Gcaud8378.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8378.t1
Unique Name	Gcaud8378.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	434

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1026_length_14910_cov_4.896079	contig	NODE_1026_length_14910_cov_4.896079:8468..9769 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8378	Gcaud8378	Gracilaria caudata M_176_S67 male	gene	NODE_1026_length_14910_cov_4.896079 8468..9769 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8378.t1.start1	Gcaud8378.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1026_length_14910_cov_4.896079 8468..8470 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8378.t1.CDS1	Gcaud8378.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1026_length_14910_cov_4.896079 8468..9769 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8378.t1.exon1	Gcaud8378.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1026_length_14910_cov_4.896079 8468..9769 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8378.t1.stop1	Gcaud8378.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1026_length_14910_cov_4.896079 9767..9769 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8378.t1	Gcaud8378.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1026_length_14910_cov_4.896079 8468..9769 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1026_length_14910_cov_4.896079:8468..9769+
coding sequence from alignment at NODE_1026_length_14910_cov_4.896079:8468..9769+

mRNA sequence

>Gcaud8378.t1 ID=Gcaud8378.t1|Name=Gcaud8378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=434bp
MSFEVDLKMDTLFWDELGDHQIQINSCDRQGNSHDVLMEITGKNLDPDDY
TPGAAFVIDSEHWEKFCSPVPSLEGIDAGDPILFYRINNSTRSPSAMRLH
MTAIPGSLVTPSVRLSFINAPLRHHTQKRFVFDDNDGHLYSTTSRMLHDV
AHISPDDVFQPDFENPDTFSEVVILPGSNITASGFMEGSFNNFRITRLFQ
LEVGWEQTMKADISSRLIARSSYRATEEREVYRRPIQGAYYSDRFFLFGR
FTVNAFSVVDVVQEVQIESGVDAFVRATYENVQAVTASFSSRRMDANSLL
PPDLASYGTFDINFDSVIEQYVALNGFFGARPGIIIEARLGGTSMVGKFS
ATLGLEASVQYRNPPFEPLPYSSSSRGDCGQCHALQGRAYVKGKDLQYHV
HENGVLVKHKVLDSRLFETELTTVCALTQACSA*

spliced messenger RNA

>Gcaud8378.t1 ID=Gcaud8378.t1|Name=Gcaud8378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:8468..9769+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTTGAAGTAGATCTGAAGATGGATACGCTTTTTTGGGATGAACT
GGGCGACCATCAAATCCAGATCAACTCCTGTGACCGCCAGGGTAACAGTC
ATGACGTTCTTATGGAAATTACAGGAAAGAACCTAGACCCAGATGACTAC
ACTCCCggtgccgcttttgtgattgattctgaacattgggagaagttttg
cagccctgtgccatcccttgaaggtattgatgctggtgatcctattttgt
tttacaggatAAACAATTCTACCCGCTCCCCCAGCGCAATGCGACTGCAT
ATGACGGCTATACCTGGCTCTCTGGTCACTCCCTCGGTTCGCTTATCTTT
TATAAATGCTCCTCTCAGGCATCATACTCAGAAACGATTCGTATTCGACG
ACAATGACGGCCATCTCTACAGTACTACTTCTCGAATGCTACACGATGTT
GCCCATATATCACCAGATGACGTCTTCCAGCCTGATTTTGAGAACCCCGA
CACTTTTTCAGAGGTCGTCATTCTTCCTGGCTCCAATATCACGGCATCTG
GTTTTATGGAAGGTTCCTTCAACAATTTCAGGATCACTCGTCTGTTTCAA
TTGGAGGTTGGATGGGAACAGACAATGAAAGCTGATATTTCCTCCAGACT
GATTGCAAGGAGCTCGTATCGTGCAACAGAAGAAAGGGAGGTTTACCGGA
GACCAATCCAAGGTGCCTATTATTCAGATCGCTTCTTTCTTTTCGGAAGA
TTCACAGTGAACGCGTTCTCTGTCGTTGATGTTGTCCAGGAGGTTCAAAT
TGAGTCTGGAGTTGACGCATTCGTTCGAGCTACATATGAAAACGTTCAGG
CAGTCACAGCAAGTTTCTCTTCTCGACGAATGGATGCGAACAGCTTGCTC
CCACCAGACCTCGCAAGTTACGGAACTTTTGACATTAACTTTGACAGTGT
GATTGAACAGTATGTTGCGTTGAATGGCTTCTTTGGAGCTAGACCAGGTA
TCATCATTGAGGCACGGCTTGGCGGCACCTCCATGGTAGGAAAGTTTTCA
GCTACTCTGGGATTAGAAGCGTCAGTGCAGTACAGAAACCCTCCATTTGA
ACCACTTCCGTACTCTAGCTCCTCTCGAGGAGACTGTGGACAGTGTCATG
CTCTTCAAGGACGGGCATATGTGAAAGGGAAAGACCTGCAGTACCATGTA
CATGAGAACGGAGTGCTTGTGAAGCACAAAGTGCTGGACTCAAGATTGTT
TGAGACCGAGTTGACAACCGTTTGTGCGTTGACACAAGCATGTTCGGCAT
GA

