Gcaud10214.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10214.t1
Unique Name	Gcaud10214.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	308

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1251_length_12131_cov_4.382475	contig	NODE_1251_length_12131_cov_4.382475:5111..6034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10214	Gcaud10214	Gracilaria caudata M_176_S67 male	gene	NODE_1251_length_12131_cov_4.382475 5111..6034 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10214.t1.start1	Gcaud10214.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1251_length_12131_cov_4.382475 5111..5113 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10214.t1.CDS1	Gcaud10214.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1251_length_12131_cov_4.382475 5111..6034 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10214.t1.exon1	Gcaud10214.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1251_length_12131_cov_4.382475 5111..6034 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10214.t1.stop1	Gcaud10214.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1251_length_12131_cov_4.382475 6032..6034 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10214.t1	Gcaud10214.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1251_length_12131_cov_4.382475 5111..6034 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1251_length_12131_cov_4.382475:5111..6034+
coding sequence from alignment at NODE_1251_length_12131_cov_4.382475:5111..6034+

mRNA sequence

>Gcaud10214.t1 ID=Gcaud10214.t1|Name=Gcaud10214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=308bp
MNSLPKLKLEGLSQPEADDSIASPVTPATAENETGATGNGFGNKRRRIGG
LPISMLVNEKDDDTPVSYPLEYQPPLPIKPMTPASPKLPPILYQMSEFVT
QLGERAVEGPLPSFKSLGLPTIEHPTAAAESKNSTDASQSQSKASTAKPD
EIEAPGHDETVASDSGKDTACTEPEREPKAPRRKRTRAERDMPITTEPEI
ESLIKTLREKEQSQSGEVKQRGEAESSEPQAQEENKAQAQTAGTTTANSL
SLGVSKSAKVTKPRKNRRGRPNGDDRPRLHACPTCQRRFHQQSGVANHYR
IVHFKDK*

spliced messenger RNA

>Gcaud10214.t1 ID=Gcaud10214.t1|Name=Gcaud10214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=924bp|location=Sequence derived from alignment at NODE_1251_length_12131_cov_4.382475:5111..6034+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCTCTCCCCAAGCTGAAATTGGAAGGTCTTTCGCAGCCGGAAGC
GGACGACAGCATTGCTTCTCCGGTGACGCCAGCTACTGCCGAGAATGAAA
CCGGCGCGACAGGAAATGGCTTCGGGAACAAACGTCGCCGCATCGGAGGT
CTTCCGATAAGCATGTTGGTAAACGAAAAGGACGATGATACTCCGGTATC
GTACCCTCTAGAGTATCAGCCTCCTCTCCCAATCAAGCCGATGACGCCAG
CCTCGCCCAAGCTTCCACCCATACTCTACCAAATGTCAGAGTTTGTGACC
CAGCTTGGGGAACGAGCGGTGGAAGGCCCTTTGCCATCATTTAAATCGCT
CGGGCTGCCGACAATCGAGCACCCGACGGCTGCGGCTGAGTCAAAGAATT
CGACAGATGCGTCCCAATCTCAGTCAAAGGCATCAACCGCAAAGCCAGAC
GAGATTGAAGCTCCTGGACACGACGAGACTGTTGCCTCGGACAGCGGAAA
AGACACGGCTTGCACAGAACCCGAGCGGGAACCCAAAGCGCCGCGTCGAA
AACGTACCCGCGCCGAACGTGACATGCCAATCACAACGGAGCCGGAGATT
GAAAGCCTCATCAAGACGCTACGTGAGAAGGAGCAAAGCCAAAGTGGAGA
AGTGAAACAACGTGGGGAGGCCGAGTCTTCTGAACCTCAAGCACAAGAAG
AAAATAAAGCACAGGCTCAAACTGCTGGGACGACAACCGCGAACAGTTTG
AGCCTTGGAGTGTCGAAGAGCGCAAAGGTGACGAAGCCGAGGAAGAACCG
GAGGGGCCGTCCCAATGGTGACGACAGACCGCGACTACACGCTTGCCCCA
CCTGTCAACGGCGCTTCCACCAACAGAGTGGGGTGGCAAACCACTATCGA
ATCGTGCATTTCAAGGACAAATGA

protein sequence of Gcaud10214.t1

>Gcaud10214.t1 ID=Gcaud10214.t1|Name=Gcaud10214.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=308bp
MNSLPKLKLEGLSQPEADDSIASPVTPATAENETGATGNGFGNKRRRIGG
LPISMLVNEKDDDTPVSYPLEYQPPLPIKPMTPASPKLPPILYQMSEFVT
QLGERAVEGPLPSFKSLGLPTIEHPTAAAESKNSTDASQSQSKASTAKPD
EIEAPGHDETVASDSGKDTACTEPEREPKAPRRKRTRAERDMPITTEPEI
ESLIKTLREKEQSQSGEVKQRGEAESSEPQAQEENKAQAQTAGTTTANSL
SLGVSKSAKVTKPRKNRRGRPNGDDRPRLHACPTCQRRFHQQSGVANHYR
IVHFKDK*

