Gcaud2039.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2039.t2
Unique Name	Gcaud2039.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	774

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1239_length_12250_cov_4.291307	contig	NODE_1239_length_12250_cov_4.291307:3696..6017 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2039	Gcaud2039	Gracilaria caudata M_176_S67 male	gene	NODE_1239_length_12250_cov_4.291307 3696..6017 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2039.t2.stop1	Gcaud2039.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1239_length_12250_cov_4.291307 3696..3698 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2039.t2.CDS1	Gcaud2039.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1239_length_12250_cov_4.291307 3696..6017 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2039.t2.exon1	Gcaud2039.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1239_length_12250_cov_4.291307 3696..6017 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2039.t2.start1	Gcaud2039.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1239_length_12250_cov_4.291307 6015..6017 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2039.t2	Gcaud2039.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1239_length_12250_cov_4.291307 3696..6017 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1239_length_12250_cov_4.291307:3696..6017-
coding sequence from alignment at NODE_1239_length_12250_cov_4.291307:3696..6017-

mRNA sequence

>Gcaud2039.t2 ID=Gcaud2039.t2|Name=Gcaud2039.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp
MMGQKAVPGNTDVYGRNRAHETGHSAQDIRIPFGIPPPVVGGPPFPQAFA
SSSVRQGGHLNFDPASMTQSGITVPNSADHRVPTPHFGLGGSHFVQHPDN
RVHGLSPETIIQLGRIPPPSYVPMPPMTAMMGYRGQLPMQPNFLPVPQMP
MNPFLQSPGGNLYHSQAAHFNPALSRVQASGNPFPVNPSVANSPDHGGTS
YPVRPIPLSNLEVRASNGGTTSRQPKEGSHKGKPKPRISSDSDPDVVTNG
LNDDIGSARNKKQPAKKQQTKKTPDPSVIEVDEIPCDDEEDGVDYVSRLN
QIPQKKKFFALLNPRFEQVHVRGGGAGWRCKMIARLLNKSPQEVIETITI
GRNKSRAKKAAAKEMLSSLESRVPELFSSETNVKQNVQAIRSQSALNAIN
QLVREGHLLSQPNCETEEVSDRDEDRWRCCATLVTKDHGRKVFSEYGSSK
NVAKQKWARKALELLIELKSPGAEQFRCIIEPGQAPIKKTLASVPKASEV
IVRASDDEISNASCDDIVDDMDLSLELPSDYELVVAKTELDCEKWFEAHA
QPGTELGAFIDSKLARLSVDESITSEDGDESGKLKRPILCFSTATSCIVI
RIDKRQACENESNLDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVL
SEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKV
ISWEGIWPMKHTLVEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKR
INTAGVANDLEVLSRRIVEVGAG*

