Gcaud2037.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2037.t1
Unique NameGcaud2037.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length217
Homology
BLAST of Gcaud2037.t1 vs. uniprot
Match: A0A2V3IIK2_9FLOR (Ras-related protein RABH1d n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A2V3IIK2_9FLOR)

HSP 1 Score: 408 bits (1048), Expect = 1.270e-143
Identity = 207/216 (95.83%), Postives = 215/216 (99.54%), Query Frame = 0
Query:    1 MATSQSASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNATGEQSSTASSCVC 216
            MA++Q+ASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKT+SRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENS+LAGETDLIDVNLSPRPNATG+Q+S+ASSC C
Sbjct:    1 MASAQAASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTESRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSELAGETDLIDVNLSPRPNATGDQASSASSCAC 216          
BLAST of Gcaud2037.t1 vs. uniprot
Match: A0A7S0T3X7_9RHOD (Hypothetical protein n=2 Tax=Porphyridiaceae TaxID=2799 RepID=A0A7S0T3X7_9RHOD)

HSP 1 Score: 338 bits (867), Expect = 1.160e-115
Identity = 174/210 (82.86%), Postives = 188/210 (89.52%), Query Frame = 0
Query:   11 SVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNATGEQSSTA----SSCVC 216
            SV PLAKYKLV LGDQ  GKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV NR SFL+ +KWI++VRNERG DVI+VLVGNKTD+TD RQVS EEG+AKAKEHDIMFIETSAK GFN+K+LFRKIAAALPGMENS +A +TDLIDVNLS +PNATG  ++ A    SSC C
Sbjct:   32 SVPPLAKYKLVFLGDQSVGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVVNRTSFLNTSKWIDEVRNERGNDVILVLVGNKTDQTDRRQVSLEEGDAKAKEHDIMFIETSAKAGFNVKALFRKIAAALPGMENSAMARDTDLIDVNLSSQPNATGSAATGAGGADSSCAC 241          
BLAST of Gcaud2037.t1 vs. uniprot
Match: UPI001E1E0672 (ras-related protein RABH1d-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0672)

HSP 1 Score: 331 bits (848), Expect = 4.360e-113
Identity = 172/220 (78.18%), Postives = 186/220 (84.55%), Query Frame = 0
Query:    1 MATSQSASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNATGEQSS----TASSCVC 216
            M   Q     SV PLAKYKLV LGDQ  GKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV NR SFLS +KWI+DVRNERG DVI+VLVGNKTD+ + RQVS EEGEAKAKEH IMFIETSAK GFN+K+LFRKIAAALPGMENS +A +TD+IDV LSPRP+ +    +    +ASSC C
Sbjct:    1 MVAPQEQGGASVPPLAKYKLVFLGDQSVGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVINRTSFLSTSKWIDDVRNERGNDVILVLVGNKTDQAEKRQVSVEEGEAKAKEHGIMFIETSAKAGFNVKALFRKIAAALPGMENSHMAKDTDMIDVVLSPRPDGSAGPGNAAEGSASSCSC 220          
BLAST of Gcaud2037.t1 vs. uniprot
Match: A0A1X6PFR0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFR0_PORUM)

HSP 1 Score: 327 bits (837), Expect = 1.730e-111
Identity = 169/212 (79.72%), Postives = 186/212 (87.74%), Query Frame = 0
Query:    6 SASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNA-TGEQSSTASSCVC 216
            +AS+ SV PLAKYKLV +GDQ  GKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV+NR SFLS ++WIE+VR ERG DVI+VLVGNKTD+ D RQV  EEGEAKAKEH+IMFIETSAK GFN+K+LFRKIAAALPGMENS +A ETDLIDV L+P+P A     +  AS+C C
Sbjct:    4 AASSASVPPLAKYKLVFVGDQSVGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRASFLSTSRWIEEVRTERGGDVILVLVGNKTDQADRRQVGVEEGEAKAKEHEIMFIETSAKVGFNVKALFRKIAAALPGMENSAMARETDLIDVKLNPQPPAGAAGGAGGASTCAC 215          
BLAST of Gcaud2037.t1 vs. uniprot
Match: A0A5J4Z394_PORPP (Ras-related protein RABH1d n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z394_PORPP)

