Gcaud9350.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9350.t1
Unique Name	Gcaud9350.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1027_length_14887_cov_3.970330	contig	NODE_1027_length_14887_cov_3.970330:8173..9864 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_03376T0
PFAMs	C2,Copine,zf-C3HC4_3,zf-MYND
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K16280
Evalue	1.43e-86
EggNOG OGs	KOG1327@1\|root,KOG1327@2759\|Eukaryota
EC	2.3.2.27
Description	negative regulation of response to water deprivation
COG category	U
BRITE	ko00000,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9350	Gcaud9350	Gracilaria caudata M_176_S67 male	gene	NODE_1027_length_14887_cov_3.970330 8173..9864 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9350.t1.stop1	Gcaud9350.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1027_length_14887_cov_3.970330 8173..8175 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9350.t1.CDS1	Gcaud9350.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1027_length_14887_cov_3.970330 8173..9864 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9350.t1.exon1	Gcaud9350.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1027_length_14887_cov_3.970330 8173..9864 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9350.t1.start1	Gcaud9350.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1027_length_14887_cov_3.970330 9862..9864 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9350.t1	Gcaud9350.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1027_length_14887_cov_3.970330 8173..9864 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1027_length_14887_cov_3.970330:8173..9864-
coding sequence from alignment at NODE_1027_length_14887_cov_3.970330:8173..9864-

mRNA sequence

>Gcaud9350.t1 ID=Gcaud9350.t1|Name=Gcaud9350.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp
MSAESCESKLSIHLSCANLRNMDFIGRSDPFALLFLDPTGSVRPARDASQ
PTPLRARSGRAGAYPARDARWQRVGMTETIYNSLNVAWASSFEISYFFER
AQKLAVDVFDRDDASEKDADLHRHDYLGSATVSVPALVRAPGQRKTLELK
IDAKPNHRCGTVTIIAENVSHSKLRIAFNPRLSAFSPRWGVATGRGPYLT
VSRPAADGDDVNARGGDMIIVWRSEMAGVASAPRSFNFAQLSMNYEKFCR
RDEELPLRFEVSYEKGGRHRVVAAATASLKECAQNEGRVALDMVRSGCLP
SPTRAATLQLGNRTMTEDRTFLDYIIGGCEMSLVVAIDFTASNGDPSQRG
TLHFFDSMEPNEYELAIRAVGDILAAYSSEQRFPAYGFGAKLPPDFHQPC
HKFSLTGSADPTCHTVDDVLNMYRQTLYSVRLSGPTHFSEVIRAAAEHAN
VEVTQSRQSYCTLLIVTDGVISDMQSTIREISLASMLPMSIVIIGVGDAD
FTDMRELDGDDREQERDIVQFVVFRQYRDTPEVLRAMVLEEIPGQLVQYM
TQRNIIPNAPPVD*

