Gcaud3846.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3846.t1
Unique Name	Gcaud3846.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1029_length_14845_cov_4.792124	contig	NODE_1029_length_14845_cov_4.792124:2536..3813 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3846	Gcaud3846	Gracilaria caudata M_176_S67 male	gene	NODE_1029_length_14845_cov_4.792124 2536..3813 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3846.t1.start1	Gcaud3846.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1029_length_14845_cov_4.792124 2536..2538 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3846.t1.CDS1	Gcaud3846.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1029_length_14845_cov_4.792124 2536..3813 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3846.t1.exon1	Gcaud3846.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1029_length_14845_cov_4.792124 2536..3813 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3846.t1.stop1	Gcaud3846.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1029_length_14845_cov_4.792124 3811..3813 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3846.t1	Gcaud3846.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1029_length_14845_cov_4.792124 2536..3813 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1029_length_14845_cov_4.792124:2536..3813+
coding sequence from alignment at NODE_1029_length_14845_cov_4.792124:2536..3813+

mRNA sequence

>Gcaud3846.t1 ID=Gcaud3846.t1|Name=Gcaud3846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp
MKAGVVLLLSFFCCSIALESRCRRDIVFPFVSCESDCSYSPPTNCLQKAQ
FGCGLHVCEQNGVQCTLDPSINPVCPNKEIPVDEVTIFPSRPVEFNLAFN
LSEFVRDVIFLIDASNSARSSLDAVKPELIRLVRNVSEIYNVGVGIYGSE
QSFDAKGFSVLQTVTSNVEDAVQALHDIPVLPDGPRTSIQALATLVGVRT
AQGAIESFEFRSRNRMFILVGDTPGREVPCDATFFTDIRRLLRRGNIAAI
SIGSPGLNAAIPPLHCDSHTIPEAQAPIREAQATDMIHGDVVNAPVTFEA
LFQAYDQSRRLPAPRGFFGNWGRNVWVTQNTTQRMFPFFQMPFPVPLSDG
CNERVQLSTPVPWPRPLQIPTEEVGTVRLSVEPWACRNGSFTCEVVIKDA
RMGQFSSPSTSRLDGHVHIVKVNAC*

spliced messenger RNA

>Gcaud3846.t1 ID=Gcaud3846.t1|Name=Gcaud3846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at NODE_1029_length_14845_cov_4.792124:2536..3813+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCGGTGTTGTTCTGCTGCTCTCATTTTTCTGCTGCTCTATCGC
CCTCGAGTCCAGATGTCGTCGAGACATCGTGTTCCCGTTCGTATCATGTG
AGTCTGATTGTTCGTATTCCCCGCCAACCAATTGTCTTCAAAAAGCACAG
TTTGGATGTGGCCTGCATGTATGCGAACAGAACGGCGTTCAATGCACGCT
GGACCCGTCAATTAATCCCGTTTGCCCAAACAAAGAGATTCCCGTCGACG
AAGTGACCATCTTCCCGTCCCGACCGGTTGAATTCAATCTGGCCTTCAAT
CTCAGCGAGTTTGTGAGAGATGTGATTTTCCTCATTGATGCCAGCAACTC
CGCAAGAAGTTCGTTGGATGCTGTGAAACCGGAGCTCATCAGGTTGGTAC
GAAATGTGTCCGAGATTTACAACGTGGGTGTCGGTATCTATGGATCGGAA
CAATCATTCGACGCTAAAGGATTCTCCGTGCTACAGACTGTGACTTCAAA
CGTGGAAGATGCTGTACAAGCGCTACATGACATTCCAGTGCTACCCGACG
GACCGCGAACATCCATACAGGCGCTTGCTACTTTGGTGGGAGTTCGCACT
GCGCAGGGAGCCATAGAGAGTTTTGAATTCCGCTCTCGGAACAGAATGTT
CATTCTGGTCGGCGACACGCCCGGCAGAGAAGTTCCTTGTGACGCCACAT
TCTTCACCGACATCAGAAGGTTACTTCGAAGGGGAAATATCGCCGCGATT
AGCATTGGAAGCCCCGGATTAAATGCCGCCATCCCGCCACTTCACTGTGA
CAGCCACACAATCCCTGAGGCACAAGCACCGATTCGAGAAGCGCAGGCGA
CCGATATGATCCACGGAGACGTGGTAAATGCACCAGTGACGTTCGAAGCT
CTGTTCCAAGCTTACGATCAAAGCAGAAGGCTCCCTGCTCCCAGGGGCTT
TTTCGGCAACTGGGGCAGAAACGTGTGGGTGACGCAGAACACTACGCAAC
GCATGTTCCCGTTCTTCCAAATGCCGTTTCCAGTACCTCTTTCTGATGGG
TGTAACGAACGCGTGCAGTTGAGCACACCGGTTCCCTGGCCGCGACCGCT
GCAGATTCCGACGGAGGAGGTGGGAACGGTGCGTTTGTCTGTGGAGCCAT
GGGCTTGTAGAAATGGGTCGTTTACGTGCGAAGTGGTGATCAAAGACGCT
AGGATGGGGCAGTTCAGTTCGCCGTCTACCTCCAGACTAGATGGTCATGT
GCACATAGTCAAGGTGAACGCTTGTTGA

