Gcaud2036.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2036.t1
Unique Name	Gcaud2036.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	545

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1239_length_12250_cov_4.291307	contig	NODE_1239_length_12250_cov_4.291307:17..1651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2036	Gcaud2036	Gracilaria caudata M_176_S67 male	gene	NODE_1239_length_12250_cov_4.291307 17..1651 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2036.t1.start1	Gcaud2036.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1239_length_12250_cov_4.291307 17..19 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2036.t1.CDS1	Gcaud2036.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1239_length_12250_cov_4.291307 17..1651 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2036.t1.exon1	Gcaud2036.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1239_length_12250_cov_4.291307 17..1651 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2036.t1.stop1	Gcaud2036.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1239_length_12250_cov_4.291307 1649..1651 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2036.t1	Gcaud2036.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1239_length_12250_cov_4.291307 17..1651 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1239_length_12250_cov_4.291307:17..1651+
coding sequence from alignment at NODE_1239_length_12250_cov_4.291307:17..1651+

mRNA sequence

>Gcaud2036.t1 ID=Gcaud2036.t1|Name=Gcaud2036.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=545bp
MSPLPFDLEDMTTTDLLNNINPELLDYVKCNTPHVYSGLLAQERTNTTAT
TDSIMPVHTQPPPTIDSPAPNLAAALASQIRPPSPGHSLGLANPMSAVAA
VPPVASLPVTPLTSNVTNSPSASLLSHHSAMHPAAPIAAPVPVSMPAQIP
NSALSVSNPALLAVLRQAQAMASVSHLHPQSAVSRRNFSPACALSIAPNS
PLQTPNNATVAAVAGAAAAAAAAAAANCTLPQSVHHRFATASLQNKRLSE
RPHAATPSHGVSARTRVPPAQAARVLKSTHAPPRVRAMTSTPMQLQPPQP
PPPTIVGQKRPNSAIKQAAAATSTILHSSSSGKRPSSLSSTTSQSLANTS
APASRNRLHPAVGALTGVGANLSSRANSAASSGAVRVPPKMEHIEEVMPQ
STAASVQASDAEEDADLEVKKAMRAERNRQSAAASRERKKQYIKELERRV
DMLSQENAKMQVSQFRLVRERLELESKILDEVKQLKRKVVVRDMEIHKLS
RELQNAKLKVGDEEEGEGSEVPRPSTWDAAEWRKKKGRGSRRRV*

