Gcaud7956.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7956.t1
Unique Name	Gcaud7956.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1289_length_11770_cov_4.499786	contig	NODE_1289_length_11770_cov_4.499786:6753..7973 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7956	Gcaud7956	Gracilaria caudata M_176_S67 male	gene	NODE_1289_length_11770_cov_4.499786 6753..7973 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7956.t1.stop1	Gcaud7956.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1289_length_11770_cov_4.499786 6753..6755 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7956.t1.CDS1	Gcaud7956.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1289_length_11770_cov_4.499786 6753..7973 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7956.t1.exon1	Gcaud7956.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1289_length_11770_cov_4.499786 6753..7973 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7956.t1.start1	Gcaud7956.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1289_length_11770_cov_4.499786 7971..7973 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7956.t1	Gcaud7956.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1289_length_11770_cov_4.499786 6753..7973 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1289_length_11770_cov_4.499786:6753..7973-
coding sequence from alignment at NODE_1289_length_11770_cov_4.499786:6753..7973-

mRNA sequence

>Gcaud7956.t1 ID=Gcaud7956.t1|Name=Gcaud7956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=407bp
MPPIESFSSDEVNKLPAVPRIRRSSGAKPPVPRGGRSGRKSGKRESTIAE
KKPVVQSSRRRIGKRSPREEFLTSEDDGNDSSHFVVRRTSRRTQKTRKVI
EDEDCEEDGEDAVNDSRDESSGKEDNELGVEMTGEEEDDDLMDDDDDQSK
SASASASRVKRRNTIKESSSESKDGSRDYAGNENGDAHEDSNYFTNESGD
GESGEIIKGHKDILAQLEADGNNESEGFLSDSSEELKRTKSRRLTSRQRA
MQGEDVKLEFTKLNSPKAKKKDIPQEDWDHDEEMELKRQQKARLRQMVSE
KRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLTQNEMRDGCM
RYVSNKNGSTLSIPKDTDVPPYLSKSLKASYPPVCKRDPKTGKRVLPNGS
TLTATE*

spliced messenger RNA

>Gcaud7956.t1 ID=Gcaud7956.t1|Name=Gcaud7956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at NODE_1289_length_11770_cov_4.499786:6753..7973- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGATAGAATCATTCAGCAGTGACGAAGTGAACAAGCTTCCTGC
CGTGCCGAGGATTCGTCGCAGCAGCGGCGCGAAACCCCCAGTTCCTCGTG
GTGGTCGGTCGGGCAGAAAGAGCGGTAAGCGTGAGTCAACGATTGCGGAG
AAAAAACCGGTTGTACAATCGTCGCGTCGGAGAATTGGGAAAAGGAGCCC
TCGAGAAGAATTCCTAACCAGTGAAGACGACGGCAATGACTCTTCGCACT
TTGTGGTTCGGCGCACGTCGCGCCGAACCCAGAAGACTCGAAAGGTCATT
GAAGATGAAGATTGTGAGGAAGATGGCGAGGACGCTGTAAATGACAGTCG
GGACGAATCATCTGGCAAGGAAGACAATGAACTGGGTGTAGAAATGACAG
GAGAGGAGGAGGACGACGATTTGATGGACGACGATGATGACCAGTCCAAG
AGTGCTTCTGCATCTGCTTCCCGCGTGAAACGACGAAACACGATTAAGGA
AAGTAGCAGTGAAAGCAAAGATGGAAGTCGCGACTATGCTGGGAACGAGA
ATGGTGATGCCCACGAAGACAGTAATTATTTTACAAACGAGAGCGGAGAC
GGTGAAAGCGGCGAAATCATCAAAGGTCATAAAGACATTCTCGCACAGTT
GGAGGCAGATGGGAATAATGAATCAGAGGGCTTTCTCAGTGATTCGTCGG
AGGAACTCAAGCGGACGAAATCGAGGAGACTAACGAGCAGACAAAGGGCG
ATGCAAGGAGAGGACGTAAAGCTCGAATTTACCAAGCTGAATTCTCCAAA
AGCAAAGAAGAAAGATATCCCACAAGAGGACTGGGACCACGACGAGGAAA
TGGAACTAAAGCGGCAGCAAAAAGCAAGACTCCGTCAGATGGTGTCCGAA
AAGAGGAATAGGGAGAAAAGAGCAGCAATGGTAGACAAAGTTTTGAGAGG
GGTGACTTCCAAACGAAAAAAGTTTACTCTGGCCACCGAAGCCAGGGCCG
CACAAGTTGAAGTGCGTTTGACACAGAATGAGATGCGAGATGGATGTATG
CGATACGTGAGCAACAAAAACGGCTCTACACTTTCGATACCAAAAGACAC
AGATGTGCCACCATACTTGAGTAAGAGCCTTAAAGCATCGTATCCCCCGG
TATGCAAACGAGATCCTAAGACAGGGAAGAGAGTGCTTCCTAACGGGTCG
ACCTTAACTGCGACTGAATGA

