Gcaud2039.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2039.t2
Unique NameGcaud2039.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length774
Homology
BLAST of Gcaud2039.t2 vs. uniprot
Match: A0A2V3IIL4_9FLOR (DRBM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIL4_9FLOR)

HSP 1 Score: 535 bits (1379), Expect = 2.300e-173
Identity = 327/746 (43.83%), Postives = 454/746 (60.86%), Query Frame = 0
Query:   47 QAFASSSVRQGGHLNFDPASMTQSGITVPNSADHRVPTP-HFGLGGSHFVQHPDNRVHGLSPETIIQL--GRIPPPSYVPMPPMTAMMGYRGQLPMQPNFLP-VPQMPMNPFLQSPGGNLYHSQAAHFNPAL--------------SRVQASGNPFPVN-PSVANSPDHGGTSYPVRPIPLSNLEVRASNGGTTSRQPKEGSHKGKPKPRISSDSDPDVVTNGLNDDIGSARNKKQPAKKQQTKKTPDPSVIEVDEIPCDDEEDGVDYVSRLNQIPQKKKFFALLNPRFEQVHVR-GGGAGWRCKMIARLLNKSPQEVIETITIGRNKSRAKKAAAKEMLSSLESRVPELFSSETNVKQNVQAIRSQSALNAINQLVREGHLLSQPNCETEEVSDRDEDRWRCCATLVTKDHGRKVFSEYGSSKNVAKQKWARKALELLIELKSPGAEQFRCIIEPGQAPIKKTLASVPKASEVIVRASDDEISNASCDDIVDDMDLSLELPSDYELVVAKTELDCEKWFEAHAQPGTELGAFIDSKLARLSVDESITSEDGDESGKLKRPILCFSTATSCIVIRIDKRQACENESNLD-LALDTFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTLVEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKRINTAGVANDLEVLSRRIVEVG 771
            +A ASS+ + GG     P      G   P S   R+PTP H G        +P ++ + L   T   L  G +P  ++ P P   A+ GY G      NF P +P MP  PF+ + G ++   QA +F P                 RV       PV+ PS   + +       V   P+  LEV ++   T     +E   +      + S+    +          SA+  K    K  T +      IEVDEIP ++++D  D+VSRLN+IPQK+KF AL  P+++ V VR GGG+GW C M A +L KSPQEV+E +++ RNK+RAK+AAAKEML  L+S++PE F SE   KQ  Q +R  SA+NA++QL +EG+L  QP  + EEV++  E+ WRC  TL T+DH  KVF EYG SKN AKQK ARKALE +I+LKSPGA+QF+ ++ P +    KT+A++P ASEVI +  DDE+S+ SCDD+V+   L LELP+DYELV+A+TE DC  WF AHAQPG  LG +IDS+ AR SV   ++  +G++  ++K P+LCFS+A + IV+R+DKR++  +   L  +  +TFW+P+ VA  LED RV+K AL CD+GLD L E HGIQ + VQD+A++S+AIAG GR    +  SSLR LTKYWMR+E K I+W+ +WP +  L +  LG D +E+A AVLSA+A  CVR K+ DAAR+KR+N  G +NDL VL +R+++ G
Sbjct:  326 EAIASSNNQHGGIFGLQPDGTILHGFQRPLSTP-RIPTPRHPGA----LYSNPISKSNPLCDVTSPALFHGGMPTTAFGPFPFQHAI-GYPGVPNGLHNFAPPLPIMPGRPFIGNFGSDMM--QAVNFQPPCVGNPGQVPPGAFPNERVDTLRGTIPVDVPSQPLNTEVIAPRSNVLHSPVQALEVESNLRVTDKSLDREDVREDARNAEVRSNDCAQMTG-------ASAQRSKNTPVKGTTVRRGLRKAIEVDEIPYEEDDDAEDHVSRLNEIPQKRKFIALARPQWQMVRVRSGGGSGWMCTMKATVLRKSPQEVVECVSVARNKNRAKRAAAKEMLLKLKSKLPEAFLSENQGKQTNQPVRMHSAVNALHQLAQEGNLPCQPGYDVEEVNEAGENHWRCTTTLFTRDHDSKVFVEYGPSKNAAKQKGARKALEAIIKLKSPGADQFQKLLLPAEIQPTKTMANIPGASEVIFQTGDDEMSHGSCDDLVEGTGLRLELPTDYELVIAETESDCLNWFSAHAQPGARLGIYIDSETARDSVFR-VSELEGNKEYEIKFPMLCFSSANAGIVVRVDKRESSPDAGGLSQVEENTFWVPDIVADTLEDARVEKAALACDEGLDELFERHGIQADGVQDVALTSIAIAGLGRFDGRRQFSSLRQLTKYWMRQEVKDINWQTLWPKRSELPKALLGTDAKELAAAVLSAFAVRCVRVKLSDAARMKRVNMGGASNDLVVLCKRVLDSG 1055          
BLAST of Gcaud2039.t2 vs. uniprot
Match: A0A2V3IU14_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU14_9FLOR)