spliced messenger RNA

>Gcaud2036.t1 ID=Gcaud2036.t1|Name=Gcaud2036.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:17..1651+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCGCTCCCCTTCGACCTCGAGGATATGACCACAACCGACCTGCT
CAACAACATCAATCCCGAGCTTCTGGACTATGTCAAATGCAACACCCCCC
ACGTATACTCCGGTCTCCTCGCTCAGGAGCGCACCAACACCACTGCCACC
ACCGACTCCATTATGCCCGTCCACACCCAGCCGCCTCCCACCATTGACTC
TCCAGCTCCCAATCTCGCAGCCGCTCTCGCATCGCAGATTCGTCCCCCCT
CCCCAGGCCACTCTCTGGGCTTAGCCAACCCCATGTCAGCTGTAGCTGCA
GTACCACCCGTCGCCTCACTTCCTGTCACTCCGCTCACATCAAACGTTAC
TAACTCTCCATCCGCCTCGCTTCTCAGCCATCACTCCGCCATGCACCCTG
CCGCACCCATCGCTGCGCCCGTACCGGTGTCAATGCCAGCACAAATACCC
AACTCCGCTCTTTCCGTCTCAAACCCCGCTTTGCTTGCTGTTTTGCGACA
GGCGCAGGCCATGGCCTCCGTCTCCCATCTGCACCCACAATCCGCGGTCT
CGCGTCGCAATTTTTCCCCCGCATGCGCCCTCTCCATTGCGCCTAACTCG
CCGTTACAGAcacccaacaatgccaccgtcgctgctgttgccggtgccgc
agctgctgccgccgctgcagccgctgcAAACTGCACTCTCCCGCAATCAG
TACATCACCGATTTGCAACTGCTTCCTTACAGAACAAACGCCTCTCGGAA
CGCCCTCACGCTGCCACTCCTTCTCACGGCGTGTCAGCTCGCACCAGAGT
GCCTCCCGCTCAAGCTGCACGTGTGTTGAAGTCAACACACGCACCACCCA
GAGTGCGTGCGATGACGTCCACGCCCATGCAACTTCAGCCACCTCAACCT
CCGCCTCCCACCATTGTTGGGCAAAAGAGGCCCAATTCTGCAATCAAGCA
GGCTGCCGCAGCCACCTCAACCATACTCCATAGCTCTTCGTCGGGCAAGC
GACCGTCATCTTTGTCTTCGACAACGTCGCAGTCTTTGGCGAATACATCG
GCGCCAGCAAGCCGCAACAGATTGCACCCTGCTGTTGGTGCGCTTACTGG
CGTGGGTGCTAATTTAAGCAGCCGTGCGAATTCGGCTGCGTCCAGCGGCG
CCGTACGTGTGCCGCCCAAGATGGAACATATCGAGGAGGTGATGCCACAA
TCAACGGCAGCGTCCGTTCAAGCGTCTGACGCGGAAGAAGACGCAGATCT
GGAGGTTAAGAAAGCAATGCGAGCGGAGCGGAACCGGCAGAGTGCAGCAG
CGAGCCGTGAGCGTAAGAAGCAGTATATCAAAGAGCTCGAACGACGGGTG
GATATGCTCTCGCAAGAAAACGCAAAAATGCAGGTGAGCCAGTTCCGCTT
AGTACGTGAAAGACTTGAGCTTGAGTCAAAAATATTGGATGAGGTCAAAC
AGCTCAAGAGAAAAGTAGTGGTCCGAGATATGGAGATTCACAAATTGTCA
CGTGAGCTACAGAATGCCAAGTTGAAAGTCGGAGATGAAGAGGAGGGCGA
AGGTTCGGAAGTGCCTCGCCCCAGCACTTGGGACGCAGCAGAGTGGCGAA
AGAAAAAGGGCAGGGGTTCGCGACGACGAGTGTAG

protein sequence of Gcaud2036.t1

>Gcaud2036.t1 ID=Gcaud2036.t1|Name=Gcaud2036.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=545bp
MSPLPFDLEDMTTTDLLNNINPELLDYVKCNTPHVYSGLLAQERTNTTAT
TDSIMPVHTQPPPTIDSPAPNLAAALASQIRPPSPGHSLGLANPMSAVAA
VPPVASLPVTPLTSNVTNSPSASLLSHHSAMHPAAPIAAPVPVSMPAQIP
NSALSVSNPALLAVLRQAQAMASVSHLHPQSAVSRRNFSPACALSIAPNS
PLQTPNNATVAAVAGAAAAAAAAAAANCTLPQSVHHRFATASLQNKRLSE
RPHAATPSHGVSARTRVPPAQAARVLKSTHAPPRVRAMTSTPMQLQPPQP
PPPTIVGQKRPNSAIKQAAAATSTILHSSSSGKRPSSLSSTTSQSLANTS
APASRNRLHPAVGALTGVGANLSSRANSAASSGAVRVPPKMEHIEEVMPQ
STAASVQASDAEEDADLEVKKAMRAERNRQSAAASRERKKQYIKELERRV
DMLSQENAKMQVSQFRLVRERLELESKILDEVKQLKRKVVVRDMEIHKLS
RELQNAKLKVGDEEEGEGSEVPRPSTWDAAEWRKKKGRGSRRRV*