spliced messenger RNA

>Gcaud2039.t2 ID=Gcaud2039.t2|Name=Gcaud2039.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2322bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:3696..6017- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGACAAAAGGCAGTTCCTGGCAACACGGACGTTTACGGGCGCAA
CAGGGCTCATGAAACAGGACACTCCGCGCAGGATATCCGGATACCGTTTG
GAATCCCACCACCGGTTGTAGGGGGTCCACCGTTTCCTCAGGCGTTCGCA
TCATCGTCGGTCCGACAAGGAGGCCACCTCAATTTTGATCCCGCCAGCAT
GACCCAGTCGGGGATAACAGTACCCAACAGTGCAGATCATAGGGTACCCA
CTCCGCATTTTGGACTTGGAGGCTCGCATTTTGTCCAACATCCTGACAAT
CGAGTACACGGACTTTCTCCAGAGACGATTATTCAGTTAGGTAGAATTCC
TCCTCCTTCCTATGTGCCAATGCCGCCAATGACGGCGATGATGGGGTATC
GAGGCCAGCTCCCAATGCAACCGAATTTCCTTCCTGTACCTCAGATGCCA
ATGAACCCCTTTCTTCAAAGCCCTGGTGGAAATTTATACCACTCCCAAGC
TGCCCATTTCAACCCAGCTCTCAGTCGCGTTCAAGCTTCAGGTAATCCAT
TTCCCGTCAATCCGTCAGTAGCCAATAGCCCAGATCACGGTGGCACATCC
TATCCAGTACGACCGATACCGCTGTCGAATCTTGAGGTCAGAGCTTCTAA
TGGGGGTACCACAAGTAGACAACCAAAGGAAGGATCACACAAAGGCAAAC
CAAAGCCGCGGATATCCTCAGACTCAGACCCTGACGTCGTGACAAATGGT
TTGAACGACGACATAGGATCGGCAAGAAACAAGAAGCAGCCGGCTAAGAA
ACAGCAGACGAAGAAAACTCCAGACCCGTCCGTTATTGAAGTTGATGAGA
TCCCGTGCGACGACGAAGAAGATGGTGTAGACTATGTATCTCGTCTTAAT
CAAATCCCACAGAAAAAGAAGTTCTTTGCTCTACTAAATCCACGGTTTGA
GCAAGTGCATGTACGAGGTGGAGGGGCTGGATGGAGGTGTAAAATGATAG
CACGACTGCTGAACAAGTCACCTCAAGAGGTAATCGAAACTATCACAATC
GGTAGAAACAAGAGCCGCGCAAAGAAAGCTGCTGCTAAAGAGATGCTTTC
TAGTTTGGAATCAAGGGTGCCAGAATTGTTCTCCTCAGAAACCAATGTGA
AGCAAAACGTTCAGGCCATCAGATCCCAGAGTGCACTCAATGCCATAAAT
CAGCTTGTTCGTGAAGGACACTTACTTAGTCAGCCCAACTGCGAGACAGA
GGAGGTAAGTGATAGGGATGAAGATCGTTGGCGTTGTTGCGCAACGCTGG
TTACCAAAGATCACGGACGAAAAGTTTTTTCTGAGTATGGATCATCGAAA
AACGTTGCGAAACAAAAGTGGGCTCGAAAAGCACTTGAGCTTCTGATCGA
GTTAAAGTCACCGGGGGCGGAACAGTTCCGATGTATTATAGAACCGGGTC
AGGCACCGATAAAGAAGACGTTGGCAAGCGTACCCAAAGCATCTGAAGTC
ATAGTCCGAGCTAGTGATGATGAGATTTCCAATGCCTCTTGCGACGATAT
TGTTGATGACATGGACCTGAGTCTAGAGCTCCCAAGTGACTATGAACTCG
TTGTCGCCAAAACTGAACTGGACTGCGAGAAATGGTTTGAAGCCCACGCA
CAGCCTGGGACCGAGCTGGGCGCGTTCATCGATTCGAAGTTGGCACGGCT
GTCTGTTGATGAGAGCATCACTTCGGAAGATGGTGATGAATCTGGAAAGC
TGAAACGCCCAATACTATGCTTTTCGACGGCGACCTCATGTATTGTGATA
CGAATTGATAAGAGACAAGCGTGTGAGAATGAATCTAATCTGGACCTAGC
TCTGGACACATTTTGGATTCCGGAGGCTGTTGCAAGAGTACTTGAAGACC
CAAGGGTCCAGAAGACTGCTTTAGAGTGCGACGACGGGCTTGATGTACTC
TCTGAGGACCACGGAATCCAGTGCGAATCGGTTCAAGACATTGCAGTGTC
ATCTCTGGCCATTGCTGGGTATGGTAGAGTCAGCGATTCCCAAGACCTGT
CGTCCTTAAGAGATCTCACCAAATACTGGATGCGGAAAGAGGCAAAAGTA
ATTAGTTGGGAGGGCATATGGCCCATGAAGCATACTTTGGTAGAAGAAAG
GCTCGGCGAGGATACTGAAGAAGTAGCAATAGCGGTGTTGTCTGCCTACG
CCACATTTTGTGTCCGCGAGAAGGTTGGTGATGCTGCTCGATTGAAAAGA
ATTAACACGGCTGGCGTAGCCAATGATCTTGAGGTTCTGAGCAGGCGGAT
AGTAGAGGTCGGCGCTGGGTGA