protein sequence of Gcaud8378.t1

>Gcaud8378.t1 ID=Gcaud8378.t1|Name=Gcaud8378.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=434bp
MSFEVDLKMDTLFWDELGDHQIQINSCDRQGNSHDVLMEITGKNLDPDDY
TPGAAFVIDSEHWEKFCSPVPSLEGIDAGDPILFYRINNSTRSPSAMRLH
MTAIPGSLVTPSVRLSFINAPLRHHTQKRFVFDDNDGHLYSTTSRMLHDV
AHISPDDVFQPDFENPDTFSEVVILPGSNITASGFMEGSFNNFRITRLFQ
LEVGWEQTMKADISSRLIARSSYRATEEREVYRRPIQGAYYSDRFFLFGR
FTVNAFSVVDVVQEVQIESGVDAFVRATYENVQAVTASFSSRRMDANSLL
PPDLASYGTFDINFDSVIEQYVALNGFFGARPGIIIEARLGGTSMVGKFS
ATLGLEASVQYRNPPFEPLPYSSSSRGDCGQCHALQGRAYVKGKDLQYHV
HENGVLVKHKVLDSRLFETELTTVCALTQACSA*

mRNA from alignment at NODE_1026_length_14910_cov_4.896079:8468..9769+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8378.t1 ID=Gcaud8378.t1|Name=Gcaud8378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:8468..9769+ (Gracilaria caudata M_176_S67 male)
ATGAGCTTTGAAGTAGATCTGAAGATGGATACGCTTTTTTGGGATGAACT
GGGCGACCATCAAATCCAGATCAACTCCTGTGACCGCCAGGGTAACAGTC
ATGACGTTCTTATGGAAATTACAGGAAAGAACCTAGACCCAGATGACTAC
ACTCCCggtgccgcttttgtgattgattctgaacattgggagaagttttg
cagccctgtgccatcccttgaaggtattgatgctggtgatcctattttgt
tttacaggatAAACAATTCTACCCGCTCCCCCAGCGCAATGCGACTGCAT
ATGACGGCTATACCTGGCTCTCTGGTCACTCCCTCGGTTCGCTTATCTTT
TATAAATGCTCCTCTCAGGCATCATACTCAGAAACGATTCGTATTCGACG
ACAATGACGGCCATCTCTACAGTACTACTTCTCGAATGCTACACGATGTT
GCCCATATATCACCAGATGACGTCTTCCAGCCTGATTTTGAGAACCCCGA
CACTTTTTCAGAGGTCGTCATTCTTCCTGGCTCCAATATCACGGCATCTG
GTTTTATGGAAGGTTCCTTCAACAATTTCAGGATCACTCGTCTGTTTCAA
TTGGAGGTTGGATGGGAACAGACAATGAAAGCTGATATTTCCTCCAGACT
GATTGCAAGGAGCTCGTATCGTGCAACAGAAGAAAGGGAGGTTTACCGGA
GACCAATCCAAGGTGCCTATTATTCAGATCGCTTCTTTCTTTTCGGAAGA
TTCACAGTGAACGCGTTCTCTGTCGTTGATGTTGTCCAGGAGGTTCAAAT
TGAGTCTGGAGTTGACGCATTCGTTCGAGCTACATATGAAAACGTTCAGG
CAGTCACAGCAAGTTTCTCTTCTCGACGAATGGATGCGAACAGCTTGCTC
CCACCAGACCTCGCAAGTTACGGAACTTTTGACATTAACTTTGACAGTGT
GATTGAACAGTATGTTGCGTTGAATGGCTTCTTTGGAGCTAGACCAGGTA
TCATCATTGAGGCACGGCTTGGCGGCACCTCCATGGTAGGAAAGTTTTCA
GCTACTCTGGGATTAGAAGCGTCAGTGCAGTACAGAAACCCTCCATTTGA
ACCACTTCCGTACTCTAGCTCCTCTCGAGGAGACTGTGGACAGTGTCATG
CTCTTCAAGGACGGGCATATGTGAAAGGGAAAGACCTGCAGTACCATGTA
CATGAGAACGGAGTGCTTGTGAAGCACAAAGTGCTGGACTCAAGATTGTT
TGAGACCGAGTTGACAACCGTTTGTGCGTTGACACAAGCATGTTCGGCAT
GA