mRNA from alignment at NODE_1239_length_12250_cov_4.291307:17..1651+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2036.t1 ID=Gcaud2036.t1|Name=Gcaud2036.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:17..1651+ (Gracilaria caudata M_176_S67 male)
ATGTCCCCGCTCCCCTTCGACCTCGAGGATATGACCACAACCGACCTGCT
CAACAACATCAATCCCGAGCTTCTGGACTATGTCAAATGCAACACCCCCC
ACGTATACTCCGGTCTCCTCGCTCAGGAGCGCACCAACACCACTGCCACC
ACCGACTCCATTATGCCCGTCCACACCCAGCCGCCTCCCACCATTGACTC
TCCAGCTCCCAATCTCGCAGCCGCTCTCGCATCGCAGATTCGTCCCCCCT
CCCCAGGCCACTCTCTGGGCTTAGCCAACCCCATGTCAGCTGTAGCTGCA
GTACCACCCGTCGCCTCACTTCCTGTCACTCCGCTCACATCAAACGTTAC
TAACTCTCCATCCGCCTCGCTTCTCAGCCATCACTCCGCCATGCACCCTG
CCGCACCCATCGCTGCGCCCGTACCGGTGTCAATGCCAGCACAAATACCC
AACTCCGCTCTTTCCGTCTCAAACCCCGCTTTGCTTGCTGTTTTGCGACA
GGCGCAGGCCATGGCCTCCGTCTCCCATCTGCACCCACAATCCGCGGTCT
CGCGTCGCAATTTTTCCCCCGCATGCGCCCTCTCCATTGCGCCTAACTCG
CCGTTACAGAcacccaacaatgccaccgtcgctgctgttgccggtgccgc
agctgctgccgccgctgcagccgctgcAAACTGCACTCTCCCGCAATCAG
TACATCACCGATTTGCAACTGCTTCCTTACAGAACAAACGCCTCTCGGAA
CGCCCTCACGCTGCCACTCCTTCTCACGGCGTGTCAGCTCGCACCAGAGT
GCCTCCCGCTCAAGCTGCACGTGTGTTGAAGTCAACACACGCACCACCCA
GAGTGCGTGCGATGACGTCCACGCCCATGCAACTTCAGCCACCTCAACCT
CCGCCTCCCACCATTGTTGGGCAAAAGAGGCCCAATTCTGCAATCAAGCA
GGCTGCCGCAGCCACCTCAACCATACTCCATAGCTCTTCGTCGGGCAAGC
GACCGTCATCTTTGTCTTCGACAACGTCGCAGTCTTTGGCGAATACATCG
GCGCCAGCAAGCCGCAACAGATTGCACCCTGCTGTTGGTGCGCTTACTGG
CGTGGGTGCTAATTTAAGCAGCCGTGCGAATTCGGCTGCGTCCAGCGGCG
CCGTACGTGTGCCGCCCAAGATGGAACATATCGAGGAGGTGATGCCACAA
TCAACGGCAGCGTCCGTTCAAGCGTCTGACGCGGAAGAAGACGCAGATCT
GGAGGTTAAGAAAGCAATGCGAGCGGAGCGGAACCGGCAGAGTGCAGCAG
CGAGCCGTGAGCGTAAGAAGCAGTATATCAAAGAGCTCGAACGACGGGTG
GATATGCTCTCGCAAGAAAACGCAAAAATGCAGGTGAGCCAGTTCCGCTT
AGTACGTGAAAGACTTGAGCTTGAGTCAAAAATATTGGATGAGGTCAAAC
AGCTCAAGAGAAAAGTAGTGGTCCGAGATATGGAGATTCACAAATTGTCA
CGTGAGCTACAGAATGCCAAGTTGAAAGTCGGAGATGAAGAGGAGGGCGA
AGGTTCGGAAGTGCCTCGCCCCAGCACTTGGGACGCAGCAGAGTGGCGAA
AGAAAAAGGGCAGGGGTTCGCGACGACGAGTGTAG

Coding sequence (CDS) from alignment at NODE_1239_length_12250_cov_4.291307:17..1651+