HSP 1 Score: 322 bits (824), Expect = 1.490e-109
Identity = 166/209 (79.43%), Postives = 182/209 (87.08%), Query Frame = 0
Query:    8 SAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNATGEQSSTASSCVC 216
            S+ +  PLAKYKLV LGDQ  GKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV NR SF++  KWIE+VRNERG DVI+VLVGNKTD+T+ RQVS EEG+AKAKEHDIMFIETSAK GFN+K+LFRKIAAALPGMENS +A +TDLIDV L+   + T   +S  SSC C
Sbjct:    5 SSSAPTPLAKYKLVFLGDQSVGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVVNRASFINTTKWIEEVRNERGNDVILVLVGNKTDQTEKRQVSVEEGDAKAKEHDIMFIETSAKAGFNVKALFRKIAAALPGMENSAMARDTDLIDVKLNASAS-TNPTASQESSCGC 212          
BLAST of Gcaud2037.t1 vs. uniprot
Match: I0YR71_COCSC (Ras-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YR71_COCSC)

HSP 1 Score: 311 bits (797), Expect = 1.920e-105
Identity = 162/211 (76.78%), Postives = 180/211 (85.31%), Query Frame = 0
Query:    7 ASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNA-TGEQSSTASSCVC 216
            A++ +V PLAKYKLV LGDQ  GKTSIITRFMYDKFDN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV+NR SFL+  +WIE+VR ERG+DVI+VLVGNKTD  D RQVS EEG+AKA+E ++MFIETSAK GFNIK+LFRKIAAALPGME+   A + DL+DVNLS   N+  G  SS  SSC C
Sbjct:    2 AASTTVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTARWIEEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEGDAKAREFNVMFIETSAKAGFNIKALFRKIAAALPGMESLSAAKQEDLVDVNLSATANSGRGAASSAPSSCAC 212          
BLAST of Gcaud2037.t1 vs. uniprot
Match: A0A4D9D1C8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1C8_9STRA)

HSP 1 Score: 311 bits (797), Expect = 2.810e-105
Identity = 157/210 (74.76%), Postives = 178/210 (84.76%), Query Frame = 0
Query:    7 ASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNATGEQSSTASSCVC 216
            AS   +  LAKYKLV LGDQG GKTSIITRFMYD F+ NYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD+TNR SFL+ +KW++DVRNERG DVII+LVGNKTD +D RQVSTEEGE KAK+ +IMFIETSAK GFNIK LFRK+A ALPGME++Q  G  +LID+ L+  P ++ +Q+ T S C C
Sbjct:   14 ASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSDQADTRSRCAC 223          
BLAST of Gcaud2037.t1 vs. uniprot
Match: W7U9T7_9STRA (Small gtp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9T7_9STRA)

HSP 1 Score: 312 bits (800), Expect = 2.310e-104
Identity = 158/210 (75.24%), Postives = 178/210 (84.76%), Query Frame = 0
Query:    7 ASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNATGEQSSTASSCVC 216
            AS   +  LAKYKLV LGDQG GKTSIITRFMYD F+ NYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD+TNR SFL+ +KW++DVRNERG DVII+LVGNKTD +D RQVSTEEGE KAK+ +IMFIETSAK GFNIK LFRK+A ALPGME++Q  G  +LID+ L+  P ++ EQ+ T S C C
Sbjct:  107 ASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPASSSEQADTRSRCAC 316          
BLAST of Gcaud2037.t1 vs. uniprot
Match: A0A2S3H431_9POAL (Uncharacterized protein n=3 Tax=PACMAD clade TaxID=147370 RepID=A0A2S3H431_9POAL)

HSP 1 Score: 307 bits (786), Expect = 8.180e-104
Identity = 156/205 (76.10%), Postives = 170/205 (82.93%), Query Frame = 0
Query:   12 VQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNATGEQSSTASSCVC 216
            V  LAKYKLV LGDQ  GKTSIITRFMYDKFDN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV NR SFL+ ++WI++VRNERG DVI+VLVGNKTD  D RQVSTEEGE+K+KE ++MFIETSAK GFNIK LFRKIAAALPGME    A + D++DVNL P    +  Q    S C C
Sbjct:    5 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRQSFLNTSRWIDEVRNERGGDVIVVLVGNKTDLVDKRQVSTEEGESKSKELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSAKQEDMVDVNLKPTSGQSNSQQQAGSGCAC 209          
BLAST of Gcaud2037.t1 vs. uniprot
Match: E1ZNZ1_CHLVA (GTP binding protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZNZ1_CHLVA)