Coding sequence (CDS) from alignment at NODE_1026_length_14910_cov_4.896079:8468..9769+

>Gcaud8378.t1 ID=Gcaud8378.t1|Name=Gcaud8378.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1302bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:8468..9769+ (Gracilaria caudata M_176_S67 male)
ATGAGCTTTGAAGTAGATCTGAAGATGGATACGCTTTTTTGGGATGAACT
GGGCGACCATCAAATCCAGATCAACTCCTGTGACCGCCAGGGTAACAGTC
ATGACGTTCTTATGGAAATTACAGGAAAGAACCTAGACCCAGATGACTAC
ACTCCCggtgccgcttttgtgattgattctgaacattgggagaagttttg
cagccctgtgccatcccttgaaggtattgatgctggtgatcctattttgt
tttacaggatAAACAATTCTACCCGCTCCCCCAGCGCAATGCGACTGCAT
ATGACGGCTATACCTGGCTCTCTGGTCACTCCCTCGGTTCGCTTATCTTT
TATAAATGCTCCTCTCAGGCATCATACTCAGAAACGATTCGTATTCGACG
ACAATGACGGCCATCTCTACAGTACTACTTCTCGAATGCTACACGATGTT
GCCCATATATCACCAGATGACGTCTTCCAGCCTGATTTTGAGAACCCCGA
CACTTTTTCAGAGGTCGTCATTCTTCCTGGCTCCAATATCACGGCATCTG
GTTTTATGGAAGGTTCCTTCAACAATTTCAGGATCACTCGTCTGTTTCAA
TTGGAGGTTGGATGGGAACAGACAATGAAAGCTGATATTTCCTCCAGACT
GATTGCAAGGAGCTCGTATCGTGCAACAGAAGAAAGGGAGGTTTACCGGA
GACCAATCCAAGGTGCCTATTATTCAGATCGCTTCTTTCTTTTCGGAAGA
TTCACAGTGAACGCGTTCTCTGTCGTTGATGTTGTCCAGGAGGTTCAAAT
TGAGTCTGGAGTTGACGCATTCGTTCGAGCTACATATGAAAACGTTCAGG
CAGTCACAGCAAGTTTCTCTTCTCGACGAATGGATGCGAACAGCTTGCTC
CCACCAGACCTCGCAAGTTACGGAACTTTTGACATTAACTTTGACAGTGT
GATTGAACAGTATGTTGCGTTGAATGGCTTCTTTGGAGCTAGACCAGGTA
TCATCATTGAGGCACGGCTTGGCGGCACCTCCATGGTAGGAAAGTTTTCA
GCTACTCTGGGATTAGAAGCGTCAGTGCAGTACAGAAACCCTCCATTTGA
ACCACTTCCGTACTCTAGCTCCTCTCGAGGAGACTGTGGACAGTGTCATG
CTCTTCAAGGACGGGCATATGTGAAAGGGAAAGACCTGCAGTACCATGTA
CATGAGAACGGAGTGCTTGTGAAGCACAAAGTGCTGGACTCAAGATTGTT
TGAGACCGAGTTGACAACCGTTTGTGCGTTGACACAAGCATGTTCGGCAT
GA