HSP 1 Score: 198 bits (503), Expect = 1.320e-55
Identity = 99/159 (62.26%), Postives = 120/159 (75.47%), Query Frame = 0
Query:  609 ENESNLDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTLVEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKRINTAGVANDLEVLSRRI 767
            EN+SN D    TFW+P+   +VLED RVQK A+  D  LD+L E HGIQCES+ + +VSSLAIAGYGRV DSQ+LS+L +LT+ WMR+EA+ ISWE IWP KH LVE+ LG D +EVA+ VLSAYATFCVREK+ DAAR+KR N  G  N L V S R+
Sbjct:   19 ENDSNFDHVHHTFWVPKVATKVLEDSRVQKAAIAGDYWLDLLFEHHGIQCESIHEFSVSSLAIAGYGRVDDSQNLSTLTELTEEWMRQEARAISWEEIWPKKHLLVEKWLGGDDKEVALGVLSAYATFCVREKLCDAARMKRRNNPGAVNGLHVFSTRM 177          
BLAST of Gcaud2039.t2 vs. uniprot
Match: R7QJ53_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ53_CHOCR)

HSP 1 Score: 197 bits (502), Expect = 1.280e-49
Identity = 157/510 (30.78%), Postives = 250/510 (49.02%), Query Frame = 0
Query:  283 EIPCDDEEDGVDYVSRLNQIPQKKKFFALLNPRF--EQVHVRGGGAGWRCKMIARLLNKSPQEVIETITIGRNKSRAKKAAAKEMLSSLE-----SRVPELFSSETNVKQNVQAIRSQS-ALNAINQLVREGHLLSQPNCETEEVSDRDEDRWRCCATLVTKDHGRKVFSEYGSSKNVAKQKWARKALELLIELKSPGAEQFRCII------EPGQAPIKKTLASVPKASEVIVRASDDEISNASCDDIV----DDMDLSLELPSDYELVVAKTELDCEKWFEAHAQPGTELGAFIDSKLARLSVDESIT---SEDG--DESGKLKRPILCFSTATSCIVIRIDKRQACENESNLDLALDT-FWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTLVEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKRINTAGVANDLEVLSRRIV 768
            E+  D+ EDG D+VS L+ + Q+ + +   NP F  ++   RG    W C    ++L K  +E ++     +++ RAK+  +K+++++L+     SR  E      +  + +  +   S A+ A+ QL     L +QP+   EE+       WRC   +     G+   SE G  K +AK   + KALE L ELK    E+F  +       E  +A   K    +  A E IV+ SD                +D +    LP  Y +V A     CE+W   HA+PG+E+G F+DS  AR   D   T   S DG   + G ++  +LCFST TSC+V+R DK   C +E + D   +   W+PEAV  +L D ++QK     DDGL  L E HGIQ   + D+++ S A   +   S+++ L  + +L KYW++KE   +  + +W       E  + E  +   +AV+SA+A  C++E++ D A  KR    G A +   LS+R++
Sbjct:  313 EVSSDEGEDGEDHVSTLHVLSQRLRKWT--NPVFAWDRKDARGH---WVCTGTVKVLFKEGEEFLKKTVNAKSRKRAKQKVSKQLIAALKEMIAASRKAESSGDAGSPSEEIDKMTGISTAVGALTQLFHRHKLDTQPDTRFEEIGG---GLWRCTVIMAISGVGKVKVSEEGPQKKLAKSVASLKALERLRELKVIRPEEFSHLKLCQTGKEGREAVSAKEANKMRSAREDIVQISDXXXXXXXXXXXXXXXEEDGEGRFLLPKHYLIVEATKPEHCEEWRTTHAKPGSEIGVFVDSCSARREFDGLKTNRVSADGVTKDIGSIR--VLCFSTKTSCLVVRKDK---CTDEKSKDKDCEEGLWLPEAVCTLLCDRKIQKHGHNVDDGLVWLREYHGIQAWGMNDVSILSSASRSWSHCSNTRVLHGIHELMKYWLKKELVSVCLKDVWRKGSASDEAVVPEGDDTTGMAVVSAFACMCIQEQIRDEAVHKRTRLYGAAAEFRELSKRLM 809          
BLAST of Gcaud2039.t2 vs. uniprot
Match: A0A2V3J3V8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3V8_9FLOR)

HSP 1 Score: 147 bits (371), Expect = 6.500e-38
Identity = 69/106 (65.09%), Postives = 83/106 (78.30%), Query Frame = 0
Query:  609 ENESNLDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTLV 714
            EN+SNLD   D FW+PE  A+VLED RVQK A+   D  D+L E HGIQCES+ D++VSSLA+AGYGRV DSQ+LS+  +LT+YWMRKEA+ ISWE IWP KH LV
Sbjct:   19 ENDSNLDHVQDKFWVPEVAAKVLEDSRVQKAAIAGVDWFDLLFEHHGIQCESIHDVSVSSLAVAGYGRVGDSQNLSNSTELTEYWMRKEARAISWEEIWPKKHLLV 124          
BLAST of Gcaud2039.t2 vs. uniprot
Match: A0A2V3IEY0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEY0_9FLOR)

