Gcaud2788.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2788.t1
Unique NameGcaud2788.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_127_length_46135_cov_4.421901contigNODE_127_length_46135_cov_4.421901:3669..4207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1305836.AXVE01000011_gene1038
PFAMsDUF1761
Max annot lvl91061|Bacilli
Evalue5.59e-05
EggNOG OGs2AEMC@1|root,314H9@2|Bacteria,1W0UA@1239|Firmicutes,4HRRY@91061|Bacilli
DescriptionProtein of unknown function (DUF1761)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2788Gcaud2788Gracilaria caudata M_176_S67 malegeneNODE_127_length_46135_cov_4.421901 3669..4207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2788.t1Gcaud2788.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_127_length_46135_cov_4.421901 3669..4207 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2788.t1.start1Gcaud2788.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_127_length_46135_cov_4.421901 3669..3671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2788.t1.CDS1Gcaud2788.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_127_length_46135_cov_4.421901 3669..3758 +
Gcaud2788.t1.CDS2Gcaud2788.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_127_length_46135_cov_4.421901 3857..4207 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2788.t1.exon1Gcaud2788.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_127_length_46135_cov_4.421901 3669..3758 +
Gcaud2788.t1.exon2Gcaud2788.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_127_length_46135_cov_4.421901 3857..4207 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2788.t1.intron1Gcaud2788.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_127_length_46135_cov_4.421901 3759..3856 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2788.t1.stop1Gcaud2788.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_127_length_46135_cov_4.421901 4205..4207 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2788.t1 ID=Gcaud2788.t1|Name=Gcaud2788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=147bp
MIVFGMAPMFGYLSVPAFVVSCLVNFIVSTVWYSTPVFGATSKRLAFGKR
RRKKLTHRGIIASVTGSVLSFSFFPFVLHVVRCRGAFDGALWGLALGFFF
DSGMNVSHSFFEKRSFALFLIHRGCHALSLTLAGIVLGVLCGSPDL*
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spliced messenger RNA

>Gcaud2788.t1 ID=Gcaud2788.t1|Name=Gcaud2788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:3669..4207+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGTATTCGGAATGGCGCCCATGTTTGGCTATCTCAGTGTTCCAGC
CTTTGTGGTGTCATGCCTAGTTAACTTCATCGTCAGCACGGTTTGGTATT
CCACTCCCGTATTCGGGGCTACATCCAAGCGCCTAGCGTTCGGGAAGCGC
AGGAGAAAGAAGTTGACGCATAGAGGAATCATCGCATCTGTTACGGGAAG
TGTTTTATCATTCTCTTTCTTTCCGTTTGTTCTTCATGTTGTCAGGTGCA
GGGGCGCGTTTGATGGTGCTTTGTGGGGTCTGGCGCTCGGGTTTTTCTTT
GACTCTGGTATGAATGTCTCACACAGCTTCTTCGAAAAGCGTTCATTTGC
TTTGTTCCTTATCCATCGTGGATGCCATGCTCTCTCCCTCACCCTTGCCG
GTATTGTCCTGGGGGTATTATGCGGTAGTCCGGATCTGTAA
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protein sequence of Gcaud2788.t1

>Gcaud2788.t1 ID=Gcaud2788.t1|Name=Gcaud2788.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=147bp
MIVFGMAPMFGYLSVPAFVVSCLVNFIVSTVWYSTPVFGATSKRLAFGKR
RRKKLTHRGIIASVTGSVLSFSFFPFVLHVVRCRGAFDGALWGLALGFFF
DSGMNVSHSFFEKRSFALFLIHRGCHALSLTLAGIVLGVLCGSPDL*
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mRNA from alignment at NODE_127_length_46135_cov_4.421901:3669..4207+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2788.t1 ID=Gcaud2788.t1|Name=Gcaud2788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=539bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:3669..4207+ (Gracilaria caudata M_176_S67 male)
ATGATCGTATTCGGAATGGCGCCCATGTTTGGCTATCTCAGTGTTCCAGC
CTTTGTGGTGTCATGCCTAGTTAACTTCATCGTCAGCACGGTACGTGAAC
CTCTCGCCCTGGCGAATAGGTTTCTGTACGCGTTGCGTTCGCTGTTCAAG
AGGCGCTAACTGCCGCTGTTTCTGTTCATTTTTGTCAGGTTTGGTATTCC
ACTCCCGTATTCGGGGCTACATCCAAGCGCCTAGCGTTCGGGAAGCGCAG
GAGAAAGAAGTTGACGCATAGAGGAATCATCGCATCTGTTACGGGAAGTG
TTTTATCATTCTCTTTCTTTCCGTTTGTTCTTCATGTTGTCAGGTGCAGG
GGCGCGTTTGATGGTGCTTTGTGGGGTCTGGCGCTCGGGTTTTTCTTTGA
CTCTGGTATGAATGTCTCACACAGCTTCTTCGAAAAGCGTTCATTTGCTT
TGTTCCTTATCCATCGTGGATGCCATGCTCTCTCCCTCACCCTTGCCGGT
ATTGTCCTGGGGGTATTATGCGGTAGTCCGGATCTGTAA
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Coding sequence (CDS) from alignment at NODE_127_length_46135_cov_4.421901:3669..4207+

>Gcaud2788.t1 ID=Gcaud2788.t1|Name=Gcaud2788.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=441bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:3669..4207+ (Gracilaria caudata M_176_S67 male)
ATGATCGTATTCGGAATGGCGCCCATGTTTGGCTATCTCAGTGTTCCAGC
CTTTGTGGTGTCATGCCTAGTTAACTTCATCGTCAGCACGGTTTGGTATT
CCACTCCCGTATTCGGGGCTACATCCAAGCGCCTAGCGTTCGGGAAGCGC
AGGAGAAAGAAGTTGACGCATAGAGGAATCATCGCATCTGTTACGGGAAG
TGTTTTATCATTCTCTTTCTTTCCGTTTGTTCTTCATGTTGTCAGGTGCA
GGGGCGCGTTTGATGGTGCTTTGTGGGGTCTGGCGCTCGGGTTTTTCTTT
GACTCTGGTATGAATGTCTCACACAGCTTCTTCGAAAAGCGTTCATTTGC
TTTGTTCCTTATCCATCGTGGATGCCATGCTCTCTCCCTCACCCTTGCCG
GTATTGTCCTGGGGGTATTATGCGGTAGTCCGGATCTGTAA
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