Gcaud2037.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2037.t1
Unique Name	Gcaud2037.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1239_length_12250_cov_4.291307	contig	NODE_1239_length_12250_cov_4.291307:2831..3481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005645434.1
PFAMs	Ras
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K07893
Evalue	1.66e-106
EggNOG OGs	KOG0094@1\|root,KOG0094@2759\|Eukaryota,37QK7@33090\|Viridiplantae,34J20@3041\|Chlorophyta
Description	Rab subfamily of small GTPases
COG category	U
BRITE	ko00000,ko04031,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2037	Gcaud2037	Gracilaria caudata M_176_S67 male	gene	NODE_1239_length_12250_cov_4.291307 2831..3481 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2037.t1.start1	Gcaud2037.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1239_length_12250_cov_4.291307 2831..2833 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2037.t1.CDS1	Gcaud2037.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1239_length_12250_cov_4.291307 2831..3481 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2037.t1.exon1	Gcaud2037.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1239_length_12250_cov_4.291307 2831..3481 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2037.t1.stop1	Gcaud2037.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1239_length_12250_cov_4.291307 3479..3481 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2037.t1	Gcaud2037.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1239_length_12250_cov_4.291307 2831..3481 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1239_length_12250_cov_4.291307:2831..3481+
coding sequence from alignment at NODE_1239_length_12250_cov_4.291307:2831..3481+

mRNA sequence

>Gcaud2037.t1 ID=Gcaud2037.t1|Name=Gcaud2037.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=217bp
MATSQSASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATI
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVT
NRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAK
EHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPR
PNATGEQSSTASSCVC*

spliced messenger RNA

>Gcaud2037.t1 ID=Gcaud2037.t1|Name=Gcaud2037.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:2831..3481+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACCTCCCAATCTGCGTCTGCGGGCTCCGTGCAGCCTCTGGCCAA
ATACAAGCTCGTGGTCCTTGGAGATCAGGGTTGCGGAAAGACCAGCATCA
TCACCCGTTTCATGTACGACAAGTTCGACAACAACTATCAGGCCACGATC
GGCATTGACTTCCTTTCAAAGACTATGTACCTCGAAGATCGCACTGTGCG
CCTCCAACTGTGGGACACAGCCGGTCAAGAACGCTTCCGCTCCTTGATCC
CGTCCTACATTCGTGATTCCTCCGTCGCCGTCGTCGTTTACGACGTTACC
AACCGCCCGTCTTTTCTTTCCGTCAACAAATGGATCGAAGACGTTCGCAA
CGAGCGCGGCACCGATGTCATCATTGTTTTGGTTGGTAATAAAACCGACA
AGACAGACTCGCGCCAAGTGTCCACTGAAGAGGGAGAGGCGAAGGCGAAA
GAGCATGATATCATGTTCATTGAAACCAGTGCCAAGAATGGTTTCAACAT
CAAGTCTCTGTTCAGAAAGATCGCTGCGGCTCTTCCTGGCATGGAAAACT
CACAACTTGCCGGAGAAACTGATCTCATCGACGTTAACCTATCACCTCGA
CCCAACGCTACTGGTGAGCAATCCTCAACTGCTTCTTCATGCGTCTGTTA
G

protein sequence of Gcaud2037.t1

>Gcaud2037.t1 ID=Gcaud2037.t1|Name=Gcaud2037.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=217bp
MATSQSASAGSVQPLAKYKLVVLGDQGCGKTSIITRFMYDKFDNNYQATI
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVT
NRPSFLSVNKWIEDVRNERGTDVIIVLVGNKTDKTDSRQVSTEEGEAKAK
EHDIMFIETSAKNGFNIKSLFRKIAAALPGMENSQLAGETDLIDVNLSPR
PNATGEQSSTASSCVC*

mRNA from alignment at NODE_1239_length_12250_cov_4.291307:2831..3481+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2037.t1 ID=Gcaud2037.t1|Name=Gcaud2037.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:2831..3481+ (Gracilaria caudata M_176_S67 male)
ATGGCGACCTCCCAATCTGCGTCTGCGGGCTCCGTGCAGCCTCTGGCCAA
ATACAAGCTCGTGGTCCTTGGAGATCAGGGTTGCGGAAAGACCAGCATCA
TCACCCGTTTCATGTACGACAAGTTCGACAACAACTATCAGGCCACGATC
GGCATTGACTTCCTTTCAAAGACTATGTACCTCGAAGATCGCACTGTGCG
CCTCCAACTGTGGGACACAGCCGGTCAAGAACGCTTCCGCTCCTTGATCC
CGTCCTACATTCGTGATTCCTCCGTCGCCGTCGTCGTTTACGACGTTACC
AACCGCCCGTCTTTTCTTTCCGTCAACAAATGGATCGAAGACGTTCGCAA
CGAGCGCGGCACCGATGTCATCATTGTTTTGGTTGGTAATAAAACCGACA
AGACAGACTCGCGCCAAGTGTCCACTGAAGAGGGAGAGGCGAAGGCGAAA
GAGCATGATATCATGTTCATTGAAACCAGTGCCAAGAATGGTTTCAACAT
CAAGTCTCTGTTCAGAAAGATCGCTGCGGCTCTTCCTGGCATGGAAAACT
CACAACTTGCCGGAGAAACTGATCTCATCGACGTTAACCTATCACCTCGA
CCCAACGCTACTGGTGAGCAATCCTCAACTGCTTCTTCATGCGTCTGTTA
G

Coding sequence (CDS) from alignment at NODE_1239_length_12250_cov_4.291307:2831..3481+

>Gcaud2037.t1 ID=Gcaud2037.t1|Name=Gcaud2037.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=651bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:2831..3481+ (Gracilaria caudata M_176_S67 male)
ATGGCGACCTCCCAATCTGCGTCTGCGGGCTCCGTGCAGCCTCTGGCCAA
ATACAAGCTCGTGGTCCTTGGAGATCAGGGTTGCGGAAAGACCAGCATCA
TCACCCGTTTCATGTACGACAAGTTCGACAACAACTATCAGGCCACGATC
GGCATTGACTTCCTTTCAAAGACTATGTACCTCGAAGATCGCACTGTGCG
CCTCCAACTGTGGGACACAGCCGGTCAAGAACGCTTCCGCTCCTTGATCC
CGTCCTACATTCGTGATTCCTCCGTCGCCGTCGTCGTTTACGACGTTACC
AACCGCCCGTCTTTTCTTTCCGTCAACAAATGGATCGAAGACGTTCGCAA
CGAGCGCGGCACCGATGTCATCATTGTTTTGGTTGGTAATAAAACCGACA
AGACAGACTCGCGCCAAGTGTCCACTGAAGAGGGAGAGGCGAAGGCGAAA
GAGCATGATATCATGTTCATTGAAACCAGTGCCAAGAATGGTTTCAACAT
CAAGTCTCTGTTCAGAAAGATCGCTGCGGCTCTTCCTGGCATGGAAAACT
CACAACTTGCCGGAGAAACTGATCTCATCGACGTTAACCTATCACCTCGA
CCCAACGCTACTGGTGAGCAATCCTCAACTGCTTCTTCATGCGTCTGTTA
G