Gcaud231.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud231.t1
Unique NameGcaud231.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1244_length_12191_cov_4.451901contigNODE_1244_length_12191_cov_4.451901:3998..5056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud231Gcaud231Gracilaria caudata M_176_S67 malegeneNODE_1244_length_12191_cov_4.451901 3998..5056 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud231.t1.stop1Gcaud231.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1244_length_12191_cov_4.451901 3998..4000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud231.t1.CDS1Gcaud231.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1244_length_12191_cov_4.451901 3998..5056 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud231.t1.exon1Gcaud231.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1244_length_12191_cov_4.451901 3998..5056 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud231.t1.start1Gcaud231.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1244_length_12191_cov_4.451901 5054..5056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud231.t1Gcaud231.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1244_length_12191_cov_4.451901 3998..5056 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud231.t1 ID=Gcaud231.t1|Name=Gcaud231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=353bp
MFIPLRAQHVSLIITFSFIVAELGLLWTAKTLNGIVENRSLHSKRGVLLH
RHRRRLKFISLTILLSFIGLEIFASSLSQTAFMDINTVEECLSMVPITQQ
RSIGDQLVDRDLRAELISIKCLKASGKNFGQKLGNISLETLDISCEEKQF
YWYENNERVNRSTSRGISSCRTTSFTNESGEQEDDFEDDGISSEIERCVW
HEFDAGLLYISERDYFSMRKTYSSFVTGFSVDVRPLINSTMDRYLDLREK
GQEREELHVRRMLFTNTYRTNCTFKVGEVEGTEVPNIVLGFVIGTWSSIL
IFAVTLGLVYRKVSSADLSNPFFWARRVFKSDIDSMRELRVGLSEDLELV
QL*
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spliced messenger RNA

>Gcaud231.t1 ID=Gcaud231.t1|Name=Gcaud231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_1244_length_12191_cov_4.451901:3998..5056- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATTCCACTCCGAGCACAACATGTGAGTCTCATAATCACATTTTC
TTTTATCGTTGCAGAGCTTGGTTTATTATGGACGGCGAAGACACTGAACG
GCATAGTTGAGAATCGCAGTCTTCACTCGAAGCGAGGTGTATTGCTTCAC
CGCCATCGTCGCCGATTGAAGTTCATATCGCTCACGATCTTACTCTCATT
CATCGGGTTGGAAATATTCGCTTCCTCCTTGTCCCAGACTGCTTTTATGG
ACATCAACACAGTTGAAGAGTGTCTATCCATGGTTCCTATTACACAACAG
CGTTCTATTGGGGATCAATTGGTTGATCGGGATTTGAGAGCTGAGCTCAT
TTCGATCAAGTGCTTAAAGGCGTCTGGCAAAAACTTCGGGCAGAAGCTGG
GAAACATCAGCCTTGAAACACTGGATATTTCCTGTGAGGAAAAACAGTTT
TACTGGTACGAAAACAACGAACGAGTGAACAGATCAACCTCGCGAGGGAT
CAGTAGCTGCAGGACGACGAGCTTTACGAACGAATCAGGGGAGCAGGAAG
ACGATTTTGAGGATGACGGTATCTCCTCAGAGATTGAGCGGTGTGTCTGG
CATGAGTTTGATGCAGGTTTGTTGTACATAAGCGAACGAGATTACTTCTC
AATGAGGAAAACATACAGCTCCTTCGTCACAGGATTTTCTGTTGACGTGC
GACCTTTGATTAATAGTACTATGGATCGGTATCTTGACCTTCGAGAAAAG
GGTCAGGAAAGGGAGGAATTGCATGTGAGAAGAATGCTGTTCACGAACAC
GTATCGGACGAACTGCACGTTCAAGGTTGGCGAAGTGGAGGGGACGGAGG
TGCCGAACATTGTTTTGGGGTTTGTAATTGGTACTTGGTCGTCGATTCTC
ATCTTCGCCGTGACTTTGGGTTTAGTATATCGCAAAGTATCGAGTGCTGA
TTTGAGCAATCCATTCTTTTGGGCCCGCAGAGTGTTCAAGTCGGACATTG
ATTCCATGCGGGAATTGAGGGTGGGGCTATCTGAAGATCTTGAACTCGTG
CAACTGTAG
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protein sequence of Gcaud231.t1

