Gcaud3846.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3846.t1
Unique NameGcaud3846.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length426
Homology
BLAST of Gcaud3846.t1 vs. uniprot
Match: A0A2V3IGT8_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGT8_9FLOR)

HSP 1 Score: 550 bits (1416), Expect = 1.300e-192
Identity = 279/434 (64.29%), Postives = 331/434 (76.27%), Query Frame = 0
Query:    1 MKAGVVLLLSFFCCSIALESRCRRDIVFPFVSCESDC---SYSPPTNCLQKAQFGCGLHVCEQNGVQCTLDPSINPVCPNKEIPVDEVTIFPSRPVEFNLAFNLSEFVRDVIFLIDASNSARSSLDAVKPELIRLVRNVSEIYNVGVGIYGSEQSFDAKGFSVLQTVTSNVEDAVQALHDIPVLPDGPRTSIQALATLVGVRTAQGAIESFEFRSRNRMFILVGDTPGREVPCDATFFTDIRR--LLRRGN---IAAISIGSPGLNAAIPPLHCDSHTIPEAQAPIREAQATDM-IHGDVVNAPVTFEALFQAYDQSRRLPAPRGFFGNWGRNVWVTQNTTQRMFPFFQMPFPVPLSDGCNERVQLSTPVPWPRPLQIPTEEVGTVRLSVEPWACRNGSFTCEVVIKDARMGQFSSPSTSRLDGHVHIVKVNAC 425
            MK  ++LL++  C S AL SRCRR++VFPFVSC + C   SY     C +KAQFGC L  C +NG QC +DPSI+PVCPN EIPV+EVT+ P RPVEFNLAFNLSE+ RDVIFL DAS S RSSLDA+K +LIR +RNVS  Y+VG+G+YGSEQSF A G+SVLQTVT + E+AVQALH+IP+LPDGPRTS+ ALATL+G+RT +G I +F FRS+ R+F+L+GDTPGREVPCDA  F+DIR   + RRG    I   SIGSPGLNAAI    C+ HTIPEA  PI+  QA+D+ I G  V  PVTF+ L+  Y Q R  P PRG+F NWGR V VTQNTT R F +FQMP P+P SDGCNERV LSTPV WP PLQ PT+EVGT++L++ PWACRNGSFTCEVVIKD R     +PS+   DGHVHIVKVNAC
Sbjct:    1 MKLFLILLVALLCNSYALSSRCRRNVVFPFVSCGNTCGWHSYQSIWKCCRKAQFGCRLQWCTRNGFQCAVDPSISPVCPNNEIPVEEVTLIPHRPVEFNLAFNLSEYTRDVIFLFDASTSTRSSLDALKNDLIRFIRNVSSTYSVGIGLYGSEQSFGAAGYSVLQTVTPHSEEAVQALHNIPMLPDGPRTSMLALATLIGLRTVEGGIPNFGFRSQERIFLLIGDTPGREVPCDAPSFSDIRHDIINRRGPSNIILTASIGSPGLNAAISAPPCNYHTIPEALNPIQAEQASDISIRGGQVMTPVTFDTLYTTYHQIRSYP-PRGYFPNWGRAVTVTQNTTSRGFGYFQMPVPIPQSDGCNERVILSTPVSWPVPLQFPTKEVGTIQLALAPWACRNGSFTCEVVIKDVRRNIIGTPSSRNFDGHVHIVKVNAC 433          
BLAST of Gcaud3846.t1 vs. uniprot
Match: A0A2V3IME3_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME3_9FLOR)

HSP 1 Score: 231 bits (588), Expect = 7.540e-68
Identity = 156/420 (37.14%), Postives = 229/420 (54.52%), Query Frame = 0
Query:   21 RCRRDIVFPFVSCESDC-SYSPP--TNCLQKAQFGCGLHVCEQNGVQCTLDPSI---NPVCPNKEIPVDEVTIFPSRPVEFNLAFNLSEFVRDVIFLIDASNSARSSLDAVKPELIRLVRNVSEIYNVGVGIYGSEQSFDAKGFSVLQTVTSNVEDAVQALHDIPVLPDGPRTSIQALATLVGVRTAQGAIESFEFRSRNRMFILVGDTPGREVPCDATFFTDIRRLLRRGNIAAISIGSPGLNAAIP-PLHCDSHTIPEAQAPIREAQATDMIH---GDVVNAPVTFEALFQAYDQSRRLPAPRGFFGNW--GRNVWVTQNTTQRMFPFFQMPFPVPL---SDGCNERVQLSTPVPWPRPLQIPTEEVGTVRLSVEPWACRNGSFTCEVVIKDARMGQFSSPSTSRLDGHVHIVKVNAC 425
            +CRR  VFPFV+CES C SY P   + C QKAQFGC    C  +  +C L+P++   NP CPN E+PV  + +  +  V+FNLA NL  +  DV+ LID S+S R  L A+K EL   VR ++    VGV +YGSE+S+D  G SVL  VT  V+ A++AL  IP   DG RT+I AL TL        ++     R   R+ +L+GD PGRE  C   +  D+  +L    + ++S+GS GLN+A+P P  C + +  +  +PI   QA D+++   G+VV   VT  +L  A D  RR P    ++ N   G N+ V+  +    FP ++ P+  P+   S+GC  +V L T    P  +  P E   +V +++    C +G FTCE+ + + R G     S S    H  ++K++ C
Sbjct:   27 QCRRKNVFPFVTCESKCFSYYPNFGSGCSQKAQFGCEYKKCSSSSYRCALNPAVEKDNP-CPNGEVPVKSINL--TSFVDFNLAINLRGYSTDVVLLIDTSSSTRPHLKAIKNELSSFVRQLNGSAKVGVAVYGSEESYDESGLSVLSAVTDYVDPALEALESIPETVDGTRTTITALKTL------SSSVAGLNLRGNKRIIVLIGDRPGREPDCRNGYNRDM--VLPSSTMISVSLGSDGLNSALPAPSACMNGSYYDP-SPIAVGQARDIVNRTNGEVVEI-VTAASLLWAVDTVRRRPV---YWYNRPPGSNIRVSSAS----FPLYRGPYTPPVQRYSNGCGNKVYLRTSG-LPAFISAPAEVTASVHVALPKGVCIHGPFTCEIRVVEIRRGGEYPSSWSIPFEHFEVIKIHGC 425          
BLAST of Gcaud3846.t1 vs. uniprot
Match: A0A2V3IEV7_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEV7_9FLOR)