HSP 1 Score: 131 bits (329), Expect = 1.140e-31
Identity = 69/144 (47.92%), Postives = 82/144 (56.94%), Query Frame = 0
Query:    1 MMGQKAVPGNTDVYGRNRAHETGHSAQDIRIPFGIPPPVVGGPPFPQAFASSSVRQGGHLNFDPASMTQSGITVPNSADHRVPTPHFGLGGSHFVQHPDNRVHGLSPETIIQLGRIPPPSYVPMPPMTAMMGYRGQLPMQPNFL 144
            M+ Q   P  T V+      +   S Q  R+PFG  PPVVG P FP AFA  ++ QG  L FDPA+M   G       DHRV  P FG    H  Q PD RVHGLSPE I+QL R P P ++ +P M  MMGY+  LP+QPNFL
Sbjct:   13 MLVQTKTPATTHVHKPKTVPDPVVSIQQFRVPFGTSPPVVGRPSFPPAFAVPTIPQGRQLRFDPANMNSLGANATTRNDHRVSNPRFGHERPHLAQVPDGRVHGLSPEAILQLNRFPHPPFLALPHMAPMMGYQSPLPLQPNFL 156          
BLAST of Gcaud2039.t2 vs. uniprot
Match: A0A2V3IMW2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMW2_9FLOR)

HSP 1 Score: 56.6 bits (135), Expect = 2.200e-6
Identity = 30/79 (37.97%), Postives = 37/79 (46.84%), Query Frame = 0
Query:    1 MMGQKAVPGNTDVYGRNRAHETGHSAQDIRIPFGIPPPVVGGPPFPQAFASSSVRQGGHLNFDPASMTQSGITVPNSAD 79
            M+ Q   P  T V+      +   S Q + +PFG  PPVVG P FP AFA   + QG    FDPA+M   G       D
Sbjct:   13 MLAQTTAPATTQVHKPEPVPDPAVSMQQVTVPFGSSPPVVGRPSFPPAFAVPIIPQGRQPRFDPANMNSLGANATTGND 91          
The following BLAST results are available for this feature:
BLAST of Gcaud2039.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IIL4_9FLOR2.300e-17343.83DRBM domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IU14_9FLOR1.320e-5562.26Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QJ53_CHOCR1.280e-4930.78Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3J3V8_9FLOR6.500e-3865.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IEY0_9FLOR1.140e-3147.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMW2_9FLOR2.200e-637.97Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 352..372
NoneNo IPR availableGENE3D3.30.160.20coord: 275..382
e-value: 1.5E-6
score: 30.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableCDDcd00048DSRM_SFcoord: 400..462
e-value: 5.34871E-4
score: 36.8792
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 292..369
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 295..370
e-value: 0.054
score: 17.3
coord: 392..466
e-value: 0.074
score: 16.0
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 572..743
e-value: 2.7E-6
score: 28.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1239_length_12250_cov_4.291307contigNODE_1239_length_12250_cov_4.291307:3696..6017 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2039.t2Gcaud2039.t2Gracilaria caudata M_176_S67 malemRNANODE_1239_length_12250_cov_4.291307 3696..6017 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2039.t2 ID=Gcaud2039.t2|Name=Gcaud2039.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=774bp
MMGQKAVPGNTDVYGRNRAHETGHSAQDIRIPFGIPPPVVGGPPFPQAFA
SSSVRQGGHLNFDPASMTQSGITVPNSADHRVPTPHFGLGGSHFVQHPDN
RVHGLSPETIIQLGRIPPPSYVPMPPMTAMMGYRGQLPMQPNFLPVPQMP
MNPFLQSPGGNLYHSQAAHFNPALSRVQASGNPFPVNPSVANSPDHGGTS
YPVRPIPLSNLEVRASNGGTTSRQPKEGSHKGKPKPRISSDSDPDVVTNG
LNDDIGSARNKKQPAKKQQTKKTPDPSVIEVDEIPCDDEEDGVDYVSRLN
QIPQKKKFFALLNPRFEQVHVRGGGAGWRCKMIARLLNKSPQEVIETITI
GRNKSRAKKAAAKEMLSSLESRVPELFSSETNVKQNVQAIRSQSALNAIN
QLVREGHLLSQPNCETEEVSDRDEDRWRCCATLVTKDHGRKVFSEYGSSK
NVAKQKWARKALELLIELKSPGAEQFRCIIEPGQAPIKKTLASVPKASEV
IVRASDDEISNASCDDIVDDMDLSLELPSDYELVVAKTELDCEKWFEAHA
QPGTELGAFIDSKLARLSVDESITSEDGDESGKLKRPILCFSTATSCIVI
RIDKRQACENESNLDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVL
SEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKV
ISWEGIWPMKHTLVEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKR
INTAGVANDLEVLSRRIVEVGAG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
IPR036397RNaseH_sf