protein sequence of Gcaud3846.t1

>Gcaud3846.t1 ID=Gcaud3846.t1|Name=Gcaud3846.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=426bp
MKAGVVLLLSFFCCSIALESRCRRDIVFPFVSCESDCSYSPPTNCLQKAQ
FGCGLHVCEQNGVQCTLDPSINPVCPNKEIPVDEVTIFPSRPVEFNLAFN
LSEFVRDVIFLIDASNSARSSLDAVKPELIRLVRNVSEIYNVGVGIYGSE
QSFDAKGFSVLQTVTSNVEDAVQALHDIPVLPDGPRTSIQALATLVGVRT
AQGAIESFEFRSRNRMFILVGDTPGREVPCDATFFTDIRRLLRRGNIAAI
SIGSPGLNAAIPPLHCDSHTIPEAQAPIREAQATDMIHGDVVNAPVTFEA
LFQAYDQSRRLPAPRGFFGNWGRNVWVTQNTTQRMFPFFQMPFPVPLSDG
CNERVQLSTPVPWPRPLQIPTEEVGTVRLSVEPWACRNGSFTCEVVIKDA
RMGQFSSPSTSRLDGHVHIVKVNAC*

mRNA from alignment at NODE_1029_length_14845_cov_4.792124:2536..3813+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3846.t1 ID=Gcaud3846.t1|Name=Gcaud3846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at NODE_1029_length_14845_cov_4.792124:2536..3813+ (Gracilaria caudata M_176_S67 male)
ATGAAGGCCGGTGTTGTTCTGCTGCTCTCATTTTTCTGCTGCTCTATCGC
CCTCGAGTCCAGATGTCGTCGAGACATCGTGTTCCCGTTCGTATCATGTG
AGTCTGATTGTTCGTATTCCCCGCCAACCAATTGTCTTCAAAAAGCACAG
TTTGGATGTGGCCTGCATGTATGCGAACAGAACGGCGTTCAATGCACGCT
GGACCCGTCAATTAATCCCGTTTGCCCAAACAAAGAGATTCCCGTCGACG
AAGTGACCATCTTCCCGTCCCGACCGGTTGAATTCAATCTGGCCTTCAAT
CTCAGCGAGTTTGTGAGAGATGTGATTTTCCTCATTGATGCCAGCAACTC
CGCAAGAAGTTCGTTGGATGCTGTGAAACCGGAGCTCATCAGGTTGGTAC
GAAATGTGTCCGAGATTTACAACGTGGGTGTCGGTATCTATGGATCGGAA
CAATCATTCGACGCTAAAGGATTCTCCGTGCTACAGACTGTGACTTCAAA
CGTGGAAGATGCTGTACAAGCGCTACATGACATTCCAGTGCTACCCGACG
GACCGCGAACATCCATACAGGCGCTTGCTACTTTGGTGGGAGTTCGCACT
GCGCAGGGAGCCATAGAGAGTTTTGAATTCCGCTCTCGGAACAGAATGTT
CATTCTGGTCGGCGACACGCCCGGCAGAGAAGTTCCTTGTGACGCCACAT
TCTTCACCGACATCAGAAGGTTACTTCGAAGGGGAAATATCGCCGCGATT
AGCATTGGAAGCCCCGGATTAAATGCCGCCATCCCGCCACTTCACTGTGA
CAGCCACACAATCCCTGAGGCACAAGCACCGATTCGAGAAGCGCAGGCGA
CCGATATGATCCACGGAGACGTGGTAAATGCACCAGTGACGTTCGAAGCT
CTGTTCCAAGCTTACGATCAAAGCAGAAGGCTCCCTGCTCCCAGGGGCTT
TTTCGGCAACTGGGGCAGAAACGTGTGGGTGACGCAGAACACTACGCAAC
GCATGTTCCCGTTCTTCCAAATGCCGTTTCCAGTACCTCTTTCTGATGGG
TGTAACGAACGCGTGCAGTTGAGCACACCGGTTCCCTGGCCGCGACCGCT
GCAGATTCCGACGGAGGAGGTGGGAACGGTGCGTTTGTCTGTGGAGCCAT
GGGCTTGTAGAAATGGGTCGTTTACGTGCGAAGTGGTGATCAAAGACGCT
AGGATGGGGCAGTTCAGTTCGCCGTCTACCTCCAGACTAGATGGTCATGT
GCACATAGTCAAGGTGAACGCTTGTTGA