HSP 1 Score: 149 bits (377), Expect = 7.250e-38
Identity = 114/355 (32.11%), Postives = 178/355 (50.14%), Query Frame = 0
Query:   82 VDEVTIFPSRPVEFNLAFNLSEFVRDVIFLIDASNSARSSLDAVKPELIRLVRNVSEIYNVGVGIYGSEQSFDAKGFSVLQTVTSNVEDAVQALHDIPVLPDGPRTSIQALATLVGVRTAQGAIESFEFRSRNRMFILVGDTPGREVPCDATFFTDIRRLL-RRGNIAAISIGSPGLNAAIP-PLHCD---SHTIPEAQAPIREAQATDMIHGDVVNAPVTFEALFQAYDQSRRLPAPRGFFGNWGRNVWVTQNTTQRMFPFFQMPFPVPL------SDGCNERVQLSTPVPWPRPLQIPTEEVGTVRLSVEPWACRNGSFTCEVVIKDARMGQFSSPSTSRLDGHVHIVKVNAC 425
            V+ VT+    P++ +L  N+    +D++ L+DAS S R+ L+ VK +L   VR + ++ NV V  YG E      G+SV    TS+V  A +AL +IP++ DGPRTSI A+ +++  +   G I    F +R R+ +LVGDTPGRE  C     +D      +R  +  +++ SPGLNAA+P P  C    S  IPE Q      +  D   G++++  VT   L ++     R+ A  G  G  G ++ V   T    + + +   P         + GC++RV +      P     P +  G + LS+    C+ G F CEV +K+ R+ +FS    S    H H++ V AC
Sbjct:    2 VNNVTLRHHFPIDISLDINVPGDTQDIVMLVDASQSTRAKLNNVKEQLKSFVRTLGDVGNVSVAFYGGESDMGETGYSVALKATSDVNRAAEALDNIPIVADGPRTSITAMWSIM--QHQDGTIPLGLFANR-RIIVLVGDTPGREPECRHGIKSDRMSFSSQRTRVMVVNLASPGLNAALPAPAACGYITSAAIPEGQG----TRLADTSEGELISQ-VTSSKLRESI-LKLRMNAANGLHGK-GSHISVLSKT----YTYTEYTCPSSFCARTITTKGCDDRVIIRKSN-IPDFAHGPVQMTGKISLSLPAGICQRGPFYCEVEVKE-RLERFSYSHWSLPQRHTHLIGVKAC 340          
The following BLAST results are available for this feature:
BLAST of Gcaud3846.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IGT8_9FLOR1.300e-19264.29VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IME3_9FLOR7.540e-6837.14VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IEV7_9FLOR7.250e-3832.11VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 105..231
e-value: 3.9E-6
score: 28.9
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 87..254
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..425
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availableCDDcd00198vWFAcoord: 106..261
e-value: 3.08633E-7
score: 47.9458
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 107..253
score: 10.851622

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1029_length_14845_cov_4.792124contigNODE_1029_length_14845_cov_4.792124:2536..3813 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3846.t1Gcaud3846.t1Gracilaria caudata M_176_S67 malemRNANODE_1029_length_14845_cov_4.792124 2536..3813 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3846.t1 ID=Gcaud3846.t1|Name=Gcaud3846.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=426bp
MKAGVVLLLSFFCCSIALESRCRRDIVFPFVSCESDCSYSPPTNCLQKAQ
FGCGLHVCEQNGVQCTLDPSINPVCPNKEIPVDEVTIFPSRPVEFNLAFN
LSEFVRDVIFLIDASNSARSSLDAVKPELIRLVRNVSEIYNVGVGIYGSE
QSFDAKGFSVLQTVTSNVEDAVQALHDIPVLPDGPRTSIQALATLVGVRT
AQGAIESFEFRSRNRMFILVGDTPGREVPCDATFFTDIRRLLRRGNIAAI
SIGSPGLNAAIPPLHCDSHTIPEAQAPIREAQATDMIHGDVVNAPVTFEA
LFQAYDQSRRLPAPRGFFGNWGRNVWVTQNTTQRMFPFFQMPFPVPLSDG
CNERVQLSTPVPWPRPLQIPTEEVGTVRLSVEPWACRNGSFTCEVVIKDA
RMGQFSSPSTSRLDGHVHIVKVNAC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR002035VWF_A