Gcaud7488.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7488.t1
Unique Name	Gcaud7488.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	339

Homology

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BLAST of Gcaud7488.t1 vs. uniprot
Match: A0A2V3IKB9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKB9_9FLOR)

HSP 1 Score: 249 bits (636), Expect = 5.140e-77
Identity = 148/267 (55.43%), Postives = 181/267 (67.79%), Query Frame = 0

Query:    1 MAKFPPAPPYHVDLQSDRIFSPITSSAEESQAQETLVKGSLHQLPRKMPKKEPPIDSP-RGRVG--------ETLRNPLSIVFGGIQRDPPLFVRRKSARKAEDDDKDKEAAVTALELSIMGSALVLTLGLQVQEVVGSRGGFGNSTQNAEVRFLFVGASALSFALGFYSIVTAAVMLLSIVSTPNMNTKAMLKRMSGWLLAPRMCTLAAAGCLAIKTLIAHFLGLEKSASILGAVVIGIGLLFTSIATAMIYKCLAQFSEGDTHCE 258
            M + PPAP  H+ L S   FSPI+SS E+           +HQ+P  + +   P DS  + RVG        +T R+ LS+V GG+ RDPPLFVRR++               TALEL+IMGSALVLTL LQVQEVVG RGGF N TQ  E ++LFVG SALSFA GFYSIVTAAVML SIVSTP+++T+ MLK++SGW+ APR+CTLAAAGCL I TLIA FLG+EK+ SILGAVV GIG+  T++ATA I + LA F   D  C+
Sbjct:   23 MVRIPPAPTGHLVLPSSDTFSPISSSVEQEH---------VHQIPVTVEQPSRPRDSDQKERVGLREPTREVQTSRSTLSLVLGGLSRDPPLFVRRRTTEXXXXXXXXXXXXATALELAIMGSALVLTLCLQVQEVVGGRGGFDNITQATEAQYLFVGTSALSFAFGFYSIVTAAVMLQSIVSTPSIHTRPMLKKLSGWIHAPRLCTLAAAGCLGITTLIAFFLGIEKNVSILGAVVTGIGITLTAVATASILRLLADFDPKDAPCD 280

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BLAST of Gcaud7488.t1 vs. uniprot
Match: R7QTJ8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTJ8_CHOCR)

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-9
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0

Query:  100 KEAAVTALELSIMGSALVLTLGLQVQEVVGSRGGFGNSTQNAEVRFLFVGASALSFALGFYSIVTAAVMLLSIVSTP 176
            K A  +ALE ++MGSALVLT+ LQ+QEVVG RGG      +   R+ FV ASALSFAL FY+I+++ V+LL +   P
Sbjct:  117 KLAIGSALEATLMGSALVLTVSLQIQEVVGGRGGLKPDGGHYVARYTFVIASALSFALCFYAIMSSFVLLLELSPCP 193

The following BLAST results are available for this feature:

BLAST of Gcaud7488.t1 vs. uniprot

BLAST of Gcaud7488.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IKB9_9FLOR	5.140e-77	55.43	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QTJ8_CHOCR	1.000e-9	53.25	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..38
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 102..125
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 216..220
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 145..172
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 126..144
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 245..338
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 192..215
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..101
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 173..191
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 221..244
None	No IPR available	TMHMM	TMhelix		coord: 222..244
None	No IPR available	TMHMM	TMhelix		coord: 195..217
None	No IPR available	TMHMM	TMhelix		coord: 152..174

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1257_length_12097_cov_4.624105	contig	NODE_1257_length_12097_cov_4.624105:8178..9495 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7488.t1	Gcaud7488.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1257_length_12097_cov_4.624105 8178..9495 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7488.t1 ID=Gcaud7488.t1|Name=Gcaud7488.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=339bp
MAKFPPAPPYHVDLQSDRIFSPITSSAEESQAQETLVKGSLHQLPRKMPK
KEPPIDSPRGRVGETLRNPLSIVFGGIQRDPPLFVRRKSARKAEDDDKDK
EAAVTALELSIMGSALVLTLGLQVQEVVGSRGGFGNSTQNAEVRFLFVGA
SALSFALGFYSIVTAAVMLLSIVSTPNMNTKAMLKRMSGWLLAPRMCTLA
AAGCLAIKTLIAHFLGLEKSASILGAVVIGIGLLFTSIATAMIYKCLAQF
SEGDTHCERDVHKDDGMDMCHDDLGEEDCEASLGETSQLQQNIMSEERVF
GNVDRSPTSMTLQASMPNQMDHTASIPVATSCLQMRQR*