Gcaud2789.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2789.t1
Unique NameGcaud2789.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_127_length_46135_cov_4.421901contigNODE_127_length_46135_cov_4.421901:5029..6612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707330.1
Preferred nameEPRS
PFAMsGST_C,GST_C_3,HGTP_anticodon,ProRS-C_1,WHEP-TRS,tRNA-synt_1c,tRNA-synt_1c_C,tRNA-synt_2b
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01885,ko:K14163
KEGG ReactionR03661,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
GOsGO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004818,GO:0004819,GO:0004827,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006417,GO:0006418,GO:0006424,GO:0006425,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016043,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0017148,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034641,GO:0034645,GO:0034660,GO:0035613,GO:0035770,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044539,GO:0045087,GO:0046483,GO:0046872,GO:0046914,GO:0046942,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097452,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990904,GO:2000112,GO:2000113
Evalue5.55e-198
EggNOG OGsCOG0008@1|root,KOG1147@2759|Eukaryota
EC6.1.1.15,6.1.1.17
Descriptionglutamyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2789Gcaud2789Gracilaria caudata M_176_S67 malegeneNODE_127_length_46135_cov_4.421901 5029..6612 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2789.t1.stop1Gcaud2789.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_127_length_46135_cov_4.421901 5029..5031 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2789.t1.CDS1Gcaud2789.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_127_length_46135_cov_4.421901 5029..6612 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2789.t1.exon1Gcaud2789.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_127_length_46135_cov_4.421901 5029..6612 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2789.t1.start1Gcaud2789.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_127_length_46135_cov_4.421901 6610..6612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2789.t1Gcaud2789.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_127_length_46135_cov_4.421901 5029..6612 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2789.t1 ID=Gcaud2789.t1|Name=Gcaud2789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp
MTRQDSWGDVMRLVKSKGNMDVGLKGAEKGKVVTRFPPEPSGFLHVGHAK
AALLNDYFARHYEGKLIVRFDDTNTEKATQGFEDAIVQDLDRLGIKPDVV
EYTSDYFPKLLEVAERLIKEEKAYVDPTPPEEMKAQRLKKEANQYRTQSM
EENLRLWQEMLNGTEEGEKCVLRAKFDIRHKNGTLRDPTMYRTKKVPHHR
TGNKYNVYPTYDFSCPLVDSWEGVTHALRSLEYKDREKQYQWFCKAADVR
CASIWEFSRLDFVRTVLSKRKLQKLVDIGAARSWDDPRFPTIQGIRRRGM
TIQGLRAFILSQGASRNNTTQEWDKIWTVNKRVIDPLAARHVALDVSAAK
SVTVVNADEEVRNVPKHKKNADVGTKHVIYKNKILIEGEDAASLEVGEKV
TFMDWGNMEITDRDGDGNLQAKFLPDDQNFKGTKKVTWLADVEDLVPLRI
CSYSDILTKDRLEEDDDFEDFINKDSERVKMLKGDINLRLLQKGETIQLE
RRGYYICDNTVPPITLIEIPDGKVARR*
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spliced messenger RNA

>Gcaud2789.t1 ID=Gcaud2789.t1|Name=Gcaud2789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:5029..6612- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGACAAGATTCTTGGGGGGACGTGATGCGTCTCGTGAAGAGCAA
GGGCAACATGGATGTAGGATTGAAGGGAGCAGAGAAGGGGAAGGTCGTCA
CTCGATTTCCGCCAGAGCCTAGTGGATTTCTGCATGTTGGTCATGCTAAA
GCCGCACTTTTGAACGATTATTTTGCCAGACATTACGAGGGAAAACTGAT
AGTTCGCTTTGACGATACAAACACCGAAAAGGCAACTCAGGGATTTGAAG
ATGCCATAGTTCAAGATCTAGATCGTCTAGGAATCAAACCGGACGTAGTT
GAATATACATCCGACTACTTTCCAAAACTTCTTGAAGTGGCTGAGCGTCT
TATCAAAGAAGAAAAGGCATACGTAGATCCAACCCCTCCGGAAGAGATGA
AGGCCCAGCGTCTGAAGAAAGAAGCTAATCAGTATCGTACGCAGAGTATG
GAGGAGAACCTGCGGCTTTGGCAGGAAATGTTGAATGGTACGGAGGAGGG
TGAAAAATGCGTGTTGCGAGCAAAGTTTGACATAAGACACAAGAATGGAA
CTCTCAGAGATCCTACAATGTACAGGACAAAAAAAGTACCACACCATCGT
ACTGGAAACAAGTACAATGTGTATCCAACTTATGATTTTTCCTGTCCACT
TGTTGATTCTTGGGAGGGTGTCACTCATGCTCTGCGTTCTCTCGAGTATA
AGGATCGAGAGAAACAATATCAGTGGTTCTGCAAAGCCGCCGACGTTCGA
TGCGCATCTATCTGGGAGTTCTCGAGACTTGATTTTGTTCGCACGGTCTT
GTCGAAACGCAAGTTACAGAAGCTCGTTGACATCGGAGCAGCTCGTTCTT
GGGATGACCCACGTTTCCCAACCATACAGGGGATACGTAGAAGGGGAATG
ACCATCCAAGGGTTGCGTGCATTCATTTTGTCGCAGGGAGCATCGAGAAA
CAACACAACGCAAGAATGGGACAAGATCTGGACTGTTAATAAGCGTGTCA
TTGACCCATTGGCCGCTCGTCATGTGGCCTTGGATGTCTCGGCTGCAAAA
TCAGTAACCGTTGTCAACGCAGACGAGGAGGTTAGGAATGTACCGAAGCA
CAAGAAGAATGCAGATGTAGGAACCAAGCATGTGATTTATAAGAACAAAA
TCTTGATTGAAGGTGAAGATGCTGCAAGTCTTGAAGTAGGAGAAAAAGTG
ACATTCATGGATTGGGGAAACATGGAGATAACCGATCGTGACGGGGATGG
AAACCTGCAAGCAAAGTTCCTTCCTGATGATCAGAACTTCAAAGGGACGA
AGAAAGTGACCTGGTTGGCAGATGTGGAGGATCTTGTACCACTACGAATC
TGTTCGTACTCGGATATTTTAACCAAGGATCGTCTTGAAGAAGACGACGA
TTTCGAGGACTTCATTAACAAGGATAGTGAGAGAGTGAAAATGTTGAAGG
GGGACATCAATCTTCGATTACTTCAAAAGGGAGAAACAATCCAGTTAGAG