protein sequence of Gcaud2039.t2

>Gcaud2039.t2 ID=Gcaud2039.t2|Name=Gcaud2039.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=774bp
MMGQKAVPGNTDVYGRNRAHETGHSAQDIRIPFGIPPPVVGGPPFPQAFA
SSSVRQGGHLNFDPASMTQSGITVPNSADHRVPTPHFGLGGSHFVQHPDN
RVHGLSPETIIQLGRIPPPSYVPMPPMTAMMGYRGQLPMQPNFLPVPQMP
MNPFLQSPGGNLYHSQAAHFNPALSRVQASGNPFPVNPSVANSPDHGGTS
YPVRPIPLSNLEVRASNGGTTSRQPKEGSHKGKPKPRISSDSDPDVVTNG
LNDDIGSARNKKQPAKKQQTKKTPDPSVIEVDEIPCDDEEDGVDYVSRLN
QIPQKKKFFALLNPRFEQVHVRGGGAGWRCKMIARLLNKSPQEVIETITI
GRNKSRAKKAAAKEMLSSLESRVPELFSSETNVKQNVQAIRSQSALNAIN
QLVREGHLLSQPNCETEEVSDRDEDRWRCCATLVTKDHGRKVFSEYGSSK
NVAKQKWARKALELLIELKSPGAEQFRCIIEPGQAPIKKTLASVPKASEV
IVRASDDEISNASCDDIVDDMDLSLELPSDYELVVAKTELDCEKWFEAHA
QPGTELGAFIDSKLARLSVDESITSEDGDESGKLKRPILCFSTATSCIVI
RIDKRQACENESNLDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVL
SEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKV
ISWEGIWPMKHTLVEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKR
INTAGVANDLEVLSRRIVEVGAG*