>Gcaud2036.t1 ID=Gcaud2036.t1|Name=Gcaud2036.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1635bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:17..1651+ (Gracilaria caudata M_176_S67 male)
ATGTCCCCGCTCCCCTTCGACCTCGAGGATATGACCACAACCGACCTGCT
CAACAACATCAATCCCGAGCTTCTGGACTATGTCAAATGCAACACCCCCC
ACGTATACTCCGGTCTCCTCGCTCAGGAGCGCACCAACACCACTGCCACC
ACCGACTCCATTATGCCCGTCCACACCCAGCCGCCTCCCACCATTGACTC
TCCAGCTCCCAATCTCGCAGCCGCTCTCGCATCGCAGATTCGTCCCCCCT
CCCCAGGCCACTCTCTGGGCTTAGCCAACCCCATGTCAGCTGTAGCTGCA
GTACCACCCGTCGCCTCACTTCCTGTCACTCCGCTCACATCAAACGTTAC
TAACTCTCCATCCGCCTCGCTTCTCAGCCATCACTCCGCCATGCACCCTG
CCGCACCCATCGCTGCGCCCGTACCGGTGTCAATGCCAGCACAAATACCC
AACTCCGCTCTTTCCGTCTCAAACCCCGCTTTGCTTGCTGTTTTGCGACA
GGCGCAGGCCATGGCCTCCGTCTCCCATCTGCACCCACAATCCGCGGTCT
CGCGTCGCAATTTTTCCCCCGCATGCGCCCTCTCCATTGCGCCTAACTCG
CCGTTACAGAcacccaacaatgccaccgtcgctgctgttgccggtgccgc
agctgctgccgccgctgcagccgctgcAAACTGCACTCTCCCGCAATCAG
TACATCACCGATTTGCAACTGCTTCCTTACAGAACAAACGCCTCTCGGAA
CGCCCTCACGCTGCCACTCCTTCTCACGGCGTGTCAGCTCGCACCAGAGT
GCCTCCCGCTCAAGCTGCACGTGTGTTGAAGTCAACACACGCACCACCCA
GAGTGCGTGCGATGACGTCCACGCCCATGCAACTTCAGCCACCTCAACCT
CCGCCTCCCACCATTGTTGGGCAAAAGAGGCCCAATTCTGCAATCAAGCA
GGCTGCCGCAGCCACCTCAACCATACTCCATAGCTCTTCGTCGGGCAAGC
GACCGTCATCTTTGTCTTCGACAACGTCGCAGTCTTTGGCGAATACATCG
GCGCCAGCAAGCCGCAACAGATTGCACCCTGCTGTTGGTGCGCTTACTGG
CGTGGGTGCTAATTTAAGCAGCCGTGCGAATTCGGCTGCGTCCAGCGGCG
CCGTACGTGTGCCGCCCAAGATGGAACATATCGAGGAGGTGATGCCACAA
TCAACGGCAGCGTCCGTTCAAGCGTCTGACGCGGAAGAAGACGCAGATCT
GGAGGTTAAGAAAGCAATGCGAGCGGAGCGGAACCGGCAGAGTGCAGCAG
CGAGCCGTGAGCGTAAGAAGCAGTATATCAAAGAGCTCGAACGACGGGTG
GATATGCTCTCGCAAGAAAACGCAAAAATGCAGGTGAGCCAGTTCCGCTT
AGTACGTGAAAGACTTGAGCTTGAGTCAAAAATATTGGATGAGGTCAAAC
AGCTCAAGAGAAAAGTAGTGGTCCGAGATATGGAGATTCACAAATTGTCA
CGTGAGCTACAGAATGCCAAGTTGAAAGTCGGAGATGAAGAGGAGGGCGA
AGGTTCGGAAGTGCCTCGCCCCAGCACTTGGGACGCAGCAGAGTGGCGAA
AGAAAAAGGGCAGGGGTTCGCGACGACGAGTGTAG