spliced messenger RNA

>Gcaud9350.t1 ID=Gcaud9350.t1|Name=Gcaud9350.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:8173..9864- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGGAGAGCTGCGAGTCCAAGCTCAGCATCCATCTGTCGTGCGC
CAACCTGCGCAACATGGACTTCATCGGCCGCTCCGACCCGTTCGCGCTGC
TGTTCCTCGACCCCACCGGCTCCGTGCGCCCCGCGCGCGACGCGTCGCAG
CCCACGCCGCTGCGCGCGCGCTCGGGGCGCGCGGGCGCGTACCCGGCACG
CGATGCGCGCTGGCAGCGCGTGGGCATGACGGAGACCATTTACAACTCGC
TCAACGTGGCGTGGGCGAGCAGTTTCGAGATCTCGTACTTCTTTGAGCGC
GCGCAGAAGCTGGCGGTGGACGTGTTTGACCGCGACGACGCCAGCGAGAA
GGACGCCGATTTGCACCGCCACGACTATCTGGGCTCGGCCACGGTGTCGG
TGCCGGCGTTGGTGAGGGCGCCGGGACAGAGGAAGACGCTGGAGCTGAAG
ATTGACGCCAAGCCGAACCATCGCTGCGGCACGGTGACCATCATTGCGGA
GAATGTGTCGCATAGCAAGCTGCGCATCGCGTTCAACCCGCGGCTGAGCG
CGTTTTCGCCGCGCTGGGGCGTGGCGACGGGGCGCGGGCCGTACTTGACC
GTGTCGCGGCCGGCGGCGGACGGCGATGATGTGAACGCCAGGGGGGGGGA
CATGATCATTGTGTGGCGCTCGGAGATGGCGGGCGTGGCGAGCGCGCCGA
GAAGCTTCAACTTTGCGCAGCTGTCGATGAACTACGAGAAGTTTTGCCGC
CGCGACGAGGAGCTGCCGCTGCGCTTCGAGGTGTCGTACGAGAAGGGCGG
CCGACACCGCGTGGTGGCGGCCGCCACCGCGTCGCTCAAGGAGTGTGCGC
AGAACGAGGGGCGCGTGGCGTTGGACATGGTGCGCTCGGGCTGTTTGCCG
TCGCCGACGCGCGCGGCGACGTTGCAGTTGGGTAACCGCACGATGACGGA
GGATCGTACGTTTCTGGACTACATTATTGGCGGCTGTGAGATGTCGTTGG
TGGTGGCGATCGACTTCACGGCGAGTAATGGCGACCCGTCGCAACGCGGC
ACGTTGCACTTCTTCGACTCGATGGAGCCCAATGAGTACGAGCTGGCGAT
TCGCGCGGTGGGCGACATTCTGGCGGCGTACAGCTCGGAGCAACGCTTCC
CGGCGTACGGGTTTGGTGCAAAGCTGCCGCCGGATTTCCACCAGCCGTGC
CACAAGTTTTCGTTGACGGGCAGCGCGGATCCGACGTGTCACACCGTGGA
CGATGTGCTCAACATGTATCGACAGACGCTGTACAGCGTGCGACTGTCCG
GGCCGACGCACTTTTCGGAGGTGATTCGCGCGGCGGCGGAGCACGCGAAC
GTGGAGGTGACGCAGAGTCGACAGTCGTACTGCACGCTGCTGATTGTGAC
CGACGGCGTGATCAGCGACATGCAGAGCACCATCCGCGAGATCTCGCTGG
CCAGCATGTTGCCCATGTCGATTGTGATCATCGGCGTGGGCGATGCGGAC
TTCACGGACATGCGCGAGTTGGACGGCGATGACCGCGAACAGGAGCGCGA
CATTGTGCAGTTTGTGGTGTTTCGACAGTACCGCGACACGCCGGAGGTGC
TGAGGGCGATGGTGCTGGAGGAGATCCCGGGGCAGTTGGTGCAGTACATG
ACGCAACGCAACATCATACCCAACGCGCCGCCCGTGGACTGA

protein sequence of Gcaud9350.t1

>Gcaud9350.t1 ID=Gcaud9350.t1|Name=Gcaud9350.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=564bp
MSAESCESKLSIHLSCANLRNMDFIGRSDPFALLFLDPTGSVRPARDASQ
PTPLRARSGRAGAYPARDARWQRVGMTETIYNSLNVAWASSFEISYFFER
AQKLAVDVFDRDDASEKDADLHRHDYLGSATVSVPALVRAPGQRKTLELK
IDAKPNHRCGTVTIIAENVSHSKLRIAFNPRLSAFSPRWGVATGRGPYLT
VSRPAADGDDVNARGGDMIIVWRSEMAGVASAPRSFNFAQLSMNYEKFCR
RDEELPLRFEVSYEKGGRHRVVAAATASLKECAQNEGRVALDMVRSGCLP
SPTRAATLQLGNRTMTEDRTFLDYIIGGCEMSLVVAIDFTASNGDPSQRG
TLHFFDSMEPNEYELAIRAVGDILAAYSSEQRFPAYGFGAKLPPDFHQPC
HKFSLTGSADPTCHTVDDVLNMYRQTLYSVRLSGPTHFSEVIRAAAEHAN
VEVTQSRQSYCTLLIVTDGVISDMQSTIREISLASMLPMSIVIIGVGDAD
FTDMRELDGDDREQERDIVQFVVFRQYRDTPEVLRAMVLEEIPGQLVQYM
TQRNIIPNAPPVD*