mRNA from alignment at NODE_1239_length_12250_cov_4.291307:3696..6017-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2039.t2 ID=Gcaud2039.t2|Name=Gcaud2039.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2322bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:3696..6017- (Gracilaria caudata M_176_S67 male)
ATGATGGGACAAAAGGCAGTTCCTGGCAACACGGACGTTTACGGGCGCAA
CAGGGCTCATGAAACAGGACACTCCGCGCAGGATATCCGGATACCGTTTG
GAATCCCACCACCGGTTGTAGGGGGTCCACCGTTTCCTCAGGCGTTCGCA
TCATCGTCGGTCCGACAAGGAGGCCACCTCAATTTTGATCCCGCCAGCAT
GACCCAGTCGGGGATAACAGTACCCAACAGTGCAGATCATAGGGTACCCA
CTCCGCATTTTGGACTTGGAGGCTCGCATTTTGTCCAACATCCTGACAAT
CGAGTACACGGACTTTCTCCAGAGACGATTATTCAGTTAGGTAGAATTCC
TCCTCCTTCCTATGTGCCAATGCCGCCAATGACGGCGATGATGGGGTATC
GAGGCCAGCTCCCAATGCAACCGAATTTCCTTCCTGTACCTCAGATGCCA
ATGAACCCCTTTCTTCAAAGCCCTGGTGGAAATTTATACCACTCCCAAGC
TGCCCATTTCAACCCAGCTCTCAGTCGCGTTCAAGCTTCAGGTAATCCAT
TTCCCGTCAATCCGTCAGTAGCCAATAGCCCAGATCACGGTGGCACATCC
TATCCAGTACGACCGATACCGCTGTCGAATCTTGAGGTCAGAGCTTCTAA
TGGGGGTACCACAAGTAGACAACCAAAGGAAGGATCACACAAAGGCAAAC
CAAAGCCGCGGATATCCTCAGACTCAGACCCTGACGTCGTGACAAATGGT
TTGAACGACGACATAGGATCGGCAAGAAACAAGAAGCAGCCGGCTAAGAA
ACAGCAGACGAAGAAAACTCCAGACCCGTCCGTTATTGAAGTTGATGAGA
TCCCGTGCGACGACGAAGAAGATGGTGTAGACTATGTATCTCGTCTTAAT
CAAATCCCACAGAAAAAGAAGTTCTTTGCTCTACTAAATCCACGGTTTGA
GCAAGTGCATGTACGAGGTGGAGGGGCTGGATGGAGGTGTAAAATGATAG
CACGACTGCTGAACAAGTCACCTCAAGAGGTAATCGAAACTATCACAATC
GGTAGAAACAAGAGCCGCGCAAAGAAAGCTGCTGCTAAAGAGATGCTTTC
TAGTTTGGAATCAAGGGTGCCAGAATTGTTCTCCTCAGAAACCAATGTGA
AGCAAAACGTTCAGGCCATCAGATCCCAGAGTGCACTCAATGCCATAAAT
CAGCTTGTTCGTGAAGGACACTTACTTAGTCAGCCCAACTGCGAGACAGA
GGAGGTAAGTGATAGGGATGAAGATCGTTGGCGTTGTTGCGCAACGCTGG
TTACCAAAGATCACGGACGAAAAGTTTTTTCTGAGTATGGATCATCGAAA
AACGTTGCGAAACAAAAGTGGGCTCGAAAAGCACTTGAGCTTCTGATCGA
GTTAAAGTCACCGGGGGCGGAACAGTTCCGATGTATTATAGAACCGGGTC
AGGCACCGATAAAGAAGACGTTGGCAAGCGTACCCAAAGCATCTGAAGTC
ATAGTCCGAGCTAGTGATGATGAGATTTCCAATGCCTCTTGCGACGATAT
TGTTGATGACATGGACCTGAGTCTAGAGCTCCCAAGTGACTATGAACTCG
TTGTCGCCAAAACTGAACTGGACTGCGAGAAATGGTTTGAAGCCCACGCA
CAGCCTGGGACCGAGCTGGGCGCGTTCATCGATTCGAAGTTGGCACGGCT
GTCTGTTGATGAGAGCATCACTTCGGAAGATGGTGATGAATCTGGAAAGC
TGAAACGCCCAATACTATGCTTTTCGACGGCGACCTCATGTATTGTGATA
CGAATTGATAAGAGACAAGCGTGTGAGAATGAATCTAATCTGGACCTAGC
TCTGGACACATTTTGGATTCCGGAGGCTGTTGCAAGAGTACTTGAAGACC
CAAGGGTCCAGAAGACTGCTTTAGAGTGCGACGACGGGCTTGATGTACTC
TCTGAGGACCACGGAATCCAGTGCGAATCGGTTCAAGACATTGCAGTGTC
ATCTCTGGCCATTGCTGGGTATGGTAGAGTCAGCGATTCCCAAGACCTGT
CGTCCTTAAGAGATCTCACCAAATACTGGATGCGGAAAGAGGCAAAAGTA
ATTAGTTGGGAGGGCATATGGCCCATGAAGCATACTTTGGTAGAAGAAAG
GCTCGGCGAGGATACTGAAGAAGTAGCAATAGCGGTGTTGTCTGCCTACG
CCACATTTTGTGTCCGCGAGAAGGTTGGTGATGCTGCTCGATTGAAAAGA
ATTAACACGGCTGGCGTAGCCAATGATCTTGAGGTTCTGAGCAGGCGGAT
AGTAGAGGTCGGCGCTGGGTGA

Coding sequence (CDS) from alignment at NODE_1239_length_12250_cov_4.291307:3696..6017-