HSP 1 Score: 306 bits (784), Expect = 1.770e-103
Identity = 159/210 (75.71%), Postives = 177/210 (84.29%), Query Frame = 0
Query:    8 SAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAKEHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPRPNA-TGEQSSTASSCVC 216
            +A  VQPLAKYKLV LGDQ  GKTSIITRFMYDKFD  YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVT+R SFL++ +W+E+VR ERG+DVIIVLVGNKTD  D RQVS EEG+AKA+E ++MFIETSAK GFNIK+LFRKIAAALPGME    A + DL+D+NL+P   A  G   S  S+C C
Sbjct:    2 AATQVQPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTSRQSFLNIQRWVEEVRAERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMEALNSAKQEDLVDINLAPSSAAKAGAGGSAGSTCAC 211          
The following BLAST results are available for this feature:
BLAST of Gcaud2037.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIK2_9FLOR1.270e-14395.83Ras-related protein RABH1d n=2 Tax=Rhodymeniophyci... [more]
A0A7S0T3X7_9RHOD1.160e-11582.86Hypothetical protein n=2 Tax=Porphyridiaceae TaxID... [more]
UPI001E1E06724.360e-11378.18ras-related protein RABH1d-like n=1 Tax=Mercenaria... [more]
A0A1X6PFR0_PORUM1.730e-11179.72Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4Z394_PORPP1.490e-10979.43Ras-related protein RABH1d n=1 Tax=Porphyridium pu... [more]
I0YR71_COCSC1.920e-10576.78Ras-domain-containing protein n=1 Tax=Coccomyxa su... [more]
A0A4D9D1C8_9STRA2.810e-10574.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U9T7_9STRA2.310e-10475.24Small gtp-binding protein n=1 Tax=Nannochloropsis ... [more]
A0A2S3H431_9POAL8.180e-10476.10Uncharacterized protein n=3 Tax=PACMAD clade TaxID... [more]
E1ZNZ1_CHLVA1.770e-10375.71GTP binding protein n=1 Tax=Chlorella variabilis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 156..178
score: 35.93
coord: 59..81
score: 48.05
coord: 18..39
score: 41.79
coord: 121..134
score: 47.92
coord: 41..57
score: 33.76
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 18..181
e-value: 1.9E-87
score: 306.5
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 23..215
e-value: 2.9E-8
score: 43.5
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 15..181
e-value: 2.0E-33
score: 127.1
NoneNo IPR availablePANTHERPTHR24073:SF1128RAS-RELATED PROTEIN RABH1B-LIKEcoord: 11..216
NoneNo IPR availablePANTHERPTHR24073DRAB5-RELATEDcoord: 11..216
NoneNo IPR availablePROSITEPS51420RHOcoord: 11..178
score: 10.829132
NoneNo IPR availablePROSITEPS51419RABcoord: 11..214
score: 32.014599
NoneNo IPR availableCDDcd01861Rab6coord: 18..178
e-value: 1.17896E-113
score: 319.568
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 20..180
e-value: 4.7E-13
score: 47.1
IPR001806Small GTPasePFAMPF00071Rascoord: 19..177
e-value: 9.8E-59
score: 197.6
IPR001806Small GTPasePROSITEPS51421RAScoord: 13..216
score: 18.073322
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 14..209
e-value: 1.4E-67
score: 228.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 17..181
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 17..174
e-value: 1.6E-29
score: 100.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1239_length_12250_cov_4.291307contigNODE_1239_length_12250_cov_4.291307:2831..3481 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2037.t1Gcaud2037.t1Gracilaria caudata M_176_S67 malemRNANODE_1239_length_12250_cov_4.291307 2831..3481 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2037.t1 ID=Gcaud2037.t1|Name=Gcaud2037.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=217bp
MATSQSASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATI
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVT
NRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAK
EHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPR
PNATGEQSSTASSCVC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom