Gcaud231.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud231.t1
Unique NameGcaud231.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length353
Homology
[Close]
BLAST of Gcaud231.t1 vs. uniprot
Match: A0A2V3IQG3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQG3_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 7.430e-61
Identity = 126/349 (36.10%), Postives = 190/349 (54.44%), Query Frame = 0 
Query:    1 MFIPLRAQHVSLIITFSFIVAELGLLWTAKTLNGIVENRSLHSKRGVLLHRHRRRLKFISLTILLSFIGLEIFASSLSQTAFMDINTVEECLSMVPITQQRSIGDQLVDRDLRAELISIKCLKASGKNFGQKLGNISLETLDISCEEKQFYWYENNERVNRSTSRGISSCRTTSFTNESGEQEDDFEDDGISSEIERCVWHEFDAGLLYISERDY--FSMRKTYSSFVTGFSVDVRPLINSTMDRYLDLREKGQEREELHVRRMLFTNTYRTNCTFKVGEVEGTEVPNIVLGFVIGTWSSILIFAVTLGLVYRKVSSADLSNPFFWARRVFKSDIDSMRELRVGLSEDL 347
            MFIP+RAQ VSL++T  F+  EL +LW AKT+  + E + L  K  + L++H  R +  +  +LLSF+ LE   S+L+QT+F D     +CL +VPITQ     D  V  D R+E I  +CL  +   F Q+LG +SLE  D++CE++ +Y Y N++RV RSTS    +C+  S  N         E + +  E   CV+HE +   LY+S + +      +  S  VT    D+ P +   +DRYL    K  E EELH+R ++FT+   T C+F  G+ EG  VP+ +L  V   W   ++ A+   L+ RK +   LS+PFFWA    +      + +RV  + D+
Sbjct:    1 MFIPIRAQIVSLVVTLVFVATELCVLWVAKTITVLFETQKLCRKVTIGLYQHCLRRRVTAAVVLLSFLALETLTSTLTQTSFRDEKVQRDCLKLVPITQT---SDPNVFHDQRSESILYRCLNFNRDIFEQRLGGVSLEPSDVTCEDQPYYSYNNSQRVRRSTSSATMTCKNISSLN--------LERETVVHEW--CVFHEVERDTLYMSAQPFPESEAEEEGSFIVTKVHTDITPFVPKVVDRYLHFFVKDSETEELHLRGVMFTDLVETQCSFSSGKTEGVTVPDFILVTVAALWLLAILGAIFTKLLTRKKTLIYLSDPFFWANISLEKVTIPKKNIRVDENGDI 336
The following BLAST results are available for this feature:
BLAST of Gcaud231.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQG3_9FLOR7.430e-6136.10Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..77
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 287..310
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 78..286
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 311..352
NoneNo IPR availableTMHMMTMhelixcoord: 288..310
NoneNo IPR availableTMHMMTMhelixcoord: 10..29
NoneNo IPR availableTMHMMTMhelixcoord: 58..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1244_length_12191_cov_4.451901contigNODE_1244_length_12191_cov_4.451901:3998..5056 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud231.t1Gcaud231.t1Gracilaria caudata M_176_S67 malemRNANODE_1244_length_12191_cov_4.451901 3998..5056 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud231.t1 ID=Gcaud231.t1|Name=Gcaud231.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=353bp
MFIPLRAQHVSLIITFSFIVAELGLLWTAKTLNGIVENRSLHSKRGVLLH
RHRRRLKFISLTILLSFIGLEIFASSLSQTAFMDINTVEECLSMVPITQQ
RSIGDQLVDRDLRAELISIKCLKASGKNFGQKLGNISLETLDISCEEKQF
YWYENNERVNRSTSRGISSCRTTSFTNESGEQEDDFEDDGISSEIERCVW
HEFDAGLLYISERDYFSMRKTYSSFVTGFSVDVRPLINSTMDRYLDLREK
GQEREELHVRRMLFTNTYRTNCTFKVGEVEGTEVPNIVLGFVIGTWSSIL
IFAVTLGLVYRKVSSADLSNPFFWARRVFKSDIDSMRELRVGLSEDLELV
QL*
back to top