>Gcaud2039.t2 ID=Gcaud2039.t2|Name=Gcaud2039.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2322bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:3696..6017- (Gracilaria caudata M_176_S67 male)
ATGATGGGACAAAAGGCAGTTCCTGGCAACACGGACGTTTACGGGCGCAA
CAGGGCTCATGAAACAGGACACTCCGCGCAGGATATCCGGATACCGTTTG
GAATCCCACCACCGGTTGTAGGGGGTCCACCGTTTCCTCAGGCGTTCGCA
TCATCGTCGGTCCGACAAGGAGGCCACCTCAATTTTGATCCCGCCAGCAT
GACCCAGTCGGGGATAACAGTACCCAACAGTGCAGATCATAGGGTACCCA
CTCCGCATTTTGGACTTGGAGGCTCGCATTTTGTCCAACATCCTGACAAT
CGAGTACACGGACTTTCTCCAGAGACGATTATTCAGTTAGGTAGAATTCC
TCCTCCTTCCTATGTGCCAATGCCGCCAATGACGGCGATGATGGGGTATC
GAGGCCAGCTCCCAATGCAACCGAATTTCCTTCCTGTACCTCAGATGCCA
ATGAACCCCTTTCTTCAAAGCCCTGGTGGAAATTTATACCACTCCCAAGC
TGCCCATTTCAACCCAGCTCTCAGTCGCGTTCAAGCTTCAGGTAATCCAT
TTCCCGTCAATCCGTCAGTAGCCAATAGCCCAGATCACGGTGGCACATCC
TATCCAGTACGACCGATACCGCTGTCGAATCTTGAGGTCAGAGCTTCTAA
TGGGGGTACCACAAGTAGACAACCAAAGGAAGGATCACACAAAGGCAAAC
CAAAGCCGCGGATATCCTCAGACTCAGACCCTGACGTCGTGACAAATGGT
TTGAACGACGACATAGGATCGGCAAGAAACAAGAAGCAGCCGGCTAAGAA
ACAGCAGACGAAGAAAACTCCAGACCCGTCCGTTATTGAAGTTGATGAGA
TCCCGTGCGACGACGAAGAAGATGGTGTAGACTATGTATCTCGTCTTAAT
CAAATCCCACAGAAAAAGAAGTTCTTTGCTCTACTAAATCCACGGTTTGA
GCAAGTGCATGTACGAGGTGGAGGGGCTGGATGGAGGTGTAAAATGATAG
CACGACTGCTGAACAAGTCACCTCAAGAGGTAATCGAAACTATCACAATC
GGTAGAAACAAGAGCCGCGCAAAGAAAGCTGCTGCTAAAGAGATGCTTTC
TAGTTTGGAATCAAGGGTGCCAGAATTGTTCTCCTCAGAAACCAATGTGA
AGCAAAACGTTCAGGCCATCAGATCCCAGAGTGCACTCAATGCCATAAAT
CAGCTTGTTCGTGAAGGACACTTACTTAGTCAGCCCAACTGCGAGACAGA
GGAGGTAAGTGATAGGGATGAAGATCGTTGGCGTTGTTGCGCAACGCTGG
TTACCAAAGATCACGGACGAAAAGTTTTTTCTGAGTATGGATCATCGAAA
AACGTTGCGAAACAAAAGTGGGCTCGAAAAGCACTTGAGCTTCTGATCGA
GTTAAAGTCACCGGGGGCGGAACAGTTCCGATGTATTATAGAACCGGGTC
AGGCACCGATAAAGAAGACGTTGGCAAGCGTACCCAAAGCATCTGAAGTC
ATAGTCCGAGCTAGTGATGATGAGATTTCCAATGCCTCTTGCGACGATAT
TGTTGATGACATGGACCTGAGTCTAGAGCTCCCAAGTGACTATGAACTCG
TTGTCGCCAAAACTGAACTGGACTGCGAGAAATGGTTTGAAGCCCACGCA
CAGCCTGGGACCGAGCTGGGCGCGTTCATCGATTCGAAGTTGGCACGGCT
GTCTGTTGATGAGAGCATCACTTCGGAAGATGGTGATGAATCTGGAAAGC
TGAAACGCCCAATACTATGCTTTTCGACGGCGACCTCATGTATTGTGATA
CGAATTGATAAGAGACAAGCGTGTGAGAATGAATCTAATCTGGACCTAGC
TCTGGACACATTTTGGATTCCGGAGGCTGTTGCAAGAGTACTTGAAGACC
CAAGGGTCCAGAAGACTGCTTTAGAGTGCGACGACGGGCTTGATGTACTC
TCTGAGGACCACGGAATCCAGTGCGAATCGGTTCAAGACATTGCAGTGTC
ATCTCTGGCCATTGCTGGGTATGGTAGAGTCAGCGATTCCCAAGACCTGT
CGTCCTTAAGAGATCTCACCAAATACTGGATGCGGAAAGAGGCAAAAGTA
ATTAGTTGGGAGGGCATATGGCCCATGAAGCATACTTTGGTAGAAGAAAG
GCTCGGCGAGGATACTGAAGAAGTAGCAATAGCGGTGTTGTCTGCCTACG
CCACATTTTGTGTCCGCGAGAAGGTTGGTGATGCTGCTCGATTGAAAAGA
ATTAACACGGCTGGCGTAGCCAATGATCTTGAGGTTCTGAGCAGGCGGAT
AGTAGAGGTCGGCGCTGGGTGA