM G +    V L            K   + D +  E  E KR Q +RLR + SEK+ +E++ A ++KVLRG + ++++     E R  + E     + +     R  + K+GS L +  D       PYLS  LK         PPVC RDPKTGKR+LP  +T
Sbjct:   66 MTARQRAMAGHEAPELVDLSHFYATQGIGAGKQQRELDPERKERRERKRLQASRLRAINSEKKRQERQEATIEKVLRGASRRQRQ---GEETRKLRQEQASNVDTIAPRHARLWAQKDGSQLVVFPDYSEIQTDPYLSHFLKYETAPNVPRPPVCARDPKTGKRILPVTTT 233          
The following BLAST results are available for this feature:
BLAST of Gcaud7956.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J1X8_9FLOR7.790e-13866.42PAPA-1 domain-containing protein n=1 Tax=Gracilari... [more]
R7QG84_CHOCR2.770e-5961.73PAPA-1 domain-containing protein n=1 Tax=Chondrus ... [more]
A0A1X6PFD6_PORUM3.530e-1545.16PAPA-1 domain-containing protein n=1 Tax=Porphyra ... [more]
A0A7S0T9H4_9RHOD1.040e-734.50Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 284..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 383..406
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..217
NoneNo IPR availablePANTHERPTHR21561:SF12INO80 COMPLEX SUBUNIT Bcoord: 42..383
IPR006880INO80 complex subunit B-like conserved regionSMARTSM01406PAPA_1_2coord: 283..367
e-value: 2.4E-6
score: 37.1
IPR006880INO80 complex subunit B-like conserved regionPFAMPF04795PAPA-1coord: 283..366
e-value: 3.0E-12
score: 47.2
IPR029523INO80 complex, subunit Ies2PANTHERPTHR21561INO80 COMPLEX SUBUNIT Bcoord: 42..383

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1289_length_11770_cov_4.499786contigNODE_1289_length_11770_cov_4.499786:6753..7973 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7956.t1Gcaud7956.t1Gracilaria caudata M_176_S67 malemRNANODE_1289_length_11770_cov_4.499786 6753..7973 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7956.t1 ID=Gcaud7956.t1|Name=Gcaud7956.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=407bp
MPPIESFSSDEVNKLPAVPRIRRSSGAKPPVPRGGRSGRKSGKRESTIAE
KKPVVQSSRRRIGKRSPREEFLTSEDDGNDSSHFVVRRTSRRTQKTRKVI
EDEDCEEDGEDAVNDSRDESSGKEDNELGVEMTGEEEDDDLMDDDDDQSK
SASASASRVKRRNTIKESSSESKDGSRDYAGNENGDAHEDSNYFTNESGD
GESGEIIKGHKDILAQLEADGNNESEGFLSDSSEELKRTKSRRLTSRQRA
MQGEDVKLEFTKLNSPKAKKKDIPQEDWDHDEEMELKRQQKARLRQMVSE
KRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLTQNEMRDGCM
RYVSNKNGSTLSIPKDTDVPPYLSKSLKASYPPVCKRDPKTGKRVLPNGS
TLTATE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006880INO80B_C
IPR029523INO80B/Ies2