>Gcaud231.t1 ID=Gcaud231.t1|Name=Gcaud231.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=353bp
MFIPLRAQHVSLIITFSFIVAELGLLWTAKTLNGIVENRSLHSKRGVLLH
RHRRRLKFISLTILLSFIGLEIFASSLSQTAFMDINTVEECLSMVPITQQ
RSIGDQLVDRDLRAELISIKCLKASGKNFGQKLGNISLETLDISCEEKQF
YWYENNERVNRSTSRGISSCRTTSFTNESGEQEDDFEDDGISSEIERCVW
HEFDAGLLYISERDYFSMRKTYSSFVTGFSVDVRPLINSTMDRYLDLREK
GQEREELHVRRMLFTNTYRTNCTFKVGEVEGTEVPNIVLGFVIGTWSSIL
IFAVTLGLVYRKVSSADLSNPFFWARRVFKSDIDSMRELRVGLSEDLELV
QL*
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mRNA from alignment at NODE_1244_length_12191_cov_4.451901:3998..5056-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud231.t1 ID=Gcaud231.t1|Name=Gcaud231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_1244_length_12191_cov_4.451901:3998..5056- (Gracilaria caudata M_176_S67 male)
ATGTTCATTCCACTCCGAGCACAACATGTGAGTCTCATAATCACATTTTC
TTTTATCGTTGCAGAGCTTGGTTTATTATGGACGGCGAAGACACTGAACG
GCATAGTTGAGAATCGCAGTCTTCACTCGAAGCGAGGTGTATTGCTTCAC
CGCCATCGTCGCCGATTGAAGTTCATATCGCTCACGATCTTACTCTCATT
CATCGGGTTGGAAATATTCGCTTCCTCCTTGTCCCAGACTGCTTTTATGG
ACATCAACACAGTTGAAGAGTGTCTATCCATGGTTCCTATTACACAACAG
CGTTCTATTGGGGATCAATTGGTTGATCGGGATTTGAGAGCTGAGCTCAT
TTCGATCAAGTGCTTAAAGGCGTCTGGCAAAAACTTCGGGCAGAAGCTGG
GAAACATCAGCCTTGAAACACTGGATATTTCCTGTGAGGAAAAACAGTTT
TACTGGTACGAAAACAACGAACGAGTGAACAGATCAACCTCGCGAGGGAT
CAGTAGCTGCAGGACGACGAGCTTTACGAACGAATCAGGGGAGCAGGAAG
ACGATTTTGAGGATGACGGTATCTCCTCAGAGATTGAGCGGTGTGTCTGG
CATGAGTTTGATGCAGGTTTGTTGTACATAAGCGAACGAGATTACTTCTC
AATGAGGAAAACATACAGCTCCTTCGTCACAGGATTTTCTGTTGACGTGC
GACCTTTGATTAATAGTACTATGGATCGGTATCTTGACCTTCGAGAAAAG
GGTCAGGAAAGGGAGGAATTGCATGTGAGAAGAATGCTGTTCACGAACAC
GTATCGGACGAACTGCACGTTCAAGGTTGGCGAAGTGGAGGGGACGGAGG
TGCCGAACATTGTTTTGGGGTTTGTAATTGGTACTTGGTCGTCGATTCTC
ATCTTCGCCGTGACTTTGGGTTTAGTATATCGCAAAGTATCGAGTGCTGA
TTTGAGCAATCCATTCTTTTGGGCCCGCAGAGTGTTCAAGTCGGACATTG
ATTCCATGCGGGAATTGAGGGTGGGGCTATCTGAAGATCTTGAACTCGTG
CAACTGTAG
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Coding sequence (CDS) from alignment at NODE_1244_length_12191_cov_4.451901:3998..5056-

>Gcaud231.t1 ID=Gcaud231.t1|Name=Gcaud231.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1059bp|location=Sequence derived from alignment at NODE_1244_length_12191_cov_4.451901:3998..5056- (Gracilaria caudata M_176_S67 male)
ATGTTCATTCCACTCCGAGCACAACATGTGAGTCTCATAATCACATTTTC
TTTTATCGTTGCAGAGCTTGGTTTATTATGGACGGCGAAGACACTGAACG
GCATAGTTGAGAATCGCAGTCTTCACTCGAAGCGAGGTGTATTGCTTCAC
CGCCATCGTCGCCGATTGAAGTTCATATCGCTCACGATCTTACTCTCATT
CATCGGGTTGGAAATATTCGCTTCCTCCTTGTCCCAGACTGCTTTTATGG
ACATCAACACAGTTGAAGAGTGTCTATCCATGGTTCCTATTACACAACAG
CGTTCTATTGGGGATCAATTGGTTGATCGGGATTTGAGAGCTGAGCTCAT
TTCGATCAAGTGCTTAAAGGCGTCTGGCAAAAACTTCGGGCAGAAGCTGG
GAAACATCAGCCTTGAAACACTGGATATTTCCTGTGAGGAAAAACAGTTT
TACTGGTACGAAAACAACGAACGAGTGAACAGATCAACCTCGCGAGGGAT
CAGTAGCTGCAGGACGACGAGCTTTACGAACGAATCAGGGGAGCAGGAAG
ACGATTTTGAGGATGACGGTATCTCCTCAGAGATTGAGCGGTGTGTCTGG
CATGAGTTTGATGCAGGTTTGTTGTACATAAGCGAACGAGATTACTTCTC
AATGAGGAAAACATACAGCTCCTTCGTCACAGGATTTTCTGTTGACGTGC
GACCTTTGATTAATAGTACTATGGATCGGTATCTTGACCTTCGAGAAAAG
GGTCAGGAAAGGGAGGAATTGCATGTGAGAAGAATGCTGTTCACGAACAC
GTATCGGACGAACTGCACGTTCAAGGTTGGCGAAGTGGAGGGGACGGAGG
TGCCGAACATTGTTTTGGGGTTTGTAATTGGTACTTGGTCGTCGATTCTC
ATCTTCGCCGTGACTTTGGGTTTAGTATATCGCAAAGTATCGAGTGCTGA
TTTGAGCAATCCATTCTTTTGGGCCCGCAGAGTGTTCAAGTCGGACATTG
ATTCCATGCGGGAATTGAGGGTGGGGCTATCTGAAGATCTTGAACTCGTG
CAACTGTAG
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