CGACGTGGGTACTACATATGTGACAATACCGTACCCCCGATTACGTTGAT
TGAAATTCCCGATGGAAAAGTTGCGAGACGGTAA
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protein sequence of Gcaud2789.t1

>Gcaud2789.t1 ID=Gcaud2789.t1|Name=Gcaud2789.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=528bp
MTRQDSWGDVMRLVKSKGNMDVGLKGAEKGKVVTRFPPEPSGFLHVGHAK
AALLNDYFARHYEGKLIVRFDDTNTEKATQGFEDAIVQDLDRLGIKPDVV
EYTSDYFPKLLEVAERLIKEEKAYVDPTPPEEMKAQRLKKEANQYRTQSM
EENLRLWQEMLNGTEEGEKCVLRAKFDIRHKNGTLRDPTMYRTKKVPHHR
TGNKYNVYPTYDFSCPLVDSWEGVTHALRSLEYKDREKQYQWFCKAADVR
CASIWEFSRLDFVRTVLSKRKLQKLVDIGAARSWDDPRFPTIQGIRRRGM
TIQGLRAFILSQGASRNNTTQEWDKIWTVNKRVIDPLAARHVALDVSAAK
SVTVVNADEEVRNVPKHKKNADVGTKHVIYKNKILIEGEDAASLEVGEKV
TFMDWGNMEITDRDGDGNLQAKFLPDDQNFKGTKKVTWLADVEDLVPLRI
CSYSDILTKDRLEEDDDFEDFINKDSERVKMLKGDINLRLLQKGETIQLE
RRGYYICDNTVPPITLIEIPDGKVARR*
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mRNA from alignment at NODE_127_length_46135_cov_4.421901:5029..6612-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2789.t1 ID=Gcaud2789.t1|Name=Gcaud2789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:5029..6612- (Gracilaria caudata M_176_S67 male)
ATGACGAGACAAGATTCTTGGGGGGACGTGATGCGTCTCGTGAAGAGCAA
GGGCAACATGGATGTAGGATTGAAGGGAGCAGAGAAGGGGAAGGTCGTCA
CTCGATTTCCGCCAGAGCCTAGTGGATTTCTGCATGTTGGTCATGCTAAA
GCCGCACTTTTGAACGATTATTTTGCCAGACATTACGAGGGAAAACTGAT
AGTTCGCTTTGACGATACAAACACCGAAAAGGCAACTCAGGGATTTGAAG
ATGCCATAGTTCAAGATCTAGATCGTCTAGGAATCAAACCGGACGTAGTT
GAATATACATCCGACTACTTTCCAAAACTTCTTGAAGTGGCTGAGCGTCT
TATCAAAGAAGAAAAGGCATACGTAGATCCAACCCCTCCGGAAGAGATGA
AGGCCCAGCGTCTGAAGAAAGAAGCTAATCAGTATCGTACGCAGAGTATG
GAGGAGAACCTGCGGCTTTGGCAGGAAATGTTGAATGGTACGGAGGAGGG
TGAAAAATGCGTGTTGCGAGCAAAGTTTGACATAAGACACAAGAATGGAA
CTCTCAGAGATCCTACAATGTACAGGACAAAAAAAGTACCACACCATCGT
ACTGGAAACAAGTACAATGTGTATCCAACTTATGATTTTTCCTGTCCACT
TGTTGATTCTTGGGAGGGTGTCACTCATGCTCTGCGTTCTCTCGAGTATA
AGGATCGAGAGAAACAATATCAGTGGTTCTGCAAAGCCGCCGACGTTCGA
TGCGCATCTATCTGGGAGTTCTCGAGACTTGATTTTGTTCGCACGGTCTT
GTCGAAACGCAAGTTACAGAAGCTCGTTGACATCGGAGCAGCTCGTTCTT
GGGATGACCCACGTTTCCCAACCATACAGGGGATACGTAGAAGGGGAATG
ACCATCCAAGGGTTGCGTGCATTCATTTTGTCGCAGGGAGCATCGAGAAA
CAACACAACGCAAGAATGGGACAAGATCTGGACTGTTAATAAGCGTGTCA
TTGACCCATTGGCCGCTCGTCATGTGGCCTTGGATGTCTCGGCTGCAAAA
TCAGTAACCGTTGTCAACGCAGACGAGGAGGTTAGGAATGTACCGAAGCA
CAAGAAGAATGCAGATGTAGGAACCAAGCATGTGATTTATAAGAACAAAA
TCTTGATTGAAGGTGAAGATGCTGCAAGTCTTGAAGTAGGAGAAAAAGTG
ACATTCATGGATTGGGGAAACATGGAGATAACCGATCGTGACGGGGATGG