protein sequence of Gcaud7956.t1

>Gcaud7956.t1 ID=Gcaud7956.t1|Name=Gcaud7956.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=407bp
MPPIESFSSDEVNKLPAVPRIRRSSGAKPPVPRGGRSGRKSGKRESTIAE
KKPVVQSSRRRIGKRSPREEFLTSEDDGNDSSHFVVRRTSRRTQKTRKVI
EDEDCEEDGEDAVNDSRDESSGKEDNELGVEMTGEEEDDDLMDDDDDQSK
SASASASRVKRRNTIKESSSESKDGSRDYAGNENGDAHEDSNYFTNESGD
GESGEIIKGHKDILAQLEADGNNESEGFLSDSSEELKRTKSRRLTSRQRA
MQGEDVKLEFTKLNSPKAKKKDIPQEDWDHDEEMELKRQQKARLRQMVSE
KRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLTQNEMRDGCM
RYVSNKNGSTLSIPKDTDVPPYLSKSLKASYPPVCKRDPKTGKRVLPNGS
TLTATE*

mRNA from alignment at NODE_1289_length_11770_cov_4.499786:6753..7973-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7956.t1 ID=Gcaud7956.t1|Name=Gcaud7956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at NODE_1289_length_11770_cov_4.499786:6753..7973- (Gracilaria caudata M_176_S67 male)
ATGCCGCCGATAGAATCATTCAGCAGTGACGAAGTGAACAAGCTTCCTGC
CGTGCCGAGGATTCGTCGCAGCAGCGGCGCGAAACCCCCAGTTCCTCGTG
GTGGTCGGTCGGGCAGAAAGAGCGGTAAGCGTGAGTCAACGATTGCGGAG
AAAAAACCGGTTGTACAATCGTCGCGTCGGAGAATTGGGAAAAGGAGCCC
TCGAGAAGAATTCCTAACCAGTGAAGACGACGGCAATGACTCTTCGCACT
TTGTGGTTCGGCGCACGTCGCGCCGAACCCAGAAGACTCGAAAGGTCATT
GAAGATGAAGATTGTGAGGAAGATGGCGAGGACGCTGTAAATGACAGTCG
GGACGAATCATCTGGCAAGGAAGACAATGAACTGGGTGTAGAAATGACAG
GAGAGGAGGAGGACGACGATTTGATGGACGACGATGATGACCAGTCCAAG
AGTGCTTCTGCATCTGCTTCCCGCGTGAAACGACGAAACACGATTAAGGA
AAGTAGCAGTGAAAGCAAAGATGGAAGTCGCGACTATGCTGGGAACGAGA
ATGGTGATGCCCACGAAGACAGTAATTATTTTACAAACGAGAGCGGAGAC
GGTGAAAGCGGCGAAATCATCAAAGGTCATAAAGACATTCTCGCACAGTT
GGAGGCAGATGGGAATAATGAATCAGAGGGCTTTCTCAGTGATTCGTCGG
AGGAACTCAAGCGGACGAAATCGAGGAGACTAACGAGCAGACAAAGGGCG
ATGCAAGGAGAGGACGTAAAGCTCGAATTTACCAAGCTGAATTCTCCAAA
AGCAAAGAAGAAAGATATCCCACAAGAGGACTGGGACCACGACGAGGAAA
TGGAACTAAAGCGGCAGCAAAAAGCAAGACTCCGTCAGATGGTGTCCGAA
AAGAGGAATAGGGAGAAAAGAGCAGCAATGGTAGACAAAGTTTTGAGAGG
GGTGACTTCCAAACGAAAAAAGTTTACTCTGGCCACCGAAGCCAGGGCCG
CACAAGTTGAAGTGCGTTTGACACAGAATGAGATGCGAGATGGATGTATG
CGATACGTGAGCAACAAAAACGGCTCTACACTTTCGATACCAAAAGACAC
AGATGTGCCACCATACTTGAGTAAGAGCCTTAAAGCATCGTATCCCCCGG
TATGCAAACGAGATCCTAAGACAGGGAAGAGAGTGCTTCCTAACGGGTCG
ACCTTAACTGCGACTGAATGA