mRNA from alignment at NODE_1027_length_14887_cov_3.970330:8173..9864-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9350.t1 ID=Gcaud9350.t1|Name=Gcaud9350.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:8173..9864- (Gracilaria caudata M_176_S67 male)
ATGTCGGCGGAGAGCTGCGAGTCCAAGCTCAGCATCCATCTGTCGTGCGC
CAACCTGCGCAACATGGACTTCATCGGCCGCTCCGACCCGTTCGCGCTGC
TGTTCCTCGACCCCACCGGCTCCGTGCGCCCCGCGCGCGACGCGTCGCAG
CCCACGCCGCTGCGCGCGCGCTCGGGGCGCGCGGGCGCGTACCCGGCACG
CGATGCGCGCTGGCAGCGCGTGGGCATGACGGAGACCATTTACAACTCGC
TCAACGTGGCGTGGGCGAGCAGTTTCGAGATCTCGTACTTCTTTGAGCGC
GCGCAGAAGCTGGCGGTGGACGTGTTTGACCGCGACGACGCCAGCGAGAA
GGACGCCGATTTGCACCGCCACGACTATCTGGGCTCGGCCACGGTGTCGG
TGCCGGCGTTGGTGAGGGCGCCGGGACAGAGGAAGACGCTGGAGCTGAAG
ATTGACGCCAAGCCGAACCATCGCTGCGGCACGGTGACCATCATTGCGGA
GAATGTGTCGCATAGCAAGCTGCGCATCGCGTTCAACCCGCGGCTGAGCG
CGTTTTCGCCGCGCTGGGGCGTGGCGACGGGGCGCGGGCCGTACTTGACC
GTGTCGCGGCCGGCGGCGGACGGCGATGATGTGAACGCCAGGGGGGGGGA
CATGATCATTGTGTGGCGCTCGGAGATGGCGGGCGTGGCGAGCGCGCCGA
GAAGCTTCAACTTTGCGCAGCTGTCGATGAACTACGAGAAGTTTTGCCGC
CGCGACGAGGAGCTGCCGCTGCGCTTCGAGGTGTCGTACGAGAAGGGCGG
CCGACACCGCGTGGTGGCGGCCGCCACCGCGTCGCTCAAGGAGTGTGCGC
AGAACGAGGGGCGCGTGGCGTTGGACATGGTGCGCTCGGGCTGTTTGCCG
TCGCCGACGCGCGCGGCGACGTTGCAGTTGGGTAACCGCACGATGACGGA
GGATCGTACGTTTCTGGACTACATTATTGGCGGCTGTGAGATGTCGTTGG
TGGTGGCGATCGACTTCACGGCGAGTAATGGCGACCCGTCGCAACGCGGC
ACGTTGCACTTCTTCGACTCGATGGAGCCCAATGAGTACGAGCTGGCGAT
TCGCGCGGTGGGCGACATTCTGGCGGCGTACAGCTCGGAGCAACGCTTCC
CGGCGTACGGGTTTGGTGCAAAGCTGCCGCCGGATTTCCACCAGCCGTGC
CACAAGTTTTCGTTGACGGGCAGCGCGGATCCGACGTGTCACACCGTGGA
CGATGTGCTCAACATGTATCGACAGACGCTGTACAGCGTGCGACTGTCCG
GGCCGACGCACTTTTCGGAGGTGATTCGCGCGGCGGCGGAGCACGCGAAC
GTGGAGGTGACGCAGAGTCGACAGTCGTACTGCACGCTGCTGATTGTGAC
CGACGGCGTGATCAGCGACATGCAGAGCACCATCCGCGAGATCTCGCTGG
CCAGCATGTTGCCCATGTCGATTGTGATCATCGGCGTGGGCGATGCGGAC
TTCACGGACATGCGCGAGTTGGACGGCGATGACCGCGAACAGGAGCGCGA
CATTGTGCAGTTTGTGGTGTTTCGACAGTACCGCGACACGCCGGAGGTGC
TGAGGGCGATGGTGCTGGAGGAGATCCCGGGGCAGTTGGTGCAGTACATG
ACGCAACGCAACATCATACCCAACGCGCCGCCCGTGGACTGA