AAACCTGCAAGCAAAGTTCCTTCCTGATGATCAGAACTTCAAAGGGACGA
AGAAAGTGACCTGGTTGGCAGATGTGGAGGATCTTGTACCACTACGAATC
TGTTCGTACTCGGATATTTTAACCAAGGATCGTCTTGAAGAAGACGACGA
TTTCGAGGACTTCATTAACAAGGATAGTGAGAGAGTGAAAATGTTGAAGG
GGGACATCAATCTTCGATTACTTCAAAAGGGAGAAACAATCCAGTTAGAG
CGACGTGGGTACTACATATGTGACAATACCGTACCCCCGATTACGTTGAT
TGAAATTCCCGATGGAAAAGTTGCGAGACGGTAA
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Coding sequence (CDS) from alignment at NODE_127_length_46135_cov_4.421901:5029..6612-

>Gcaud2789.t1 ID=Gcaud2789.t1|Name=Gcaud2789.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1584bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:5029..6612- (Gracilaria caudata M_176_S67 male)
ATGACGAGACAAGATTCTTGGGGGGACGTGATGCGTCTCGTGAAGAGCAA
GGGCAACATGGATGTAGGATTGAAGGGAGCAGAGAAGGGGAAGGTCGTCA
CTCGATTTCCGCCAGAGCCTAGTGGATTTCTGCATGTTGGTCATGCTAAA
GCCGCACTTTTGAACGATTATTTTGCCAGACATTACGAGGGAAAACTGAT
AGTTCGCTTTGACGATACAAACACCGAAAAGGCAACTCAGGGATTTGAAG
ATGCCATAGTTCAAGATCTAGATCGTCTAGGAATCAAACCGGACGTAGTT
GAATATACATCCGACTACTTTCCAAAACTTCTTGAAGTGGCTGAGCGTCT
TATCAAAGAAGAAAAGGCATACGTAGATCCAACCCCTCCGGAAGAGATGA
AGGCCCAGCGTCTGAAGAAAGAAGCTAATCAGTATCGTACGCAGAGTATG
GAGGAGAACCTGCGGCTTTGGCAGGAAATGTTGAATGGTACGGAGGAGGG
TGAAAAATGCGTGTTGCGAGCAAAGTTTGACATAAGACACAAGAATGGAA
CTCTCAGAGATCCTACAATGTACAGGACAAAAAAAGTACCACACCATCGT
ACTGGAAACAAGTACAATGTGTATCCAACTTATGATTTTTCCTGTCCACT
TGTTGATTCTTGGGAGGGTGTCACTCATGCTCTGCGTTCTCTCGAGTATA
AGGATCGAGAGAAACAATATCAGTGGTTCTGCAAAGCCGCCGACGTTCGA
TGCGCATCTATCTGGGAGTTCTCGAGACTTGATTTTGTTCGCACGGTCTT
GTCGAAACGCAAGTTACAGAAGCTCGTTGACATCGGAGCAGCTCGTTCTT
GGGATGACCCACGTTTCCCAACCATACAGGGGATACGTAGAAGGGGAATG
ACCATCCAAGGGTTGCGTGCATTCATTTTGTCGCAGGGAGCATCGAGAAA
CAACACAACGCAAGAATGGGACAAGATCTGGACTGTTAATAAGCGTGTCA
TTGACCCATTGGCCGCTCGTCATGTGGCCTTGGATGTCTCGGCTGCAAAA
TCAGTAACCGTTGTCAACGCAGACGAGGAGGTTAGGAATGTACCGAAGCA
CAAGAAGAATGCAGATGTAGGAACCAAGCATGTGATTTATAAGAACAAAA
TCTTGATTGAAGGTGAAGATGCTGCAAGTCTTGAAGTAGGAGAAAAAGTG
ACATTCATGGATTGGGGAAACATGGAGATAACCGATCGTGACGGGGATGG
AAACCTGCAAGCAAAGTTCCTTCCTGATGATCAGAACTTCAAAGGGACGA
AGAAAGTGACCTGGTTGGCAGATGTGGAGGATCTTGTACCACTACGAATC
TGTTCGTACTCGGATATTTTAACCAAGGATCGTCTTGAAGAAGACGACGA
TTTCGAGGACTTCATTAACAAGGATAGTGAGAGAGTGAAAATGTTGAAGG
GGGACATCAATCTTCGATTACTTCAAAAGGGAGAAACAATCCAGTTAGAG
CGACGTGGGTACTACATATGTGACAATACCGTACCCCCGATTACGTTGAT
TGAAATTCCCGATGGAAAAGTTGCGAGACGGTAA
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