Coding sequence (CDS) from alignment at NODE_1289_length_11770_cov_4.499786:6753..7973-

>Gcaud7956.t1 ID=Gcaud7956.t1|Name=Gcaud7956.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1221bp|location=Sequence derived from alignment at NODE_1289_length_11770_cov_4.499786:6753..7973- (Gracilaria caudata M_176_S67 male)
ATGCCGCCGATAGAATCATTCAGCAGTGACGAAGTGAACAAGCTTCCTGC
CGTGCCGAGGATTCGTCGCAGCAGCGGCGCGAAACCCCCAGTTCCTCGTG
GTGGTCGGTCGGGCAGAAAGAGCGGTAAGCGTGAGTCAACGATTGCGGAG
AAAAAACCGGTTGTACAATCGTCGCGTCGGAGAATTGGGAAAAGGAGCCC
TCGAGAAGAATTCCTAACCAGTGAAGACGACGGCAATGACTCTTCGCACT
TTGTGGTTCGGCGCACGTCGCGCCGAACCCAGAAGACTCGAAAGGTCATT
GAAGATGAAGATTGTGAGGAAGATGGCGAGGACGCTGTAAATGACAGTCG
GGACGAATCATCTGGCAAGGAAGACAATGAACTGGGTGTAGAAATGACAG
GAGAGGAGGAGGACGACGATTTGATGGACGACGATGATGACCAGTCCAAG
AGTGCTTCTGCATCTGCTTCCCGCGTGAAACGACGAAACACGATTAAGGA
AAGTAGCAGTGAAAGCAAAGATGGAAGTCGCGACTATGCTGGGAACGAGA
ATGGTGATGCCCACGAAGACAGTAATTATTTTACAAACGAGAGCGGAGAC
GGTGAAAGCGGCGAAATCATCAAAGGTCATAAAGACATTCTCGCACAGTT
GGAGGCAGATGGGAATAATGAATCAGAGGGCTTTCTCAGTGATTCGTCGG
AGGAACTCAAGCGGACGAAATCGAGGAGACTAACGAGCAGACAAAGGGCG
ATGCAAGGAGAGGACGTAAAGCTCGAATTTACCAAGCTGAATTCTCCAAA
AGCAAAGAAGAAAGATATCCCACAAGAGGACTGGGACCACGACGAGGAAA
TGGAACTAAAGCGGCAGCAAAAAGCAAGACTCCGTCAGATGGTGTCCGAA
AAGAGGAATAGGGAGAAAAGAGCAGCAATGGTAGACAAAGTTTTGAGAGG
GGTGACTTCCAAACGAAAAAAGTTTACTCTGGCCACCGAAGCCAGGGCCG
CACAAGTTGAAGTGCGTTTGACACAGAATGAGATGCGAGATGGATGTATG
CGATACGTGAGCAACAAAAACGGCTCTACACTTTCGATACCAAAAGACAC
AGATGTGCCACCATACTTGAGTAAGAGCCTTAAAGCATCGTATCCCCCGG
TATGCAAACGAGATCCTAAGACAGGGAAGAGAGTGCTTCCTAACGGGTCG
ACCTTAACTGCGACTGAATGA