Coding sequence (CDS) from alignment at NODE_1029_length_14845_cov_4.792124:2536..3813+

>Gcaud3846.t1 ID=Gcaud3846.t1|Name=Gcaud3846.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1278bp|location=Sequence derived from alignment at NODE_1029_length_14845_cov_4.792124:2536..3813+ (Gracilaria caudata M_176_S67 male)
ATGAAGGCCGGTGTTGTTCTGCTGCTCTCATTTTTCTGCTGCTCTATCGC
CCTCGAGTCCAGATGTCGTCGAGACATCGTGTTCCCGTTCGTATCATGTG
AGTCTGATTGTTCGTATTCCCCGCCAACCAATTGTCTTCAAAAAGCACAG
TTTGGATGTGGCCTGCATGTATGCGAACAGAACGGCGTTCAATGCACGCT
GGACCCGTCAATTAATCCCGTTTGCCCAAACAAAGAGATTCCCGTCGACG
AAGTGACCATCTTCCCGTCCCGACCGGTTGAATTCAATCTGGCCTTCAAT
CTCAGCGAGTTTGTGAGAGATGTGATTTTCCTCATTGATGCCAGCAACTC
CGCAAGAAGTTCGTTGGATGCTGTGAAACCGGAGCTCATCAGGTTGGTAC
GAAATGTGTCCGAGATTTACAACGTGGGTGTCGGTATCTATGGATCGGAA
CAATCATTCGACGCTAAAGGATTCTCCGTGCTACAGACTGTGACTTCAAA
CGTGGAAGATGCTGTACAAGCGCTACATGACATTCCAGTGCTACCCGACG
GACCGCGAACATCCATACAGGCGCTTGCTACTTTGGTGGGAGTTCGCACT
GCGCAGGGAGCCATAGAGAGTTTTGAATTCCGCTCTCGGAACAGAATGTT
CATTCTGGTCGGCGACACGCCCGGCAGAGAAGTTCCTTGTGACGCCACAT
TCTTCACCGACATCAGAAGGTTACTTCGAAGGGGAAATATCGCCGCGATT
AGCATTGGAAGCCCCGGATTAAATGCCGCCATCCCGCCACTTCACTGTGA
CAGCCACACAATCCCTGAGGCACAAGCACCGATTCGAGAAGCGCAGGCGA
CCGATATGATCCACGGAGACGTGGTAAATGCACCAGTGACGTTCGAAGCT
CTGTTCCAAGCTTACGATCAAAGCAGAAGGCTCCCTGCTCCCAGGGGCTT
TTTCGGCAACTGGGGCAGAAACGTGTGGGTGACGCAGAACACTACGCAAC
GCATGTTCCCGTTCTTCCAAATGCCGTTTCCAGTACCTCTTTCTGATGGG
TGTAACGAACGCGTGCAGTTGAGCACACCGGTTCCCTGGCCGCGACCGCT
GCAGATTCCGACGGAGGAGGTGGGAACGGTGCGTTTGTCTGTGGAGCCAT
GGGCTTGTAGAAATGGGTCGTTTACGTGCGAAGTGGTGATCAAAGACGCT
AGGATGGGGCAGTTCAGTTCGCCGTCTACCTCCAGACTAGATGGTCATGT
GCACATAGTCAAGGTGAACGCTTGTTGA