Coding sequence (CDS) from alignment at NODE_1027_length_14887_cov_3.970330:8173..9864-

>Gcaud9350.t1 ID=Gcaud9350.t1|Name=Gcaud9350.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1692bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:8173..9864- (Gracilaria caudata M_176_S67 male)
ATGTCGGCGGAGAGCTGCGAGTCCAAGCTCAGCATCCATCTGTCGTGCGC
CAACCTGCGCAACATGGACTTCATCGGCCGCTCCGACCCGTTCGCGCTGC
TGTTCCTCGACCCCACCGGCTCCGTGCGCCCCGCGCGCGACGCGTCGCAG
CCCACGCCGCTGCGCGCGCGCTCGGGGCGCGCGGGCGCGTACCCGGCACG
CGATGCGCGCTGGCAGCGCGTGGGCATGACGGAGACCATTTACAACTCGC
TCAACGTGGCGTGGGCGAGCAGTTTCGAGATCTCGTACTTCTTTGAGCGC
GCGCAGAAGCTGGCGGTGGACGTGTTTGACCGCGACGACGCCAGCGAGAA
GGACGCCGATTTGCACCGCCACGACTATCTGGGCTCGGCCACGGTGTCGG
TGCCGGCGTTGGTGAGGGCGCCGGGACAGAGGAAGACGCTGGAGCTGAAG
ATTGACGCCAAGCCGAACCATCGCTGCGGCACGGTGACCATCATTGCGGA
GAATGTGTCGCATAGCAAGCTGCGCATCGCGTTCAACCCGCGGCTGAGCG
CGTTTTCGCCGCGCTGGGGCGTGGCGACGGGGCGCGGGCCGTACTTGACC
GTGTCGCGGCCGGCGGCGGACGGCGATGATGTGAACGCCAGGGGGGGGGA
CATGATCATTGTGTGGCGCTCGGAGATGGCGGGCGTGGCGAGCGCGCCGA
GAAGCTTCAACTTTGCGCAGCTGTCGATGAACTACGAGAAGTTTTGCCGC
CGCGACGAGGAGCTGCCGCTGCGCTTCGAGGTGTCGTACGAGAAGGGCGG
CCGACACCGCGTGGTGGCGGCCGCCACCGCGTCGCTCAAGGAGTGTGCGC
AGAACGAGGGGCGCGTGGCGTTGGACATGGTGCGCTCGGGCTGTTTGCCG
TCGCCGACGCGCGCGGCGACGTTGCAGTTGGGTAACCGCACGATGACGGA
GGATCGTACGTTTCTGGACTACATTATTGGCGGCTGTGAGATGTCGTTGG
TGGTGGCGATCGACTTCACGGCGAGTAATGGCGACCCGTCGCAACGCGGC
ACGTTGCACTTCTTCGACTCGATGGAGCCCAATGAGTACGAGCTGGCGAT
TCGCGCGGTGGGCGACATTCTGGCGGCGTACAGCTCGGAGCAACGCTTCC
CGGCGTACGGGTTTGGTGCAAAGCTGCCGCCGGATTTCCACCAGCCGTGC
CACAAGTTTTCGTTGACGGGCAGCGCGGATCCGACGTGTCACACCGTGGA
CGATGTGCTCAACATGTATCGACAGACGCTGTACAGCGTGCGACTGTCCG
GGCCGACGCACTTTTCGGAGGTGATTCGCGCGGCGGCGGAGCACGCGAAC
GTGGAGGTGACGCAGAGTCGACAGTCGTACTGCACGCTGCTGATTGTGAC
CGACGGCGTGATCAGCGACATGCAGAGCACCATCCGCGAGATCTCGCTGG
CCAGCATGTTGCCCATGTCGATTGTGATCATCGGCGTGGGCGATGCGGAC
TTCACGGACATGCGCGAGTTGGACGGCGATGACCGCGAACAGGAGCGCGA
CATTGTGCAGTTTGTGGTGTTTCGACAGTACCGCGACACGCCGGAGGTGC
TGAGGGCGATGGTGCTGGAGGAGATCCCGGGGCAGTTGGTGCAGTACATG
ACGCAACGCAACATCATACCCAACGCGCCGCCCGTGGACTGA