mRNA from alignment at NODE_1251_length_12131_cov_4.382475:5111..6034+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10214.t1 ID=Gcaud10214.t1|Name=Gcaud10214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=924bp|location=Sequence derived from alignment at NODE_1251_length_12131_cov_4.382475:5111..6034+ (Gracilaria caudata M_176_S67 male)
ATGAACTCTCTCCCCAAGCTGAAATTGGAAGGTCTTTCGCAGCCGGAAGC
GGACGACAGCATTGCTTCTCCGGTGACGCCAGCTACTGCCGAGAATGAAA
CCGGCGCGACAGGAAATGGCTTCGGGAACAAACGTCGCCGCATCGGAGGT
CTTCCGATAAGCATGTTGGTAAACGAAAAGGACGATGATACTCCGGTATC
GTACCCTCTAGAGTATCAGCCTCCTCTCCCAATCAAGCCGATGACGCCAG
CCTCGCCCAAGCTTCCACCCATACTCTACCAAATGTCAGAGTTTGTGACC
CAGCTTGGGGAACGAGCGGTGGAAGGCCCTTTGCCATCATTTAAATCGCT
CGGGCTGCCGACAATCGAGCACCCGACGGCTGCGGCTGAGTCAAAGAATT
CGACAGATGCGTCCCAATCTCAGTCAAAGGCATCAACCGCAAAGCCAGAC
GAGATTGAAGCTCCTGGACACGACGAGACTGTTGCCTCGGACAGCGGAAA
AGACACGGCTTGCACAGAACCCGAGCGGGAACCCAAAGCGCCGCGTCGAA
AACGTACCCGCGCCGAACGTGACATGCCAATCACAACGGAGCCGGAGATT
GAAAGCCTCATCAAGACGCTACGTGAGAAGGAGCAAAGCCAAAGTGGAGA
AGTGAAACAACGTGGGGAGGCCGAGTCTTCTGAACCTCAAGCACAAGAAG
AAAATAAAGCACAGGCTCAAACTGCTGGGACGACAACCGCGAACAGTTTG
AGCCTTGGAGTGTCGAAGAGCGCAAAGGTGACGAAGCCGAGGAAGAACCG
GAGGGGCCGTCCCAATGGTGACGACAGACCGCGACTACACGCTTGCCCCA
CCTGTCAACGGCGCTTCCACCAACAGAGTGGGGTGGCAAACCACTATCGA
ATCGTGCATTTCAAGGACAAATGA

Coding sequence (CDS) from alignment at NODE_1251_length_12131_cov_4.382475:5111..6034+

>Gcaud10214.t1 ID=Gcaud10214.t1|Name=Gcaud10214.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=924bp|location=Sequence derived from alignment at NODE_1251_length_12131_cov_4.382475:5111..6034+ (Gracilaria caudata M_176_S67 male)
ATGAACTCTCTCCCCAAGCTGAAATTGGAAGGTCTTTCGCAGCCGGAAGC
GGACGACAGCATTGCTTCTCCGGTGACGCCAGCTACTGCCGAGAATGAAA
CCGGCGCGACAGGAAATGGCTTCGGGAACAAACGTCGCCGCATCGGAGGT
CTTCCGATAAGCATGTTGGTAAACGAAAAGGACGATGATACTCCGGTATC
GTACCCTCTAGAGTATCAGCCTCCTCTCCCAATCAAGCCGATGACGCCAG
CCTCGCCCAAGCTTCCACCCATACTCTACCAAATGTCAGAGTTTGTGACC
CAGCTTGGGGAACGAGCGGTGGAAGGCCCTTTGCCATCATTTAAATCGCT
CGGGCTGCCGACAATCGAGCACCCGACGGCTGCGGCTGAGTCAAAGAATT
CGACAGATGCGTCCCAATCTCAGTCAAAGGCATCAACCGCAAAGCCAGAC
GAGATTGAAGCTCCTGGACACGACGAGACTGTTGCCTCGGACAGCGGAAA
AGACACGGCTTGCACAGAACCCGAGCGGGAACCCAAAGCGCCGCGTCGAA
AACGTACCCGCGCCGAACGTGACATGCCAATCACAACGGAGCCGGAGATT
GAAAGCCTCATCAAGACGCTACGTGAGAAGGAGCAAAGCCAAAGTGGAGA
AGTGAAACAACGTGGGGAGGCCGAGTCTTCTGAACCTCAAGCACAAGAAG
AAAATAAAGCACAGGCTCAAACTGCTGGGACGACAACCGCGAACAGTTTG
AGCCTTGGAGTGTCGAAGAGCGCAAAGGTGACGAAGCCGAGGAAGAACCG
GAGGGGCCGTCCCAATGGTGACGACAGACCGCGACTACACGCTTGCCCCA
CCTGTCAACGGCGCTTCCACCAACAGAGTGGGGTGGCAAACCACTATCGA
ATCGTGCATTTCAAGGACAAATGA